BrainGlobe Atlas API: a common interface for neuroanatomical atlases
BrainGlobe Atlas API: a common interface for neuroanatomical atlases - Published in JOSS (2020)
https://github.com/brainglobe/brainglobe-atlasapi
Keywords
atlases brain microscopy neuroscience python registration visualisation
Keywords from Contributors
image-analysis cell-detection cellfinder keras resnet qt gtk vtk mesh plots
Last synced: 2 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
A Python interface to access neuroanatomical atlases
- Host: GitHub
- URL: https://github.com/brainglobe/brainglobe-atlasapi
- Owner: brainglobe
- License: bsd-3-clause
- Created: 2020-04-30T11:10:37.000Z (over 5 years ago)
- Default Branch: main
- Last Pushed: 2025-10-07T06:22:50.000Z (3 months ago)
- Last Synced: 2025-10-20T23:45:13.556Z (2 months ago)
- Topics: atlases, brain, microscopy, neuroscience, python, registration, visualisation
- Language: Python
- Homepage: https://brainglobe.info/documentation/brainglobe-atlasapi/index.html
- Size: 1.23 MB
- Stars: 164
- Watchers: 10
- Forks: 49
- Open Issues: 161
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
- Citation: CITATION.cff
Owner metadata
- Name: BrainGlobe
- Login: brainglobe
- Email:
- Kind: organization
- Description: Open python tools for morphological analyses in systems neuroscience
- Website: https://brainglobe.info/
- Location: London/Munich
- Twitter: brain_globe
- Company:
- Icon url: https://avatars.githubusercontent.com/u/64580400?v=4
- Repositories: 28
- Last ynced at: 2023-03-04T04:44:38.657Z
- Profile URL: https://github.com/brainglobe
GitHub Events
Total
- Fork event: 17
- Create event: 91
- Commit comment event: 1
- Release event: 8
- Issues event: 138
- Watch event: 32
- Delete event: 73
- Member event: 2
- Issue comment event: 461
- Push event: 301
- Pull request review event: 277
- Pull request review comment event: 192
- Pull request event: 203
Last Year
- Fork event: 17
- Create event: 91
- Commit comment event: 1
- Release event: 8
- Issues event: 138
- Watch event: 32
- Delete event: 73
- Member event: 2
- Issue comment event: 456
- Push event: 300
- Pull request event: 201
- Pull request review event: 277
- Pull request review comment event: 192
Committers metadata
Last synced: 2 months ago
Total Commits: 408
Total Committers: 36
Avg Commits per committer: 11.333
Development Distribution Score (DDS): 0.801
Commits in past year: 123
Committers in past year: 20
Avg Commits per committer in past year: 6.15
Development Distribution Score (DDS) in past year: 0.821
| Name | Commits | |
|---|---|---|
| Luigi Petrucco | l****o@g****m | 81 |
| Adam Tyson | c****e@a****m | 73 |
| FedeClaudi | f****i@p****m | 57 |
| pre-commit-ci[bot] | 6****] | 36 |
| Alessandro Felder | a****r | 31 |
| Harry Carey | h****5@g****m | 23 |
| Stella | 3****s | 22 |
| Igor Tatarnikov | 6****v | 16 |
| Will Graham | 3****1 | 9 |
| viktorpm | 5****m | 8 |
| David Stansby | d****y@g****m | 7 |
| KAIXIANG SHUAI | 1****y | 6 |
| carlocastoldi | 3****i | 4 |
| saimaabdus19 | 1****9 | 4 |
| Wolf | 2****f | 3 |
| Miguel Xochicale, PhD | m****e@u****k | 3 |
| Nicholas A. Del Grosso | d****k@g****m | 2 |
| Pavel Vychyk | 8****k | 2 |
| Swapnaneel Patra | 5****5 | 2 |
| kjungwoo5 | 1****5 | 2 |
| paddyroddy | p****y@g****m | 2 |
| sacha091 | s****9@g****m | 1 |
| saarah815 | 6****5 | 1 |
| pranav33317 | 1****7 | 1 |
| kirato yoshihara | 3****8 | 1 |
| Sean Martin | m****7@t****e | 1 |
| Samuel Diebolt | s****l@d****o | 1 |
| Rob Campbell | r****l | 1 |
| Oren Amsalem | o****1@m****l | 1 |
| Kimberly Meechan | 2****h | 1 |
| and 6 more... | ||
Committer domains:
- epfl.ch: 1
- textflex.com: 1
- mail.huji.ac.il: 1
- diebolt.io: 1
- tcd.ie: 1
- ucl.ac.uk: 1
- adamltyson.com: 1
Issue and Pull Request metadata
Last synced: 2 months ago
Total issues: 239
Total pull requests: 264
Average time to close issues: 5 months
Average time to close pull requests: 11 days
Total issue authors: 23
Total pull request authors: 25
Average comments per issue: 1.15
Average comments per pull request: 1.63
Merged pull request: 197
Bot issues: 0
Bot pull requests: 22
Past year issues: 110
Past year pull requests: 187
Past year average time to close issues: 21 days
Past year average time to close pull requests: 8 days
Past year issue authors: 14
Past year pull request authors: 18
Past year average comments per issue: 1.07
Past year average comments per pull request: 1.75
Past year merged pull request: 143
Past year bot issues: 0
Past year bot pull requests: 15
Top Issue Authors
- PolarBean (97)
- adamltyson (53)
- alessandrofelder (40)
- IgorTatarnikov (12)
- viktorpm (5)
- stellaprins (5)
- mxochicale (4)
- FedeClaudi (3)
- Antorhythms (3)
- carlocastoldi (2)
- dbirman (2)
- thisisrick25 (2)
- niksirbi (1)
- Robkozol (1)
- JoeZiminski (1)
Top Pull Request Authors
- stellaprins (41)
- alessandrofelder (39)
- adamltyson (35)
- PolarBean (32)
- pre-commit-ci[bot] (22)
- IgorTatarnikov (21)
- viktorpm (11)
- pranav33317 (8)
- mxochicale (7)
- Skxsmy (7)
- Wolfffff (6)
- carlocastoldi (5)
- thisisrick25 (4)
- kira1228 (4)
- saimaabdus19 (4)
Top Issue Labels
- enhancement (165)
- bug (44)
- atlasgen (41)
- new-atlas (19)
- good first issue (2)
- help wanted (1)
Top Pull Request Labels
- enhancement (6)
- bug (1)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 6,909 last-month
- Total dependent packages: 8
- Total dependent repositories: 0
- Total versions: 18
- Total maintainers: 2
pypi.org: brainglobe-atlasapi
A lightweight python module to interact with and generate atlases for systems neuroscience.
- Homepage: https://brainglobe.info/documentation/brainglobe-atlasapi/index.html
- Documentation: https://brainglobe.info/documentation/brainglobe-atlasapi/index.html
- Licenses: BSD 3-Clause License Copyright (c) 2020, BrainGlobe All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: - Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. - Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
- Latest release: 2.3.0 (published 5 months ago)
- Last Synced: 2025-10-26T02:07:43.020Z (2 months ago)
- Versions: 18
- Dependent Packages: 8
- Dependent Repositories: 0
- Downloads: 6,909 Last month
-
Rankings:
- Dependent packages count: 9.811%
- Average: 37.272%
- Dependent repos count: 64.733%
- Maintainers (2)
Dependencies
- actions/checkout v2 composite
- actions/setup-python v1 composite
- neuroinformatics-unit/actions/lint v1 composite
- neuroinformatics-unit/actions/test v1 composite
Score: 18.209370650284658