TaxonoPy

A Python package for efficiently aligning organismal taxonomic hierarchies using the Global Names Verifier.
https://github.com/imageomics/taxonopy

Category: Biosphere
Sub Category: Biodiversity Analysis and Metrics

Keywords

alignment hierarchy taxonomic-resolution taxonomy tree-of-life

Last synced: about 8 hours ago
JSON representation

Repository metadata

A Python package for efficiently aligning organismal taxonomic hierarchies using the Global Names Verifier

• Host: GitHub
• URL: https://github.com/imageomics/taxonopy
• Owner: Imageomics
• License: mit
• Created: 2024-04-19T15:37:30.000Z (about 2 years ago)
• Default Branch: main
• Last Pushed: 2026-05-22T14:47:26.000Z (about 1 month ago)
• Last Synced: 2026-06-09T16:03:49.059Z (14 days ago)
• Topics: alignment, hierarchy, taxonomic-resolution, taxonomy, tree-of-life
• Language: Python
• Homepage: https://imageomics.github.io/TaxonoPy/
• Size: 1.33 MB
• Stars: 19
• Watchers: 5
• Forks: 0
• Open Issues: 14
• Releases: 3
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Citation: CITATION.cff
  • Zenodo: .zenodo.json
  • Agents: AGENTS.md

README.md

Citation (CITATION.cff)

abstract: "A Python package for efficiently aligning organismal taxonomic hierarchies using the Global Names Verifier."
authors:
- family-names: "Thompson"
  given-names: "Matthew J."
  orcid: "https://orcid.org/0000-0003-0583-8585"
- family-names: "Campolongo"
  given-names: "Elizabeth G."
  orcid: "https://orcid.org/0000-0003-0846-2413"
- family-names: "Lapp"
  given-names: "Hilmar"
  orcid: "https://orcid.org/0000-0001-9107-0714"
- family-names: "Gu"
  given-names: "Jianyang"
  orcid: "https://orcid.org/0000-0002-4060-7427"
cff-version: 1.2.0
date-released: "2026-02-13"
identifiers:
  - description: "The GitHub release URL of tag v0.2.0."
    type: url
    value: "https://github.com/Imageomics/TaxonoPy/releases/tag/v0.2.0"
  - description: "The GitHub URL of the commit tagged with v0.2.0"
    type: url
    value: "https://github.com/Imageomics/TaxonoPy/tree/<update-after-release>"
keywords:
  - imageomics
  - taxonomy
  - "taxonomic resolution"
  - "tree of life"
  - alignment
  - hierarchy
references:
  - type: software
    title: "GNverifier -- a reconciler and resolver of scientific names against more than 100 data sources."
    version: "v1.2.5"
    authors:
      - family-names: "Mozzherin"
        given-names: "Dmitry"
        orcid: "https://orcid.org/0000-0003-1593-1417"
    repository-code: "https://github.com/gnames/gnverifier"
    date-released: "2025-04-02"
    doi: 10.5281/zenodo.5111542
    license: MIT
license: MIT
message: "If you use this software, please cite it using the metadata from this file."
repository-code: "https://github.com/Imageomics/TaxonoPy"
title: "TaxonoPy"
version: "0.2.0"
doi: "10.5281/zenodo.15499454"
type: software

---

Owner metadata

• Name: Imageomics Institute
• Login: Imageomics
• Email:
• Kind: organization
• Description:
• Website: https://imageomics.osu.edu
• Location:
• Twitter: imageomics
• Company:
• Icon url: https://avatars.githubusercontent.com/u/77468321?v=4
• Repositories: 4
• Last ynced at: 2023-03-05T05:05:36.574Z
• Profile URL: https://github.com/Imageomics

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GitHub Events

Total

• Release event: 1
• Delete event: 7
• Member event: 2
• Pull request event: 7
• Issues event: 7
• Watch event: 8
• Issue comment event: 11
• Public event: 1
• Push event: 55
• Gollum event: 1
• Pull request review event: 12
• Pull request review comment event: 21
• Create event: 5

Last Year

• Release event: 1
• Delete event: 5
• Member event: 2
• Pull request event: 5
• Issues event: 6
• Watch event: 8
• Issue comment event: 11
• Push event: 53
• Pull request review comment event: 20
• Pull request review event: 11
• Gollum event: 1
• Create event: 3

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Committers metadata

Last synced: 4 days ago

Name	Email	Commits
Matthew Thompson	t****9@o****u	27
Elizabeth Campolongo	3****9	1
Dahlializi	1****i	1

Committer domains:

• osu.edu: 1

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Issue and Pull Request metadata

Last synced: 30 days ago

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/imageomics/taxonopy

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Package metadata

• Total packages: 1
• Total downloads:
  • pypi: 75 last-month
• Total dependent packages: 0
• Total dependent repositories: 0
• Total versions: 3

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Dependencies

Score: 8.9126079636709