pyobis - v1.6.1

What's Changed

• [fix] fixes exception in multiple scientific names in occurrence search by @ayushanand18 in https://github.com/iobis/pyobis/pull/195

Full Changelog: https://github.com/iobis/pyobis/compare/v1.6.0...v1.6.1

Biosphere - Biodiversity Data Access and Management - Jupyter Notebook
Published by 7yl4r 9 months ago

pyobis - v1.6.0

Library updates & new dataset keyword search feature.

What's Changed

• Update requirements.txt by @MehrazRumman in https://github.com/iobis/pyobis/pull/188
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/iobis/pyobis/pull/189
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/iobis/pyobis/pull/191
• build(deps): bump actions/checkout from 4 to 5 by @dependabot[bot] in https://github.com/iobis/pyobis/pull/192
• • dataset keyword search implementation, test, & version bump. by @7yl4r in https://github.com/iobis/pyobis/pull/193

Full Changelog: https://github.com/iobis/pyobis/compare/v1.5.0...v1.6.0

Biosphere - Biodiversity Data Access and Management - Jupyter Notebook
Published by 7yl4r 9 months ago

pyobis - v1.5.0

What's Changed

• updates by pre-commit.ci
• MeasurementOrFact_Analysis.ipynb notebook update by @DolapoSalim in https://github.com/iobis/pyobis/pull/178
• Caching feature by @MehrazRumman in https://github.com/iobis/pyobis/pull/179

New Contributors

• @DolapoSalim made their first contribution in https://github.com/iobis/pyobis/pull/178
• @MehrazRumman made their first contribution in https://github.com/iobis/pyobis/pull/179

Full Changelog: https://github.com/iobis/pyobis/compare/v1.4.1...v1.5.0

Biosphere - Biodiversity Data Access and Management - Jupyter Notebook
Published by 7yl4r 12 months ago

pyobis - v1.4.1

• Fixes consistency of "OccResponse in occurrences".

Full changelog: v1.4.0...v1.4.1.

Biosphere - Biodiversity Data Access and Management - Jupyter Notebook
Published by 7yl4r over 1 year ago

pyobis - v1.4.0

What's Changed

• adds pytest-vcr to tests by @ayushanand18 in https://github.com/iobis/pyobis/pull/124
• enables request size and time estimation, fixes "missing 'id' error" in non-paginated queries. by @ayushanand18 in https://github.com/iobis/pyobis/pull/127
• updates changelog with changes by #127, bump to v1.4.0 by @ayushanand18 in https://github.com/iobis/pyobis/pull/130

Full Changelog: https://github.com/iobis/pyobis/compare/v1.3.1...v1.4.0

Biosphere - Biodiversity Data Access and Management - Jupyter Notebook
Published by ayushanand18 about 3 years ago

pyobis - v1.3.1

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/iobis/pyobis/pull/119
• fixes #121 and fixes failing tests due to endpoint error by @ayushanand18 in https://github.com/iobis/pyobis/pull/122
• updates changelog to v1.3.1 by @ayushanand18 in https://github.com/iobis/pyobis/pull/123

Full Changelog: https://github.com/iobis/pyobis/compare/v1.3.0...v1.3.1

Biosphere - Biodiversity Data Access and Management - Jupyter Notebook
Published by ayushanand18 about 3 years ago

pyobis - v1.3.0

Significant changes from the last version

• UI made simpler and more intuitive with a refactored OOP approach.
• Data is now returned as a response object with its own parameters and methods.
• One-click method in every response object to convert it to a pandas DataFrame.
• Critical speed improvements up to 70%.

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/iobis/pyobis/pull/90
• fix duplicated requirement by @ocefpaf in https://github.com/iobis/pyobis/pull/89
• [update] updating changelog by @ayushanand18 in https://github.com/iobis/pyobis/pull/91
• [notebook update] Bio-mapping notebook by @ayushanand18 in https://github.com/iobis/pyobis/pull/92
• [fix] Fixing pagination in generating checklist by @ayushanand18 in https://github.com/iobis/pyobis/pull/95
• [update] Updated Google Colab links (#96) and notebook description by @ayushanand18 in https://github.com/iobis/pyobis/pull/97
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/iobis/pyobis/pull/101
• [update] Adding conda-forge installation instructions to README by @ayushanand18 in https://github.com/iobis/pyobis/pull/102
• [update] Enable Array handling for taxonids through a single query (#99) by @ayushanand18 in https://github.com/iobis/pyobis/pull/100
• [update] README: .rst -> .md by @ayushanand18 in https://github.com/iobis/pyobis/pull/104
• [update] added conda forge badge by @ayushanand18 in https://github.com/iobis/pyobis/pull/105
• Fix. Updated module description in docs. by @ayushanand18 in https://github.com/iobis/pyobis/pull/109
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/iobis/pyobis/pull/112
• [update] Making UI simpler, and easier for occurrences and checklist modules by @ayushanand18 in https://github.com/iobis/pyobis/pull/113
• [Update] Making UI simpler and an OOP refactor by @ayushanand18 in https://github.com/iobis/pyobis/pull/114
• [update] Updated docs and changelog post minor update by @ayushanand18 in https://github.com/iobis/pyobis/pull/115
• Publish docs only for releases and update GHA by @ocefpaf in https://github.com/iobis/pyobis/pull/118

New Contributors

• @pre-commit-ci made their first contribution in https://github.com/iobis/pyobis/pull/90

Full Changelog: https://github.com/iobis/pyobis/compare/v1.2.6...v1.3.0

Biosphere - Biodiversity Data Access and Management - Jupyter Notebook
Published by ayushanand18 over 3 years ago

pyobis - v1.2.6

What's Changed

• PyPI publishing should now work via github actions by @7yl4r in https://github.com/iobis/pyobis/pull/85
• use version number from the tags by @ocefpaf in https://github.com/iobis/pyobis/pull/87
• Occurrences.search function update to bring in consistency in response by @ayushanand18 in https://github.com/iobis/pyobis/pull/86 (closed #61)

Full Changelog: https://github.com/iobis/pyobis/compare/v1.2.5...v1.2.6

Biosphere - Biodiversity Data Access and Management - Jupyter Notebook
Published by 7yl4r over 3 years ago

pyobis - v1.2.5

• updated docs for v1.2.*

What's Changed

• updating notebooks after feature upgrade by @ayushanand18 in https://github.com/iobis/pyobis/pull/81

Full Changelog: https://github.com/iobis/pyobis/compare/1.2.4...v1.2.5

Biosphere - Biodiversity Data Access and Management - Jupyter Notebook
Published by 7yl4r over 3 years ago

pyobis - v1.2.4

First release in a long while so there have been many changes.

• updated to new OBIS API
• lots of improvements thanks to @ayushanand18 via GSoC and IOOS
• added several jupyter notebooks to demonstrate usage

What's Changed

• re-enable tests via GitHub Actions by @ocefpaf in https://github.com/iobis/pyobis/pull/6
• add GHA badge and remove Travis-CI by @ocefpaf in https://github.com/iobis/pyobis/pull/7
• [Fix] Integrated existing pyobis modules with OBIS v3 API by @ayushanand18 in https://github.com/iobis/pyobis/pull/8
• fix links by @7yl4r in https://github.com/iobis/pyobis/pull/10
• [Fix] Created dataset module and other module changes. by @ayushanand18 in https://github.com/iobis/pyobis/pull/11
• Fix documentation by @pushkar2112 in https://github.com/iobis/pyobis/pull/12
• Fix. Tests and MoF improved accessibility by @ayushanand18 in https://github.com/iobis/pyobis/pull/23
• Changelog Update and getting back changes undone to resolve merge conflicts by @ayushanand18 in https://github.com/iobis/pyobis/pull/25
• Added usage_guide.ipynb by @ayushanand18 in https://github.com/iobis/pyobis/pull/27
• Contributing guidelines by @ayushanand18 in https://github.com/iobis/pyobis/pull/26
• Resolving #30, #31, and #32: Modifying occurrence.search() to resolve unexpected results by @ayushanand18 in https://github.com/iobis/pyobis/pull/33
• Adding progress bar while fetching occurrence records by @ayushanand18 in https://github.com/iobis/pyobis/pull/39
• [Update] occurrence_ocean_sunfish.ipynb: 1st Jupyter Notebook by @ayushanand18 in https://github.com/iobis/pyobis/pull/37
• Fix docs by @ocefpaf in https://github.com/iobis/pyobis/pull/43
• Fix on in workflow by @ayushanand18 in https://github.com/iobis/pyobis/pull/48
• Updating README by @ayushanand18 in https://github.com/iobis/pyobis/pull/46
• [docs build] Updated all docs by @ayushanand18 in https://github.com/iobis/pyobis/pull/49
• Fixing docs workflow run by @ayushanand18 in https://github.com/iobis/pyobis/pull/51
• Adding pyproject.toml and setup.cfg, updating setup.py by @ayushanand18 in https://github.com/iobis/pyobis/pull/53
• Adding Analysing species depth - a time series analysis Notebook by @ayushanand18 in https://github.com/iobis/pyobis/pull/42
• [Jupyter Notebooks] migration_patterns.ipynb a geo-temporal analysis by @ayushanand18 in https://github.com/iobis/pyobis/pull/47
• Precommitfix by @7yl4r in https://github.com/iobis/pyobis/pull/58
• [fix] Fixing directory typo by @ayushanand18 in https://github.com/iobis/pyobis/pull/59
• Add offline test, pytest.marks for internet tests, and bare-bones pre-commit fixes. by @7yl4r in https://github.com/iobis/pyobis/pull/41
• MeasurementOrFacts analysis notebook by @ayushanand18 in https://github.com/iobis/pyobis/pull/60
• fixing #45 by adding the right after parameter by @ayushanand18 in https://github.com/iobis/pyobis/pull/64
• fixed a formatting error in the docs by @ayushanand18 in https://github.com/iobis/pyobis/pull/65
• updated docs badge and removed redundant examples from README by @ayushanand18 in https://github.com/iobis/pyobis/pull/66
• [fix] updating depth definition in docs by @ayushanand18 in https://github.com/iobis/pyobis/pull/73
• Dataset Analysis - contributions_quantification.ipynb by @ayushanand18 in https://github.com/iobis/pyobis/pull/67
• [update] changelog update and version upgrade by @ayushanand18 in https://github.com/iobis/pyobis/pull/74
• Delete obisissues.py by @7yl4r in https://github.com/iobis/pyobis/pull/77
• [feature-update] Created a response class for all modules by @ayushanand18 in https://github.com/iobis/pyobis/pull/76
• mv tests location. closes #36 by @7yl4r in https://github.com/iobis/pyobis/pull/78
• publish to PyPI by @ocefpaf in https://github.com/iobis/pyobis/pull/44
• [update] Docs Update after feature upgrade + changelog update by @ayushanand18 in https://github.com/iobis/pyobis/pull/79

New Contributors

• @ocefpaf made their first contribution in https://github.com/iobis/pyobis/pull/6
• @ayushanand18 made their first contribution in https://github.com/iobis/pyobis/pull/8
• @7yl4r made their first contribution in https://github.com/iobis/pyobis/pull/10
• @pushkar2112 made their first contribution in https://github.com/iobis/pyobis/pull/12

Full Changelog: https://github.com/iobis/pyobis/compare/v0.1.0...1.2.4

Biosphere - Biodiversity Data Access and Management - Jupyter Notebook
Published by 7yl4r over 3 years ago

pyobis - pyobis v0.1.0

0.1.0 (2016-12-12)

• first push to pypi
• finished off all OBIS API routes

0.0.6.9000 (2016-05-12)

• Updated modules with missing methods
• Added modules: groups, resources
• Removed taxon module, just a taxa module now that has all taxa/taxon methods
• Updated docs

0.0.1 (2015-12-11)

• in the works...not on pypi yet

Biosphere - Biodiversity Data Access and Management - Jupyter Notebook
Published by sckott over 9 years ago