BioPandas: Working with molecular structures in pandas DataFrames

BioPandas: Working with molecular structures in pandas DataFrames - Published in JOSS (2017)
https://github.com/BioPandas/biopandas

Keywords

bioinformatics computational-biology drug-discovery mol2 molecular-structures molecule molecules pandas-dataframe pdb pdb-files protein-structure

Keywords from Contributors

interactome protein genomics structural-biology

Last synced: 3 months ago
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Acceptance Criteria

Revelant topics? true
External users? true
Open source license? true
Active? true
Fork? false

Repository metadata

Working with molecular structures in pandas DataFrames

Host: GitHub
URL: https://github.com/BioPandas/biopandas
Owner: BioPandas
License: bsd-3-clause
Created: 2015-11-21T00:00:14.000Z (about 10 years ago)
Default Branch: main
Last Pushed: 2024-08-01T17:34:27.000Z (over 1 year ago)
Last Synced: 2025-10-19T21:09:26.963Z (3 months ago)
Topics: bioinformatics, computational-biology, drug-discovery, mol2, molecular-structures, molecule, molecules, pandas-dataframe, pdb, pdb-files, protein-structure
Language: Python
Homepage: https://BioPandas.github.io/biopandas/
Size: 22.3 MB
Stars: 739
Watchers: 15
Forks: 117
Open Issues: 25
Releases: 0
Metadata Files:
- Readme: README.md
- Contributing: docs/CONTRIBUTING.md
- License: LICENSE.txt
- Code of conduct: .github/CODE_OF_CONDUCT.md

Owner metadata

Name: BioPandas
Login: BioPandas
Email:
Kind: organization
Description: Working with molecular structures in pandas DataFrames
Website:
Location:
Twitter:
Company:
Icon url: https://avatars.githubusercontent.com/u/122223269?v=4
Repositories: 1
Last ynced at: 2023-03-07T16:50:57.540Z
Profile URL: https://github.com/BioPandas

GitHub Events

Total

Issues event: 1
Watch event: 32
Issue comment event: 3
Pull request review event: 1

Last Year

Issues event: 1
Watch event: 30
Issue comment event: 3
Pull request review event: 1

Committers metadata

Last synced: 3 months ago

Total Commits: 288
Total Committers: 17
Avg Commits per committer: 16.941
Development Distribution Score (DDS): 0.465

Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0

Name	Email	Commits
rasbt	m**l@s**m	154
Arian Jamasb	a**b@g**m	93
Anton Bushuiev	a**v@g**m	14
Unknown	d**w@p**e	6
AbdulHamid Merii	a**i@o**m	5
huginn	h**n@p**n	4
zehraacarsarica	z**9@g**m	2
Arian Jamasb	a**b@r**m	1
Erik Cederstrand	e**k@c**k	1
Giacomo Nunziati	7****i	1
Grigorev Rostislav	4****n	1
Kieran Didi	5****i	1
Kristian Rother	k**r@a**u	1
Marcin Wojdyr	w**r@g**m	1
Ruibin Liu	r**8@g**m	1
braniii	d**l@p**m	1
tugceoruc	t**4@g**m	1

Committer domains:

Issue and Pull Request metadata

Last synced: 5 months ago

Total issues: 45
Total pull requests: 80
Average time to close issues: 9 months
Average time to close pull requests: 8 days
Total issue authors: 28
Total pull request authors: 17
Average comments per issue: 2.13
Average comments per pull request: 1.83
Merged pull request: 71
Bot issues: 0
Bot pull requests: 0

Past year issues: 1
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 1
Past year pull request authors: 0
Past year average comments per issue: 0.0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/BioPandas/biopandas

Top Issue Authors

rasbt (7)
a-r-j (7)
dominiquesydow (3)
gate-tec (2)
gezmi (2)
mrauha (2)
btyukodi (1)
chendaniely (1)
jaydeepsb (1)
luc-j-bourhis (1)
RMeli (1)
Irlirion (1)
chrischen1 (1)
djberenberg (1)
moorepants (1)

Top Pull Request Authors

rasbt (40)
a-r-j (20)
kierandidi (4)
dominiquesydow (2)
Irlirion (2)
gezmi (2)
goniochromatic (2)
braniii (1)
SowmyaLR (1)
ecederstrand (1)
tugceoruc (1)
anton-bushuiev (1)
Ruibin-Liu (1)
wojdyr (1)
AH-Merii (1)

Top Issue Labels

enhancement (12)
bug (4)
help wanted (2)

Top Pull Request Labels

Package metadata

Total packages: 3
Total downloads: unknown
Total dependent packages: 3 (may contain duplicates)
Total dependent repositories: 17 (may contain duplicates)
Total versions: 47

proxy.golang.org: github.com/BioPandas/biopandas

Homepage:
Documentation: https://pkg.go.dev/github.com/BioPandas/biopandas#section-documentation
Licenses: bsd-3-clause
Latest release: v0.5.1 (published over 1 year ago)
Last Synced: 2025-10-26T03:10:41.465Z (3 months ago)
Versions: 18
Dependent Packages: 0
Dependent Repositories: 0
Rankings:
- Stargazers count: 2.356%
- Forks count: 2.441%
- Average: 6.294%
- Dependent packages count: 9.576%
- Dependent repos count: 10.802%

proxy.golang.org: github.com/biopandas/biopandas

Homepage:
Documentation: https://pkg.go.dev/github.com/biopandas/biopandas#section-documentation
Licenses: bsd-3-clause
Latest release: v0.5.1 (published over 1 year ago)
Last Synced: 2025-10-26T03:11:05.158Z (3 months ago)
Versions: 18
Dependent Packages: 0
Dependent Repositories: 0
Rankings:
- Stargazers count: 2.356%
- Forks count: 2.469%
- Average: 6.301%
- Dependent packages count: 9.576%
- Dependent repos count: 10.802%

conda-forge.org: biopandas

BioPandas is a library for working with Protein Databank Files(PDB) written in Python 2.7 and Python 3.6.

Homepage: http://github.com/BioPandas/biopandas
Licenses: BSD-3-Clause
Latest release: 0.4.1 (published over 3 years ago)
Last Synced: 2025-10-26T03:11:04.066Z (3 months ago)
Versions: 11
Dependent Packages: 3
Dependent Repositories: 17
Rankings:
- Dependent repos count: 8.628%
- Average: 14.403%
- Dependent packages count: 15.649%
- Stargazers count: 15.939%
- Forks count: 17.396%

Dependencies

requirements.txt pypi

numpy >=1.16.2
pandas >=0.24.2

Score: 12.467513406776728

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