graynet: single-subject morphometric networks for neuroscience connectivity applications
graynet: single-subject morphometric networks for neuroscience connectivity applications - Published in JOSS (2018)
https://github.com/raamana/graynet
Keywords
anatomical-mri cortical-network cortical-thickness feature-extraction freesurfer graph gray-matter machine-learning mindboggle network-analysis neuroimaging neuroscience structural-mri thickness vbm voxel-based
Last synced: 2 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Subject-wise networks from structural MRI, both vertex- and voxel-wise features (thickness, GM density, curvature, gyrification)
- Host: GitHub
- URL: https://github.com/raamana/graynet
- Owner: raamana
- License: mit
- Created: 2017-07-27T18:16:36.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2024-04-26T15:30:13.000Z (over 1 year ago)
- Last Synced: 2025-10-24T09:23:21.120Z (2 months ago)
- Topics: anatomical-mri, cortical-network, cortical-thickness, feature-extraction, freesurfer, graph, gray-matter, machine-learning, mindboggle, network-analysis, neuroimaging, neuroscience, structural-mri, thickness, vbm, voxel-based
- Language: Jupyter Notebook
- Homepage: https://raamana.github.io/graynet/
- Size: 33.8 MB
- Stars: 38
- Watchers: 3
- Forks: 8
- Open Issues: 7
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
Owner metadata
- Name: Pradeep Reddy Raamana
- Login: raamana
- Email:
- Kind: user
- Description: Neuroscientist trying to bridge the gap between clinic & computer science. Interests: Machine learning, Neuroimaging, Brain disorders, Informatics, Open science
- Website: crossinvalidation.com
- Location: Pittsburgh, PA
- Twitter: Raamana_
- Company: University of Pittsburgh
- Icon url: https://avatars.githubusercontent.com/u/3196357?v=4
- Repositories: 114
- Last ynced at: 2024-03-16T16:23:50.713Z
- Profile URL: https://github.com/raamana
GitHub Events
Total
- Watch event: 2
Last Year
- Watch event: 2
Committers metadata
Last synced: 2 months ago
Total Commits: 297
Total Committers: 3
Avg Commits per committer: 99.0
Development Distribution Score (DDS): 0.296
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Pradeep Reddy Raamana | r****a@g****m | 209 |
| Pradeep Reddy Raamana | p****a@r****g | 87 |
| Omer Faruk Gulban | o****n | 1 |
Committer domains:
Issue and Pull Request metadata
Last synced: 4 months ago
Total issues: 25
Total pull requests: 39
Average time to close issues: 3 months
Average time to close pull requests: 6 months
Total issue authors: 11
Total pull request authors: 3
Average comments per issue: 2.36
Average comments per pull request: 0.33
Merged pull request: 3
Bot issues: 0
Bot pull requests: 0
Past year issues: 1
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 1
Past year pull request authors: 0
Past year average comments per issue: 0.0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- raamana (11)
- jlhanson5 (4)
- qwfyuestc (2)
- minchulusa (1)
- jamesruffle (1)
- marivas-MRI (1)
- XinQi7788 (1)
- dpiccolomd (1)
- soichih (1)
- antogeo (1)
- madisonlewis323 (1)
Top Pull Request Authors
- pyup-bot (36)
- raamana (2)
- ofgulban (1)
Top Issue Labels
- help wanted (1)
- hackathon (1)
- hacktoberfest (1)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 102 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 21
- Total maintainers: 1
pypi.org: graynet
Individualized single-subject networks from T1 mri features such as cortical thickness and gray matter density.
- Homepage: https://github.com/raamana/graynet
- Documentation: https://graynet.readthedocs.io/
- Licenses: mit
- Latest release: 0.5.6 (published almost 3 years ago)
- Last Synced: 2025-10-26T03:01:50.255Z (2 months ago)
- Versions: 21
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 102 Last month
-
Rankings:
- Dependent packages count: 9.973%
- Stargazers count: 11.258%
- Forks count: 12.551%
- Average: 14.616%
- Downloads: 17.543%
- Dependent repos count: 21.754%
- Maintainers (1)
Dependencies
- hiwenet *
- networkx *
- nibabel *
- numpy *
- hiwenet *
- networkx *
- nibabel *
- numpy *
- plotly *
- scipy *
- actions/checkout v3 composite
- actions/setup-python v3 composite
- hiwenet *
- medpy *
- networkx *
- nibabel *
- numpy *
- pyradigm *
- scipy *
Score: 9.549665677579801