Enhancing short-read sequencing simulation: Updates to NEAT

Enhancing short-read sequencing simulation: Updates to NEAT - Published in JOSS (2026)
https://github.com/ncsa/neat

Keywords

bioinformatics bioinformatics-tool

Last synced: about 1 month ago
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Acceptance Criteria

• Revelant topics? true
• External users? true
• Open source license? true
• Active? true
• Fork? false

Repository metadata

NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.

• Host: GitHub
• URL: https://github.com/ncsa/neat
• Owner: ncsa
• License: other
• Created: 2021-03-19T21:40:14.000Z (about 5 years ago)
• Default Branch: main
• Last Pushed: 2026-05-04T08:18:30.000Z (about 1 month ago)
• Last Synced: 2026-05-04T10:23:22.480Z (about 1 month ago)
• Topics: bioinformatics, bioinformatics-tool
• Language: Python
• Homepage:
• Size: 147 MB
• Stars: 71
• Watchers: 2
• Forks: 24
• Open Issues: 7
• Releases: 0
• Metadata Files:
  • Readme: README.md
  • Changelog: ChangeLog.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE.md
  • Code of conduct: CODE_OF_CONDUCT.md

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GitHub Events

Total

• Release event: 4
• Delete event: 44
• Pull request event: 50
• Fork event: 5
• Issues event: 52
• Watch event: 13
• Issue comment event: 88
• Push event: 182
• Pull request review comment event: 11
• Pull request review event: 15
• Create event: 43

Last Year

• Release event: 1
• Delete event: 37
• Pull request event: 30
• Fork event: 4
• Issues event: 33
• Watch event: 8
• Issue comment event: 42
• Push event: 118
• Pull request review event: 13
• Pull request review comment event: 11
• Create event: 32

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Committers metadata

Last synced: about 1 month ago

Name	Email	Commits
Joshua Allen	j****7@i****u	1529
YashWasnik7	4****7	255
Zachary Stephens	z****h@Z****l	107
Keshav	k****3@i****u	74
meridith-e	6****e	57
Matthew Weber	m****2@i****u	56
Zachary Stephens	z****h@z****l	42
Joshua Allen	a****a@m****u	30
Zachary Stephens	z****h@w****u	28
karen	k****2@i****u	24
Joshua Allen	j****l@p****n	22
Liudmila Sergeevna Mainzer	l****r@i****u	17
Johannes Köster	j****r@t****e	15
Zachary Stephens	z****h@Z****l	15
Jenna Kalleberg - Lewis	j****2@m****u	12
Zachary Stephens	z****h@w****u	9
Thon Deboer	t****r@m****m	6
Zachary Stephens	z****h@z****u	6
kirill	1****3@e****m	3
Aleksey Ermolaev	e****2@y****u	3
Zachary Stephens	z****h@i****a	3
Zachary Stephens	z****h@w****u	3
Zachary Stephens	z****h@w****u	2
Zachary Stephens	z****h@w****u	2
Morgan Taschuk	m****k@o****a	2
Yen-Chung Chen	c****g@g****m	2
Zhouyang Lian	z****n@f****e	2
zstephens	z****s	1
Liudmila Mainzer	l****r@c****u	1
Zachary Stephens	z****h@z****u	1
and 2 more...

Committer domains:

• illinois.edu: 5
• mayo.edu: 1
• wirelessprv-10-193-173-104.near.illinois.edu: 1
• pop-os.localdomain: 1
• tu-dortmund.de: 1
• mail.missouri.edu: 1
• wirelessprv-10-192-29-111.near.illinois.edu: 1
• me.com: 1
• zacharys-mbp.mayo.edu: 1
• yandex.ru: 1
• inside-249-109.wireless.utoronto.ca: 1
• wirelessprv-10-195-117-42.near.illinois.edu: 1
• wirelessprvnat-172-17-213-248.near.illinois.edu: 1
• wirelessprvnat-172-17-27-135.near.illinois.edu: 1
• oicr.on.ca: 1
• familian.life: 1
• compgen.igb.illinois.edu: 1
• zacharys-air.mayo.edu: 1

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Issue and Pull Request metadata

Last synced: about 1 month ago

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/ncsa/neat

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Dependencies

Score: 7.822444729489318