TAXPASTA: TAXonomic Profile Aggregation and STAndardisation
TAXPASTA: TAXonomic Profile Aggregation and STAndardisation - Published in JOSS (2023)
https://github.com/taxprofiler/taxpasta
Keywords
bioinformatics classification metagenomic-classification metagenomics profiling python standardisation taxonomic-classifications taxonomic-profiling
Keywords from Contributors
linting nextflow nf-core conda
Last synced: 2 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
TAXnomic Profile Aggregation and STAndardisation
- Host: GitHub
- URL: https://github.com/taxprofiler/taxpasta
- Owner: taxprofiler
- License: apache-2.0
- Created: 2022-06-03T17:06:44.000Z (over 3 years ago)
- Default Branch: dev
- Last Pushed: 2025-08-19T10:53:59.000Z (4 months ago)
- Last Synced: 2025-10-18T21:04:04.030Z (2 months ago)
- Topics: bioinformatics, classification, metagenomic-classification, metagenomics, profiling, python, standardisation, taxonomic-classifications, taxonomic-profiling
- Language: Python
- Homepage: https://taxpasta.readthedocs.io/
- Size: 1.99 MB
- Stars: 41
- Watchers: 4
- Forks: 7
- Open Issues: 13
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: .github/CONTRIBUTING.md
- License: LICENSE
- Code of conduct: .github/CODE_OF_CONDUCT.md
- Citation: CITATION.cff
- Support: .github/SUPPORT.md
Owner metadata
- Name: taxprofiler
- Login: taxprofiler
- Email:
- Kind: organization
- Description:
- Website:
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/104501065?v=4
- Repositories: 2
- Last ynced at: 2024-04-21T23:20:05.968Z
- Profile URL: https://github.com/taxprofiler
GitHub Events
Total
- Issues event: 4
- Watch event: 7
- Delete event: 1
- Issue comment event: 17
- Push event: 6
- Pull request review event: 3
- Pull request review comment event: 3
- Pull request event: 1
- Fork event: 2
- Create event: 2
Last Year
- Issues event: 4
- Watch event: 7
- Delete event: 1
- Issue comment event: 17
- Push event: 5
- Pull request review event: 3
- Pull request review comment event: 3
- Pull request event: 1
- Fork event: 2
- Create event: 2
Committers metadata
Last synced: 2 months ago
Total Commits: 618
Total Committers: 5
Avg Commits per committer: 123.6
Development Distribution Score (DDS): 0.152
Commits in past year: 16
Committers in past year: 1
Avg Commits per committer in past year: 16.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Moritz E. Beber | m****r@p****t | 524 |
| James Fellows Yates | j****3@g****m | 43 |
| Sofia Stamouli | s****i@s****e | 38 |
| maxibor | m****y@g****m | 12 |
| Tim Van Rillaer | t****r@h****m | 1 |
Committer domains:
- scilifelab.se: 1
- posteo.net: 1
Issue and Pull Request metadata
Last synced: 4 months ago
Total issues: 69
Total pull requests: 85
Average time to close issues: about 2 months
Average time to close pull requests: 5 days
Total issue authors: 19
Total pull request authors: 6
Average comments per issue: 1.71
Average comments per pull request: 1.67
Merged pull request: 78
Bot issues: 0
Bot pull requests: 0
Past year issues: 3
Past year pull requests: 1
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 3
Past year pull request authors: 1
Past year average comments per issue: 0.0
Past year average comments per pull request: 6.0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- jfy133 (25)
- Midnighter (17)
- maxibor (3)
- MajoroMask (3)
- sofstam (2)
- alexhbnr (2)
- UmaJan (1)
- prototaxites (1)
- LilyAnderssonLee (1)
- Swindle98 (1)
- paulzierep (1)
- apcamargo (1)
- kdm9 (1)
- SannaAb (1)
- nvhphuc1206 (1)
Top Pull Request Authors
- Midnighter (51)
- jfy133 (20)
- sofstam (8)
- maxibor (4)
- xuanxu (1)
Top Issue Labels
- enhancement (17)
- bug (16)
- new taxonomic profiler (9)
- documentation (3)
- question (3)
- help wanted (1)
Top Pull Request Labels
- documentation (6)
- bug (1)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 56 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 13
- Total maintainers: 3
pypi.org: taxpasta
TAXonomic Profile Aggregation and STAndardisation
- Homepage: https://github.com/taxprofiler/taxpasta
- Documentation: https://taxpasta.readthedocs.io
- Licenses: Apache Software License
- Latest release: 0.7.0 (published over 1 year ago)
- Last Synced: 2025-10-26T00:47:37.803Z (2 months ago)
- Versions: 13
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 56 Last month
-
Rankings:
- Dependent packages count: 6.633%
- Downloads: 10.687%
- Forks count: 13.564%
- Average: 15.524%
- Stargazers count: 16.126%
- Dependent repos count: 30.611%
- Maintainers (3)
Dependencies
- actions/checkout v3 composite
- actions/setup-python v3 composite
- actions/checkout v3 composite
- actions/setup-python v3 composite
- softprops/action-gh-release v0.1 composite
- depinfo ~=2.2
- numpy ~=1.20
- pandas ~=1.4
- pandera ~=0.14
- taxopy ~=0.10
- typer ~=0.6
Score: 9.675959402904095