GenoFLU - Version 1.07

Changes from version 1.06 to 1.07
Reference segments are denoted in red on the genotyping reference file. Color coding has been removed from the genotype_key file.
Addition of new major and minor genotypes and reassignment of minor to major genotypes meeting criteria
• B3.14
• D1.4-D1.12
• Minor107-Minor155
Addition of sub-references to account for ongoing evolution of stable segments:
• Eurasian ea1 segments (multiple genes) in the B3.13 and B3.14 genotypes
• North American am2.1 PB2 segment in the B3.14 genotype
Updated gene assignment by adding or removing a reference based on phylogeny:
• Updated PB2 gene assignment for Minor10, Minor24, Minor95, Minor99, Minor103
• Updated PB1 gene assignment for Minor25, Minor56, Minor90
• Updated NP gene assignment for Minor83
• Updated PA gene assignment for Minor52 and 94
Correction of a naming error in Minor36: Neuraminidase type is N6, not N5 – no changes to reference sequence; correction is strictly nomenclatural
Correction of the reference file for D2.1 to remove primer sequence

Biosphere - Avian Monitoring and Analysis - Python
Published by stuber 23 days ago

GenoFLU - Version 1.06

• Percent ID option
• D2.1 update
• Database updates
• Documentation updates

Biosphere - Avian Monitoring and Analysis - Python
Published by stuber about 1 year ago

GenoFLU - Version 1.05

Documentation update.
Updated D genotype references

Biosphere - Avian Monitoring and Analysis - Python
Published by stuber over 1 year ago

GenoFLU - Version 1.04

Documentation update.
FASTA dependency and key update.

Biosphere - Avian Monitoring and Analysis - Python
Published by stuber over 1 year ago

GenoFLU - Version 1.03

FASTA dependency and key update.

Biosphere - Avian Monitoring and Analysis - Python
Published by stuber almost 2 years ago