Vivid Volcano: Empowering Non-Bioinformaticians to Analyze Pre-Processed Omics Data
Vivid Volcano: Empowering Non-Bioinformaticians to Analyze Pre-Processed Omics Data - Published in JOSS (2025)
https://github.com/datviser/vivid-volcano
Keywords
bioinformatics genomics-visualization gsea life-sciences omics proteomics rnaseq volcano-plot
Last synced: 2 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
A shiny app for custom analyzes of preprocessed omics data
- Host: GitHub
- URL: https://github.com/datviser/vivid-volcano
- Owner: DatViseR
- License: other
- Created: 2024-10-21T11:40:23.000Z (about 1 year ago)
- Default Branch: master
- Last Pushed: 2025-09-11T08:06:53.000Z (4 months ago)
- Last Synced: 2025-10-09T10:34:20.778Z (3 months ago)
- Topics: bioinformatics, genomics-visualization, gsea, life-sciences, omics, proteomics, rnaseq, volcano-plot
- Language: HTML
- Homepage:
- Size: 31 MB
- Stars: 3
- Watchers: 1
- Forks: 1
- Open Issues: 0
- Releases: 0
-
Metadata Files:
- Readme: README.html
- Contributing: .github/CONTRIBUTING.md
- Funding: .github/FUNDING.yml
- Citation: CITATION.html
Owner metadata
- Name:
- Login: DatViseR
- Email:
- Kind: user
- Description:
- Website:
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/64078730?u=a9be3f255e34fb10e325614ea27e90890d4e5ae6&v=4
- Repositories: 3
- Last ynced at: 2023-10-20T03:12:37.812Z
- Profile URL: https://github.com/DatViseR
GitHub Events
Total
- Create event: 12
- Issues event: 1
- Release event: 7
- Watch event: 8
- Delete event: 5
- Push event: 129
- Pull request event: 13
- Fork event: 1
Last Year
- Create event: 12
- Issues event: 1
- Release event: 7
- Watch event: 8
- Delete event: 5
- Push event: 129
- Pull request event: 13
- Fork event: 1
Committers metadata
Last synced: 3 months ago
Total Commits: 341
Total Committers: 7
Avg Commits per committer: 48.714
Development Distribution Score (DDS): 0.12
Commits in past year: 341
Committers in past year: 7
Avg Commits per committer in past year: 48.714
Development Distribution Score (DDS) in past year: 0.12
| Name | Commits | |
|---|---|---|
| DatViseR | d****l@g****m | 300 |
| Tomasz Stępkowski | 6****R@u****m | 14 |
| DatViseR | d****r@g****m | 12 |
| DatViseR | D****R@g****m | 9 |
| DatViseR | t****i@n****l | 3 |
| copilot-swe-agent[bot] | 1****t@u****m | 2 |
| DatViseR | d****r@s****l | 1 |
Committer domains:
Issue and Pull Request metadata
Last synced: 4 months ago
Total issues: 1
Total pull requests: 7
Average time to close issues: N/A
Average time to close pull requests: 1 minute
Total issue authors: 1
Total pull request authors: 2
Average comments per issue: 0.0
Average comments per pull request: 0.0
Merged pull request: 5
Bot issues: 0
Bot pull requests: 0
Past year issues: 1
Past year pull requests: 7
Past year average time to close issues: N/A
Past year average time to close pull requests: 1 minute
Past year issue authors: 1
Past year pull request authors: 2
Past year average comments per issue: 0.0
Past year average comments per pull request: 0.0
Past year merged pull request: 5
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- DatViseR (1)
Top Pull Request Authors
- DatViseR (5)
- Copilot (1)
Top Issue Labels
- bug (1)
- enhancement (1)
Top Pull Request Labels
Dependencies
- actions/checkout v4 composite
- actions/upload-artifact v4 composite
- openjournals/openjournals-draft-action master composite
- R >= 4.4.0 depends
- Cairo >= 1.6 imports
- DT >= 0.33 imports
- arrow >= 17.0.0.1 imports
- bslib >= 0.8.0 imports
- colourpicker >= 1.3.0 imports
- dplyr >= 1.1.4 imports
- ggplot2 >= 3.5.1 imports
- ggrepel >= 0.9.6 imports
- ggtext >= 0.1.2 imports
- gridExtra >= 2.3 imports
- gt >= 0.11.1 imports
- htmltools >= 0.5.8 imports
- htmlwidgets >= 1.6.4 imports
- magrittr * imports
- plotly * imports
- readr * imports
- semantic.dashboard * imports
- shiny >= 1.6.0 imports
- shiny.semantic * imports
- shinyalert * imports
- shinyjs >= 2.0.0 imports
- tidyr * imports
- webshot2 * imports
- covr * suggests
- knitr >= 1.49 suggests
- rmarkdown * suggests
- testthat >= 3.0.0 suggests
Score: 3.044522437723423