Python Implementation of Codon Adaptation Index
Python Implementation of Codon Adaptation Index - Published in JOSS (2018)
https://github.com/benjamin-lee/codonadaptationindex
Keywords
bioinformatics codons genetics
Keywords from Contributors
biology
Last synced: 2 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Python Implementation of Codon Adaption Index
- Host: GitHub
- URL: https://github.com/benjamin-lee/codonadaptationindex
- Owner: Benjamin-Lee
- License: mit
- Created: 2017-08-14T06:51:48.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2023-02-01T17:57:12.000Z (almost 3 years ago)
- Last Synced: 2025-10-24T10:36:26.579Z (2 months ago)
- Topics: bioinformatics, codons, genetics
- Language: Jupyter Notebook
- Homepage: https://cai.readthedocs.io
- Size: 34.8 MB
- Stars: 37
- Watchers: 3
- Forks: 11
- Open Issues: 9
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE.txt
Owner metadata
- Name: Benjamin Lee
- Login: Benjamin-Lee
- Email:
- Kind: user
- Description: NIH-OxCam scholar at @ncbi & DPhil student at Oxford. Previously @Harvard CS '20 and @IQTLabs
- Website: benjamindlee.com/about
- Location: Tysons, VA
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/13618205?u=da62ac6d9e8067acbed91adb69ed19d2886a9a4a&v=4
- Repositories: 10
- Last ynced at: 2023-02-27T05:05:13.878Z
- Profile URL: https://github.com/Benjamin-Lee
GitHub Events
Total
- Watch event: 3
- Issue comment event: 1
- Pull request event: 1
- Fork event: 2
Last Year
- Watch event: 3
- Pull request event: 1
- Fork event: 2
Committers metadata
Last synced: 2 months ago
Total Commits: 111
Total Committers: 3
Avg Commits per committer: 37.0
Development Distribution Score (DDS): 0.153
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Benjamin Lee | b****e@m****m | 94 |
| BjornFJohansson | b****b@g****m | 16 |
| C. Titus Brown | t****s@i****g | 1 |
Committer domains:
Issue and Pull Request metadata
Last synced: 3 months ago
Total issues: 11
Total pull requests: 6
Average time to close issues: 3 months
Average time to close pull requests: 4 months
Total issue authors: 8
Total pull request authors: 5
Average comments per issue: 2.18
Average comments per pull request: 0.67
Merged pull request: 2
Bot issues: 1
Bot pull requests: 1
Past year issues: 0
Past year pull requests: 2
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 0
Past year pull request authors: 2
Past year average comments per issue: 0
Past year average comments per pull request: 0.0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- BjornFJohansson (3)
- ctb (2)
- jrjhealey (1)
- ante-turudic (1)
- dependabot-preview[bot] (1)
- celiosantosjr (1)
- HarryMWinters (1)
- Benjamin-Lee (1)
Top Pull Request Authors
- BjornFJohansson (2)
- cjwatson (2)
- ctb (1)
- ewallace (1)
- renovate[bot] (1)
Top Issue Labels
- enhancement (1)
- bug (1)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 258 last-month
- Total docker downloads: 21
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 7
- Total maintainers: 1
pypi.org: cai
Python implementation of codon adaptation index
- Homepage: https://github.com/Benjamin-Lee/CodonAdaptationIndex
- Documentation: https://cai.readthedocs.io/
- Licenses: MIT
- Latest release: 1.0.3 (published about 7 years ago)
- Last Synced: 2025-10-26T03:30:14.539Z (2 months ago)
- Versions: 7
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 258 Last month
- Docker Downloads: 21
-
Rankings:
- Docker downloads count: 3.459%
- Dependent packages count: 9.995%
- Stargazers count: 12.025%
- Average: 12.731%
- Forks count: 13.31%
- Downloads: 15.87%
- Dependent repos count: 21.728%
- Maintainers (1)
Score: 10.576227923318411