grepq: A Rust application that quickly filters FASTQ files by matching sequences to a set of regular expressions
grepq: A Rust application that quickly filters FASTQ files by matching sequences to a set of regular expressions - Published in JOSS (2025)
https://github.com/rbfinch/grepq
Keywords
bioinformatics fastq grep grep-like grep-search grepping gzip json regex sqlite zstd
Last synced: 3 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
quickly filter fastq files by matching sequences to a set of regex patterns
- Host: GitHub
- URL: https://github.com/rbfinch/grepq
- Owner: Rbfinch
- License: mit
- Created: 2024-11-03T06:05:35.000Z (about 1 year ago)
- Default Branch: main
- Last Pushed: 2025-09-26T05:47:47.000Z (4 months ago)
- Last Synced: 2025-10-17T00:10:53.762Z (3 months ago)
- Topics: bioinformatics, fastq, grep, grep-like, grep-search, grepping, gzip, json, regex, sqlite, zstd
- Language: Rust
- Homepage: https://github.com/Rbfinch/grepq
- Size: 4.35 MB
- Stars: 54
- Watchers: 1
- Forks: 1
- Open Issues: 2
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: CONTRIBUTING.md
- License: LICENSE.md
- Citation: CITATION.cff
- Codemeta: codemeta.json
GitHub Events
Total
- Create event: 61
- Issues event: 10
- Release event: 52
- Watch event: 53
- Delete event: 4
- Issue comment event: 4
- Public event: 1
- Push event: 376
- Pull request event: 3
Last Year
- Create event: 61
- Issues event: 10
- Release event: 52
- Watch event: 53
- Delete event: 4
- Issue comment event: 4
- Public event: 1
- Push event: 376
- Pull request event: 3
Committers metadata
Last synced: 3 months ago
Total Commits: 326
Total Committers: 5
Avg Commits per committer: 65.2
Development Distribution Score (DDS): 0.712
Commits in past year: 326
Committers in past year: 5
Avg Commits per committer in past year: 65.2
Development Distribution Score (DDS) in past year: 0.712
| Name | Commits | |
|---|---|---|
| Nicholas Crosbie | n****e@M****n | 94 |
| crosbien | m****z@g****m | 89 |
| Nicholas Crosbie | n****e@M****m | 59 |
| Nicholas Crosbie | n****e@M****m | 56 |
| Nicholas Crosbie | n****e@M****l | 28 |
Committer domains:
- mac-studio-2.modem: 1
- mac-studio.modem: 1
- mac.lan: 1
Issue and Pull Request metadata
Last synced: 4 months ago
Total issues: 4
Total pull requests: 2
Average time to close issues: 28 days
Average time to close pull requests: about 19 hours
Total issue authors: 4
Total pull request authors: 2
Average comments per issue: 0.5
Average comments per pull request: 0.0
Merged pull request: 2
Bot issues: 0
Bot pull requests: 0
Past year issues: 4
Past year pull requests: 2
Past year average time to close issues: 28 days
Past year average time to close pull requests: about 19 hours
Past year issue authors: 4
Past year pull request authors: 2
Past year average comments per issue: 0.5
Past year average comments per pull request: 0.0
Past year merged pull request: 2
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- BiotechPedro (1)
- johanneskoester (1)
- nh13 (1)
- shenwei356 (1)
- PawelWojciechowski (1)
Top Pull Request Authors
- Rbfinch (1)
Top Issue Labels
- enhancement (1)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- cargo: 50,211 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 66
- Total maintainers: 1
crates.io: grepq
quickly filter fastq files
- Homepage: https://github.com/Rbfinch/grepq
- Documentation: https://docs.rs/grepq/
- Licenses: MIT
- Latest release: 1.6.5 (published 4 months ago)
- Last Synced: 2025-10-09T10:43:52.232Z (3 months ago)
- Versions: 66
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 50,211 Total
-
Rankings:
- Dependent repos count: 24.727%
- Dependent packages count: 32.795%
- Average: 51.22%
- Downloads: 96.139%
- Maintainers (1)
Score: 16.45879892410735