Symbiota

A library of webtools to aid biologists in establishing specimen based virtual floras and faunas.
https://github.com/symbiota/symbiota

Category: Biosphere
Sub Category: Biodiversity Data Access and Management

Keywords

biodiversity content-management-system natural-history-collections

Keywords from Contributors

biodiversity-informatics bioinformatics-databases natural-history biodiversity-data taxonomy

Last synced: about 20 hours ago
JSON representation

Repository metadata

The Symbiota Virtual Flora/Fauna project develops on-line tools to aid the generation, exploration and management of biodiversity data (collection specimens, observations, images, checklists, keys, etc.). See also: http://bdj.pensoft.net/articles.php?id=1114 and https://symbiota.org/. For documentation, please visit https://symbiota.org/docs

Host: GitHub
URL: https://github.com/symbiota/symbiota
Owner: Symbiota
License: gpl-2.0
Fork: true (egbot/Symbiota)
Created: 2017-05-23T17:16:22.000Z (almost 9 years ago)
Default Branch: master
Last Pushed: 2026-03-13T03:25:23.000Z (10 days ago)
Last Synced: 2026-03-13T09:00:18.429Z (10 days ago)
Topics: biodiversity, content-management-system, natural-history-collections
Language: JavaScript
Homepage:
Size: 159 MB
Stars: 53
Watchers: 3
Forks: 61
Open Issues: 136
Releases: 31
Metadata Files:
- Readme: README.md
- Contributing: docs/CONTRIBUTING.md
- License: LICENSE.md

Owner metadata

Name: Symbiota Biodiversity Management Software
Login: Symbiota
Email: symbiota@asu.edu
Kind: organization
Description: Software project working toward building a library of webtools to aid biologists in establishing specimen-based virtual floras and faunas
Website: https://symbiota.org
Location: Tempe, Arizona
Twitter:
Company:
Icon url: https://avatars.githubusercontent.com/u/16150820?v=4
Repositories: 3
Last ynced at: 2025-03-19T23:29:05.835Z
Profile URL: https://github.com/Symbiota

GitHub Events

Total

Release event: 11
Delete event: 447
Member event: 2
Pull request event: 664
Fork event: 4
Issues event: 517
Watch event: 8
Issue comment event: 504
Push event: 1210
Pull request review comment event: 193
Pull request review event: 564
Create event: 435

Last Year

Release event: 11
Delete event: 447
Member event: 2
Pull request event: 664
Fork event: 4
Issues event: 517
Watch event: 8
Issue comment event: 504
Push event: 1210
Pull request review comment event: 193
Pull request review event: 564
Create event: 435

Committers metadata

Last synced: 3 days ago

Total Commits: 7,164
Total Committers: 37
Avg Commits per committer: 193.622
Development Distribution Score (DDS): 0.627

Commits in past year: 436
Committers in past year: 12
Avg Commits per committer in past year: 36.333
Development Distribution Score (DDS) in past year: 0.75

Name	Email	Commits
Edward Gilbert	e**t@a**u	2674
egbot	e**t@6**5	1538
Katie Pearson	k**4@g**m	568
bdbrandt	b**t@6**5	483
Logan Wilt	9****k	263
Mark	m**r@g**m	222
NikitaSalikov	8****v	221
bdbrandt	b**t@n**u	210
Laura Rocha Prado	l**o@a**u	177
chicoreus	c**s@6**5	150
Greg Post	g**t@a**u	140
rjanglin	r**n@6**5	108
Andrew Johnston	a**n@a**u	73
Samanta Orellana	k**e@g**m	59
daryllafferty	d**y@6**5	51
James Mickley	j**y@o**u	37
Christopher Tyrrell	4****l	32
dereklafferty	d**y@6**5	29
Ramisa Zaman	1****n	28
dlowery	d**y@6**5	26
s855f372	s**2@k**u	15
Katie Pearson	k**o@c**u	11
Vaughn Shirey	v**4@d**u	9
dependabot[bot]	4****]	6
Matthew Meshulam	m**3@u**u	5
Greg Post	9****U	4
Tom Prather	t**r@u**u	4
dflemin	d**2@a**u	4
lowery	l**b@g**m	4
Matt Meshulam	m****m	3
and 7 more...

Committer domains:

Issue and Pull Request metadata

Last synced: 2 days ago

Total issues: 205
Total pull requests: 344
Average time to close issues: about 2 months
Average time to close pull requests: 4 days
Total issue authors: 10
Total pull request authors: 14
Average comments per issue: 0.49
Average comments per pull request: 0.4
Merged pull request: 200
Bot issues: 0
Bot pull requests: 1

Past year issues: 186
Past year pull requests: 340
Past year average time to close issues: 14 days
Past year average time to close pull requests: 3 days
Past year issue authors: 10
Past year pull request authors: 14
Past year average comments per issue: 0.41
Past year average comments per pull request: 0.35
Past year merged pull request: 197
Past year bot issues: 0
Past year bot pull requests: 1

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/symbiota/symbiota

Top Issue Authors

themerekat (141)
Atticus29 (22)
ljwalker (11)
egbot (7)
ksorellana (7)
mickley (6)
MuchQuak (4)
meshulam (4)
GregoryPost (2)
zygoballus (1)

Top Pull Request Authors

MuchQuak (92)
egbot (63)
Atticus29 (54)
GregoryPost (44)
NikitaSalikov (42)
themerekat (28)
s855f372 (7)
meshulam (5)
mickley (4)
ksorellana (1)
ljwalker (1)
umn-meshulam (1)
esamelson (1)
dependabot[bot] (1)

Top Issue Labels

bug (67)
enhancement (33)
aesthetics (15)
up for grabs (8)
Expected feature (4)
CCH2 (4)
Ecdysis (3)
easy win (3)
lang tags (2)
Bryophyte Portal (2)
documentation (2)
popular (2)
Lichen portal (2)
typo (1)
high priority (1)
SEINet (1)
accessibility (1)

Top Pull Request Labels

dependencies (1)
javascript (1)

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symfony/polyfill-php73 ^1.9
symfony/polyfill-php80 ^1.16

api/vendor/symfony/mime/composer.json packagist

egulias/email-validator ^2.1.10|^3.1 development
phpdocumentor/reflection-docblock ^3.0|^4.0|^5.0 development
symfony/dependency-injection ^4.4|^5.0|^6.0 development
symfony/property-access ^4.4|^5.1|^6.0 development
symfony/property-info ^4.4|^5.1|^6.0 development
symfony/serializer ^5.2|^6.0 development
php >=7.2.5
symfony/deprecation-contracts ^2.1|^3
symfony/polyfill-intl-idn ^1.10
symfony/polyfill-mbstring ^1.0
symfony/polyfill-php80 ^1.16

api/vendor/symfony/polyfill-ctype/composer.json packagist

php >=7.1

api/vendor/symfony/polyfill-intl-grapheme/composer.json packagist

php >=7.1

api/vendor/symfony/polyfill-intl-idn/composer.json packagist

php >=7.1
symfony/polyfill-intl-normalizer ^1.10
symfony/polyfill-php72 ^1.10

api/vendor/symfony/polyfill-intl-normalizer/composer.json packagist

php >=7.1

api/vendor/symfony/polyfill-mbstring/composer.json packagist

php >=7.1

api/vendor/symfony/polyfill-php72/composer.json packagist

php >=7.1

api/vendor/symfony/polyfill-php73/composer.json packagist

php >=7.1

api/vendor/symfony/polyfill-php80/composer.json packagist

php >=7.1

api/vendor/symfony/polyfill-php81/composer.json packagist

php >=7.1

api/vendor/symfony/process/composer.json packagist

php >=7.2.5
symfony/polyfill-php80 ^1.16

api/vendor/symfony/service-contracts/composer.json packagist

php >=7.2.5
psr/container ^1.1
symfony/deprecation-contracts ^2.1

api/vendor/symfony/string/composer.json packagist

symfony/error-handler ^5.4|^6.0 development
symfony/http-client ^5.4|^6.0 development
symfony/translation-contracts ^2.0|^3.0 development
symfony/var-exporter ^5.4|^6.0 development
php >=8.0.2
symfony/polyfill-ctype ~1.8
symfony/polyfill-intl-grapheme ~1.0
symfony/polyfill-intl-normalizer ~1.0
symfony/polyfill-mbstring ~1.0

api/vendor/symfony/translation/composer.json packagist

psr/log ^1|^2|^3 development
symfony/config ^4.4|^5.0|^6.0 development
symfony/console ^5.4|^6.0 development
symfony/dependency-injection ^5.0|^6.0 development
symfony/finder ^4.4|^5.0|^6.0 development
symfony/http-client-contracts ^1.1|^2.0|^3.0 development
symfony/http-kernel ^5.0|^6.0 development
symfony/intl ^4.4|^5.0|^6.0 development
symfony/polyfill-intl-icu ^1.21 development
symfony/service-contracts ^1.1.2|^2|^3 development
symfony/yaml ^4.4|^5.0|^6.0 development
php >=7.2.5
symfony/deprecation-contracts ^2.1|^3
symfony/polyfill-mbstring ~1.0
symfony/polyfill-php80 ^1.16
symfony/translation-contracts ^2.3

api/vendor/symfony/translation-contracts/composer.json packagist

php >=7.2.5

api/vendor/symfony/var-dumper/composer.json packagist

ext-iconv * development
symfony/console ^4.4|^5.0|^6.0 development
symfony/process ^4.4|^5.0|^6.0 development
symfony/uid ^5.1|^6.0 development
twig/twig ^2.13|^3.0.4 development
php >=7.2.5
symfony/polyfill-mbstring ~1.0
symfony/polyfill-php80 ^1.16

api/vendor/symfony/yaml/composer.json packagist

symfony/console ^5.4|^6.0 development
php >=8.0.2
symfony/polyfill-ctype ^1.8

api/vendor/theseer/tokenizer/composer.json packagist

ext-dom *
ext-tokenizer *
ext-xmlwriter *
php ^7.2 || ^8.0

api/vendor/vlucas/phpdotenv/composer.json packagist

bamarni/composer-bin-plugin ^1.4.1 development
ext-filter * development
phpunit/phpunit ^7.5.20 || ^8.5.21 || ^9.5.10 development
ext-pcre *
graham-campbell/result-type ^1.0.2
php ^7.1.3 || ^8.0
phpoption/phpoption ^1.8
symfony/polyfill-ctype ^1.23
symfony/polyfill-mbstring ^1.23.1
symfony/polyfill-php80 ^1.23.1

api/vendor/voku/portable-ascii/build/composer.json packagist

voku/php-readme-helper ~0.6 development

api/vendor/voku/portable-ascii/composer.json packagist

phpunit/phpunit ~6.0 || ~7.0 || ~9.0 development
php >=7.0.0

api/vendor/webmozart/assert/composer.json packagist

phpunit/phpunit ^8.5.13 development
php ^7.2 || ^8.0
symfony/polyfill-ctype ^1.8

api/vendor/zircote/swagger-php/composer.json packagist

composer/package-versions-deprecated 1.11.99.2 development
friendsofphp/php-cs-fixer ^2.17 || ^3.0 development
phpunit/phpunit >=8.5.14 development
doctrine/annotations ^1.7
ext-json *
php >=7.2
psr/log ^1.1 || ^2.0 || ^3.0
symfony/finder >=2.2
symfony/yaml >=3.3

composer.json packagist

phpoffice/phpspreadsheet ^1.18
phpoffice/phpword ^0.18.2

composer.lock packagist

ezyang/htmlpurifier v4.13.0
laminas/laminas-escaper 2.8.0
laminas/laminas-zendframework-bridge 1.3.0
maennchen/zipstream-php 2.1.0
markbaker/complex 2.0.3
markbaker/matrix 2.1.3
myclabs/php-enum 1.8.3
phpoffice/phpspreadsheet 1.18.0
phpoffice/phpword 0.18.2
psr/http-client 1.0.1
psr/http-factory 1.0.1
psr/http-message 1.0.1
psr/simple-cache 1.0.1
symfony/polyfill-mbstring v1.23.0

api/vendor/swagger-api/swagger-ui/package-lock.json npm

2004 dependencies

api/vendor/swagger-api/swagger-ui/package.json npm

@babel/cli =7.14.5 development
@babel/core =7.14.6 development
@babel/eslint-parser =7.14.3 development
@babel/plugin-proposal-class-properties =7.14.5 development
@babel/plugin-proposal-nullish-coalescing-operator =7.14.5 development
@babel/plugin-proposal-optional-chaining =7.14.5 development
@babel/plugin-transform-runtime =7.14.5 development
@babel/preset-env =7.14.7 development
@babel/preset-react =7.14.5 development
@babel/register =7.14.5 development
@commitlint/cli ^12.1.4 development
@commitlint/config-conventional ^12.1.4 development
@jest/globals =27.0.6 development
@release-it/conventional-changelog =3.0.1 development
autoprefixer ^10.2.6 development
babel-loader ^8.1.0 development
babel-plugin-lodash =3.3.4 development
babel-plugin-module-resolver =4.1.0 development
babel-plugin-transform-react-remove-prop-types =0.4.24 development
body-parser ^1.19.0 development
chromedriver ^93.0.1 development
cors ^2.8.5 development
cross-env =7.0.3 development
css-loader =5.2.6 development
cssnano =5.0.4 development
cypress ^8.1.0 development
dedent ^0.7.0 development
deepmerge ^4.0.0 development
enzyme ^2.7.1 development
eslint ^7.29.0 development
eslint-plugin-import ^2.23.4 development
eslint-plugin-jest ^24.3.6 development
eslint-plugin-mocha ^9.0.0 development
eslint-plugin-react ^7.24.0 development
esm =3.2.25 development
expect ^1.20.2 development
express ^4.17.1 development
file-loader ^6.0.0 development
git-describe ^4.0.4 development
husky =6.0.0 development
ignore-assets-webpack-plugin ^2.0.1 development
inspectpack =4.7.1 development
jest =27.0.6 development
jsdom =16.6.0 development
json-loader ^0.5.7 development
json-merger ^1.1.6 development
json-server =0.16.3 development
less ^4.1.1 development
license-checker ^25.0.0 development
lint-staged =11.0.0 development
local-web-server ^4.2.1 development
mini-css-extract-plugin ^1.6.2 development
mocha =8.4.0 development
nightwatch ^1.7.7 development
npm-audit-ci-wrapper ^3.0.2 development
npm-run-all ^4.1.5 development
oauth2-server ^2.4.1 development
open ^8.2.0 development
postcss =8.3.5 development
postcss-loader =4.3.0 development
postcss-preset-env =6.7.0 development
prettier ^2.3.0 development
raw-loader ^4.0.0 development
react-test-renderer ^15.7.0 development
release-it =14.10.0 development
rimraf ^3.0.0 development
sass ^1.35.1 development
sass-loader ^9.0.3 development
selenium-server-standalone-jar ^3.141.5 development
source-map-support ^0.5.19 development
tachyons-sass ^4.9.5 development
terser-webpack-plugin ^4.2.3 development
url-loader ^4.1.1 development
webpack ^4.46.0 development
webpack-bundle-size-analyzer ^3.1.0 development
webpack-cli ^4.7.2 development
webpack-dev-server ^3.11.2 development
webpack-stats-plugin =1.0.3 development
@babel/runtime-corejs3 ^7.14.7
@braintree/sanitize-url ^5.0.2
@kyleshockey/object-assign-deep ^0.4.2
@kyleshockey/xml ^1.0.2
base64-js ^1.5.1
classnames ^2.3.1
css.escape 1.5.1
deep-extend 0.6.0
dompurify ^2.2.9
ieee754 ^1.2.1
immutable ^3.x.x
js-file-download ^0.4.12
js-yaml =4.1.0
lodash ^4.17.21
memoizee ^0.4.15
prop-types ^15.7.2
randombytes ^2.1.0
react =15.7.0
react-copy-to-clipboard 5.0.3
react-debounce-input ^3.2.3
react-dom =15.7.0
react-immutable-proptypes 2.2.0
react-immutable-pure-component ^1.1.1
react-inspector ^2.3.0
react-motion ^0.5.2
react-redux =4.4.10
react-syntax-highlighter ^15.4.4
redux =3.7.2
redux-immutable 3.1.0
remarkable ^2.0.1
reselect ^4.0.0
serialize-error ^8.1.0
sha.js ^2.4.11
swagger-client ^3.17.0
url-parse ^1.5.2
xml-but-prettier ^1.0.1
zenscroll ^4.0.2

api/vendor/zircote/swagger-php/docs/package.json npm

vuepress ^1.5.4 development

api/vendor/zircote/swagger-php/docs/yarn.lock npm

1057 dependencies

js/jquery-ui/package.json npm

commitplease 3.2.0 development
eslint-config-jquery 3.0.0 development
glob 7.2.0 development
grunt 1.4.1 development
grunt-bowercopy 1.2.5 development
grunt-cli 1.4.3 development
grunt-compare-size 0.4.2 development
grunt-contrib-concat 1.0.1 development
grunt-contrib-csslint 2.0.0 development
grunt-contrib-qunit 5.1.1 development
grunt-contrib-requirejs 1.0.0 development
grunt-contrib-uglify 5.0.1 development
grunt-eslint 23.0.0 development
grunt-git-authors 3.2.0 development
grunt-html 14.5.0 development
load-grunt-tasks 5.1.0 development
rimraf 3.0.2 development
testswarm 1.1.2 development
jquery >=1.8.0 <4.0.0

js/jquery-ui-1.12.1/package.json npm

commitplease 2.3.0 development
grunt 1.3.0 development
grunt-bowercopy 1.2.4 development
grunt-cli 0.1.13 development
grunt-compare-size 0.4.0 development
grunt-contrib-concat 0.5.1 development
grunt-contrib-csslint 0.5.0 development
grunt-contrib-jshint 0.12.0 development
grunt-contrib-qunit 1.0.1 development
grunt-contrib-requirejs 0.4.4 development
grunt-contrib-uglify 0.11.1 development
grunt-git-authors 3.1.0 development
grunt-html 6.0.0 development
grunt-jscs 2.1.0 development
load-grunt-tasks 3.4.0 development
rimraf 2.5.1 development
testswarm 1.1.0 development

api/composer.json packagist

fakerphp/faker ^1.9.1 development
mockery/mockery ^1.3.1 development
phpunit/phpunit ^9.3 development
darkaonline/swagger-lume 8.*
laravel/lumen-framework ^8.0
php ^7.3|^8.0
symfony/http-kernel 5.3.12

api/composer.lock packagist

114 dependencies

api/vendor/brick/math/composer.json packagist

php-coveralls/php-coveralls ^2.2 development
phpunit/phpunit ^7.5.15 || ^8.5 || ^9.0 development
vimeo/psalm 4.9.2 development
ext-json *
php ^7.1 || ^8.0

api/vendor/darkaonline/swagger-lume/composer.json packagist

fzaninotto/faker ~1.8 development
mockery/mockery 1.* development
phpunit/phpunit 8.* development
satooshi/php-coveralls ^2.0 development
vlucas/phpdotenv ~3.3|~4.0 development
laravel/lumen-framework ~6.0|~7.0|^8.0
php >=7.2
swagger-api/swagger-ui ^3.0
zircote/swagger-php ~2.0|3.*

api/vendor/doctrine/annotations/composer.json packagist

doctrine/cache ^1.11 || ^2.0 development
doctrine/coding-standard ^6.0 || ^8.1 development
phpstan/phpstan ^0.12.20 development
phpunit/phpunit ^7.5 || ^8.0 || ^9.1.5 development
symfony/cache ^4.4 || ^5.2 development
doctrine/lexer 1.*
ext-tokenizer *
php ^7.1 || ^8.0
psr/cache ^1 || ^2 || ^3

api/vendor/doctrine/inflector/composer.json packagist

doctrine/coding-standard ^8.2 development
phpstan/phpstan ^0.12 development
phpstan/phpstan-phpunit ^0.12 development
phpstan/phpstan-strict-rules ^0.12 development
phpunit/phpunit ^7.0 || ^8.0 || ^9.0 development
vimeo/psalm ^4.10 development
php ^7.2 || ^8.0

api/vendor/doctrine/instantiator/composer.json packagist

doctrine/coding-standard ^8.0 development
ext-pdo * development
ext-phar * development
phpbench/phpbench ^0.13 || 1.0.0-alpha2 development
phpstan/phpstan ^0.12 development
phpstan/phpstan-phpunit ^0.12 development
phpunit/phpunit ^7.0 || ^8.0 || ^9.0 development
php ^7.1 || ^8.0

api/vendor/doctrine/lexer/composer.json packagist

doctrine/coding-standard ^9.0 development
phpstan/phpstan 1.3 development
phpunit/phpunit ^7.5 || ^8.5 || ^9.5 development
vimeo/psalm ^4.11 development
php ^7.1 || ^8.0

api/vendor/dragonmantank/cron-expression/composer.json packagist

phpstan/extension-installer ^1.0 development
phpstan/phpstan ^1.0 development
phpstan/phpstan-webmozart-assert ^1.0 development
phpunit/phpunit ^7.0|^8.0|^9.0 development
php ^7.2|^8.0
webmozart/assert ^1.0

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