Metagenomic classification with KrakenUniq on low-memory computers
Metagenomic classification with KrakenUniq on low-memory computers - Published in JOSS (2022)
https://github.com/fbreitwieser/krakenuniq
Keywords
bioinformatics metagenomics
Keywords from Contributors
conda package-management taxonomic-classification
Last synced: 10 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
- Host: GitHub
- URL: https://github.com/fbreitwieser/krakenuniq
- Owner: fbreitwieser
- License: gpl-3.0
- Created: 2017-11-11T02:18:30.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2024-01-18T18:16:05.000Z (over 2 years ago)
- Last Synced: 2025-10-21T00:02:59.640Z (10 months ago)
- Topics: bioinformatics, metagenomics
- Language: C++
- Homepage:
- Size: 1.88 MB
- Stars: 239
- Watchers: 15
- Forks: 42
- Open Issues: 127
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
GitHub Events
Total
- Issues event: 4
- Watch event: 11
- Issue comment event: 5
- Fork event: 1
Last Year
- Issues event: 3
- Watch event: 9
- Issue comment event: 5
- Fork event: 1
Committers metadata
Last synced: 10 months ago
Total Commits: 497
Total Committers: 16
Avg Commits per committer: 31.063
Development Distribution Score (DDS): 0.447
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Florian Breitwieser | f****w@g****m | 275 |
| Aleksey Zimin | 2****n | 88 |
| Derrick Wood | d****d@c****u | 83 |
| Aleksey Zimin | a****z@s****u | 11 |
| Steven Salzberg | s****g@j****u | 9 |
| Christopher Pockrandt | n****b@c****e | 8 |
| Aleksey Zimin | a****z@s****u | 7 |
| dnbaker | d****b@c****u | 5 |
| Fredrik Boulund | b****d | 2 |
| Simon Ye | m****l@y****m | 2 |
| Andreas Sjödin | a****n@g****m | 2 |
| Ryan C Shean | r****1@g****m | 1 |
| Erik Clarke | e****e | 1 |
| Florian Breitwieser | f****r@s****u | 1 |
| Aleksey Zimin | a****z@s****u | 1 |
| Aleksey Zimin | a****z@s****u | 1 |
Committer domains:
- salz1.idies.jhu.edu: 1
- salz9.idies.jhu.edu: 1
- salz3.idies.jhu.edu: 1
- yesimon.com: 1
- cs.jhu.edu: 1
- salz4.idies.jhu.edu: 1
- cpockrandt.de: 1
- jhu.edu: 1
- salz2.idies.jhu.edu: 1
- cs.umd.edu: 1
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 93
Total pull requests: 10
Average time to close issues: about 1 month
Average time to close pull requests: about 2 months
Total issue authors: 66
Total pull request authors: 6
Average comments per issue: 2.11
Average comments per pull request: 0.5
Merged pull request: 6
Bot issues: 0
Bot pull requests: 0
Past year issues: 12
Past year pull requests: 0
Past year average time to close issues: about 19 hours
Past year average time to close pull requests: N/A
Past year issue authors: 12
Past year pull request authors: 0
Past year average comments per issue: 0.67
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- nick-youngblut (5)
- apredeus (4)
- BhawnaY16 (3)
- jvolkening (3)
- DrB-S (3)
- CuypersBart (2)
- jalalsiddiqui (2)
- shreyaramachandran (2)
- MinLuke (2)
- km-2021 (2)
- josruirod (2)
- JochenSchaefergmxde (2)
- boulund (2)
- pfeiferd (2)
- Sheerlik (2)
Top Pull Request Authors
- cpockrandt (4)
- boulund (2)
- Ethan-Hetrick (2)
- jvolkening (1)
- njohnso6 (1)
- sjaenick (1)
Top Issue Labels
Top Pull Request Labels
Dependencies
- actions/checkout v2 composite
- actions/upload-artifact v1 composite
- openjournals/openjournals-draft-action master composite
- alpine latest build
Score: 8.675222055641147