nf-co2footprint - v1.3.0

What's Changed

• Fix: Improve report quality for extension / CLI runs by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/372
• Refactor: Move to provenance file and update related tests by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/373
• Feature: Linked data provenance file by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/374
• Fix post-run metadata, zero-value fallback, CI weighting, and provenance/AWS edge cases by @nadnein in https://github.com/nextflow-io/nf-co2footprint/pull/376
• Test: Full integration tests by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/371
• Feat: Added support for defining trace file separator in CLI run by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/378
• Fix: Cloned value, so representation map does not get deleted by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/379
• Fix: Fixed application of custom cpu power model by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/380
• Chore: Adapt to Nextflow 26.04.0 by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/382
• Fix: zero division crashes when task realtime is 0 by @nadnein in https://github.com/nextflow-io/nf-co2footprint/pull/385
• Fix floating point error and refactor Bytes for value types by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/383
• Add --delimiter argument to CLI post-run docs by @nadnein in https://github.com/nextflow-io/nf-co2footprint/pull/384
• Chore: Version 1.3.0 bump by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/386
• Fix: Add no-arg constructors for v2 config parser scope registration by @pinin4fjords in https://github.com/nextflow-io/nf-co2footprint/pull/362
• Fix: CI plot threw error due to changed variable name -> Inserted new… by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/388
• Chore: Push to master for release 1.3.0 by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/387

New Contributors

• @pinin4fjords made their first contribution in https://github.com/nextflow-io/nf-co2footprint/pull/362

Full Changelog: https://github.com/nextflow-io/nf-co2footprint/compare/1.2.1...1.3.0

Consumption - Computation and Communication - HTML
Published by JosuaCarl about 1 month ago

nf-co2footprint - v1.2.1

What's Changed

• Fix: Totals without cached tasks were bigger than all tasks by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/359
• Style/upgrade visualizations by @nadnein in https://github.com/nextflow-io/nf-co2footprint/pull/358
• Fix: %cpu of Session did not include descendants by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/360
• Fix: Skip reporting Session results when observer is not defined by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/361
• Fix: Resolve test resource paths by @nadnein in https://github.com/nextflow-io/nf-co2footprint/pull/363
• Fix: Added newlines after messages to non-ANSI console logger by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/366
• Feature: Align Nextflows's and plugins CPU percentage tracking by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/365
• Align plot height behavior in the HTML report by @nadnein in https://github.com/nextflow-io/nf-co2footprint/pull/370
• Fix cached tasks missing from HTML report by @nadnein in https://github.com/nextflow-io/nf-co2footprint/pull/369
• Chore: Bumped version to 1.2.1 by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/367
• v1.2.1 merge to main by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/368

Full Changelog: https://github.com/nextflow-io/nf-co2footprint/compare/1.2.0...1.2.1

Consumption - Computation and Communication - HTML
Published by JosuaCarl 2 months ago

nf-co2footprint - Version 1.2.0

What's Changed

• CI: Correct summary display, Documentation: Added missing SVG by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/327
• Feature: Updated config syntax by @mwhamgenomics in https://github.com/nextflow-io/nf-co2footprint/pull/321
• Fix: File Docs, CI: Docs generation only on push to master by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/328
• Feature: Tree structure of results for machine-readable output by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/313
• Feature: Incorporated the new config template by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/329
• Feature: Extension point for Nextflow pipelines by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/320
• Refactor: Market-based docs by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/331
• Fix: Html trace value table extension by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/333
• Refactor: Rename computer by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/337
• Feature: Cpu minimum correction by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/336
• Fix: Cpu minimum fix by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/339
• Small fixes by @nadnein in https://github.com/nextflow-io/nf-co2footprint/pull/340
• Fix: Report file plots & Number acceptance in config by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/335
• CI timeline plot beautification by @nadnein in https://github.com/nextflow-io/nf-co2footprint/pull/346
• Update documentation formatting and GitHub Pages deployment by @nadnein in https://github.com/nextflow-io/nf-co2footprint/pull/350
• CI: Remove stale by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/352
• Fix: Correctly accumulated dates for non-task level records by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/353
• Feature: Footprint calculation with TDP per logical core by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/354
• Feature: Workflow level trace with machine-actionable output by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/351
• Update plugin config to follow v2 parser syntax by @nadnein in https://github.com/nextflow-io/nf-co2footprint/pull/355
• Chore: V1.2.0 bump by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/356
• Chore: Dev -> Main by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/357

New Contributors

• @mwhamgenomics made their first contribution in https://github.com/nextflow-io/nf-co2footprint/pull/321

Full Changelog: https://github.com/nextflow-io/nf-co2footprint/compare/1.1.0...1.2.0

Consumption - Computation and Communication - HTML
Published by JosuaCarl 3 months ago

nf-co2footprint - Version 1.1.0

What's Changed

• Refactor: Rename outfile classes by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/278
• Refactor: Silent unique marker by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/301
• Refactor: Create report and summary file only onFlowComplete by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/296
• Feature: Base classes for config and config entries by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/277
• Fix/Refactor: Refactoring of converter, while addressing time conversion problems by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/291
• Refactor: Shorten rendering with JavaScript and JSON by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/295
• Refactor: Moved CO2 Total Metrics to tabs in HTML Report + HTML stylistic fixes by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/302
• Refactor: Simplify observer by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/303
• Refactor: Cleanup computer by removing unnecessary conversions by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/304
• Documentation: Added sample output to output.md and Quick Start by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/305
• Change CO2 to CO₂ in several files by @nadnein in https://github.com/nextflow-io/nf-co2footprint/pull/307
• Add cpuPowerModel option, make config & computer more readable by @nadnein in https://github.com/nextflow-io/nf-co2footprint/pull/306
• Update cpuPowerModel documentation by @nadnein in https://github.com/nextflow-io/nf-co2footprint/pull/311
• Feature: Collect carbon intensities during computation by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/244
• fix: hard code locale for decimals by @mashehu in https://github.com/nextflow-io/nf-co2footprint/pull/316
• Chore: Migration to new plugin template by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/314
• Fix: Update broken links by @nadnein in https://github.com/nextflow-io/nf-co2footprint/pull/319
• Update CPU TDP dataset and stabilize tests with fixed test CSV by @nadnein in https://github.com/nextflow-io/nf-co2footprint/pull/318
• Chore: CPU warning help by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/317
• Refactor: switch from the full plotly.min.js to plotljs-cartesian by @mashehu in https://github.com/nextflow-io/nf-co2footprint/pull/315
• Exclude link to docs from rendered docs by @mashehu in https://github.com/nextflow-io/nf-co2footprint/pull/322
• Feature: Separate reporting energy consumption by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/324
• Feature: Add automatic aws region detection by @nadnein in https://github.com/nextflow-io/nf-co2footprint/pull/323
• Feature: Added console output to have quick reporting by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/325
• Chore: Bumped version from 1.0.0 to 1.1.0 by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/326

Full Changelog: https://github.com/nextflow-io/nf-co2footprint/compare/1.0.0...1.1.0

Consumption - Computation and Communication - HTML
Published by JosuaCarl 7 months ago

nf-co2footprint - Version 1.0.0

Consumption - Computation and Communication - HTML
Published by nadnein 10 months ago

nf-co2footprint - Version 1.0.0-rc.3

Consumption - Computation and Communication - HTML
Published by JosuaCarl 10 months ago

nf-co2footprint - Version 1.0.0-rc.2

What's Changed

• Fix: Nextflow backwards compatibility by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/266
• Feature: Better CPU name matching by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/270
• Fix: Error logging on providing customTDPTable by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/269
• Fix/CI: CITATION.cff schema, Automated schema checking by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/271
• Chore: 1.0.0 rc.2 version bump by @JosuaCarl in https://github.com/nextflow-io/nf-co2footprint/pull/272

Full Changelog: https://github.com/nextflow-io/nf-co2footprint/compare/1.0.0-rc.1...1.0.0-rc.2 and in CHANGELOG.md

Consumption - Computation and Communication - HTML
Published by JosuaCarl 11 months ago

nf-co2footprint - Version 1.0.0-rc.1

Consumption - Computation and Communication - HTML
Published by JosuaCarl 11 months ago

nf-co2footprint - Version 1.0.0-rc

⭐ Features

• When a message is excluded from the log it is still sent to the trace level log
• Speedier Report generation through refactoring of Co2 aggregation
• Merge provided custom TDP matrices into the old TDPDataMatrix, instead of fully replacing it
• Added metric to indicate newly generated / non-cached CO2 emissions into report
• Added ciMarket to account for differences to the local grid

🛠️ Bug Fixes

• Adjusted rendering of flights to deliver percentage < 1.0 flights and number of flights afterwards
• Add null checks, fallbacks, and logging to CO₂ calculation in CO2FootprintComputer class
• Enabled access to store of CO2Records within parent methods
• Check row replacement upon supplying a customTDPDataTable

🍢 Misc

• Moved call to OS when memory is exceeded into this case to avoid unnecessary calls
• Testing with MD5 sums for file creation
• Deescalated access rights of variables for tighter scope
• Extended documentation for CO2e equivalents
• Testing of files via saved snapshots when checksum fails
• Removal of inherited methods in CO2Record
• Adjusted folder structure of tests to main
• Added a method to extend DataMatrix by rows
• Added requests to report warnings as Github issues
• Added template to report missing chips
• Changed Javascript method to use Converter methods
• Modified Aggregator to include TraceRecords for tracking of CACHED processes
• Moved non nf-hello template files into categorizing folder structure (except CO2FootprintComputer)
• Changed missing executor logging to indicate a still functioning run
• Added "How to cite" & CITATION.cff
• Added warning when using 'cloud' machineType
• Added CPUs from WikiChip to work around licensing issues
• Added CPU TDP data from WikiChip

Consumption - Computation and Communication - HTML
Published by JosuaCarl 11 months ago

nf-co2footprint - Version 1.0.0-beta1

Version 1.0.0-beta1

Features:

• Plot co2e and energy in one plot with two axis.
• Report nf-co2footprint version in co2footprint_report_*.html and co2footprint_summary_*.txt reports.
• Show Plugin parameters in html and text reports.
• Show CO2 equivalences using scientific annotations in the html reports.
• Show CO2 equivalences in text reports.
• Updated documentation.

Bug Fixes:

• Improved numbering in contribution instructions
• Improved sorting in html report summary

Consumption - Computation and Communication - HTML
Published by Bastian-Eisenmann over 1 year ago

nf-co2footprint - Version 1.0.0-beta

Initial pre-release.

Consumption - Computation and Communication - HTML
Published by skrakau over 2 years ago