covtobed: a simple and fast tool to extract coverage tracks from BAM files
covtobed: a simple and fast tool to extract coverage tracks from BAM files - Published in JOSS (2020)
https://github.com/telatin/covtobed
Keywords
alignments bam-files bed bioconda bioinformatics bioinformatics-tool sequence-coverage
Last synced: 2 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
⛰ covtobed | Convert the coverage track from a BAM file into a BED file
- Host: GitHub
- URL: https://github.com/telatin/covtobed
- Owner: telatin
- License: mit
- Created: 2019-12-09T15:18:58.000Z (about 6 years ago)
- Default Branch: master
- Last Pushed: 2025-06-17T14:19:01.000Z (7 months ago)
- Last Synced: 2025-10-26T01:37:29.139Z (2 months ago)
- Topics: alignments, bam-files, bed, bioconda, bioinformatics, bioinformatics-tool, sequence-coverage
- Language: Makefile
- Homepage:
- Size: 48.1 MB
- Stars: 44
- Watchers: 1
- Forks: 3
- Open Issues: 0
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
Owner metadata
- Name: Andrea Telatin
- Login: telatin
- Email:
- Kind: user
- Description: Bioinformatician @quadram-institute-bioscience
- Website: https://telatin.github.io/
- Location: Norwich, UK
- Twitter: telatin
- Company: Quadram Institute Bioscience
- Icon url: https://avatars.githubusercontent.com/u/15690844?v=4
- Repositories: 17
- Last ynced at: 2023-03-05T02:34:49.132Z
- Profile URL: https://github.com/telatin
GitHub Events
Total
- Issues event: 1
- Watch event: 1
- Push event: 6
- Create event: 2
Last Year
- Issues event: 1
- Watch event: 1
- Push event: 6
- Create event: 2
Committers metadata
Last synced: 2 months ago
Total Commits: 289
Total Committers: 2
Avg Commits per committer: 144.5
Development Distribution Score (DDS): 0.028
Commits in past year: 11
Committers in past year: 1
Avg Commits per committer in past year: 11.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Andrea Telatin | a****a@t****m | 281 |
| gbirolo | 4****o | 8 |
Committer domains:
- telatin.com: 1
Issue and Pull Request metadata
Last synced: 4 months ago
Total issues: 13
Total pull requests: 2
Average time to close issues: about 1 month
Average time to close pull requests: about 2 hours
Total issue authors: 5
Total pull request authors: 2
Average comments per issue: 1.69
Average comments per pull request: 0.5
Merged pull request: 1
Bot issues: 0
Bot pull requests: 0
Past year issues: 1
Past year pull requests: 1
Past year average time to close issues: N/A
Past year average time to close pull requests: about 4 hours
Past year issue authors: 1
Past year pull request authors: 1
Past year average comments per issue: 0.0
Past year average comments per pull request: 0.0
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- telatin (8)
- jdeligt (2)
- bilgehannevruz (1)
- meganpartridge (1)
- brentp (1)
Top Pull Request Authors
- codacy-badger (1)
- telatin (1)
Top Issue Labels
- enhancement (4)
- joss (3)
- bug (2)
Top Pull Request Labels
Dependencies
- actions/checkout v2 composite
- ubuntu 14.04 build
- actions/checkout v4 composite
- actions/upload-artifact v4 composite
Score: 4.477336814478206