ecosyste.ms

Open Sustainable Technology

A curated list of open technology projects to sustain a stable climate, energy supply, biodiversity and natural resources.

Recent Releases of EcoAssist

EcoAssist - AddaxAI v6.10

Fix bug for incomplete AddaxAI JSON conversion
Update SpeciesNet params properly at initiation

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 23 days ago

EcoAssist - AddaxAI v6.09

Google's global species identification model added

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 26 days ago

EcoAssist - AddaxAI v6.08

Solved GPU not found on Windows NVIDIA GPUs
Added Sensing Clues export format TSV

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 28 days ago

EcoAssist - AddaxAI v6.07

Enables downloading of virtual environments during runtime to reduce size
Fix 'ModuleNotFoundError: No module named 'tensorflow_addons'' error when running Peruvian Amazon model

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 29 days ago

EcoAssist - AddaxAI v6.06

Allow full image classifiers

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren about 1 month ago

EcoAssist - AddaxAI v6.05

Fixed bug leading to "UnboundLocalError"

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren about 1 month ago

EcoAssist - AddaxAI v6.04

Fixed bug leading to "No such file or directory"
Fixed bug leading to "UnidentifiedImageError"

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren about 1 month ago

EcoAssist - AddaxAI v6.03

New European model (v1.3)

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren about 2 months ago

EcoAssist - AddaxAI v6.02

Allow installation for all users as opposed to single user only
Fix issue with COCO format and images without metadata
Added functionality to blur people from images
Made AddaxAI backwards compatible with JSON files created with EcoAssist versions

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 2 months ago

EcoAssist - AddaxAI v6.01

To avoid any legal concerns, we have renamed the project from EcoAssist to AddaxAI. The project itself remains the same—only the name has changed. The new website is: addaxdatascience.com/addaxai

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 2 months ago

EcoAssist - EcoAssist v5.29

New input data formats:
- images: '.jpg', '.jpeg', '.gif', '.png', '.tif', '.tiff', and '.bmp'
- videos: '.mp4', '.avi', '.mpeg', '.mpg', '.mov', and '.mkv'
New feature to select line width and font size for image visualization (XS, S, M, L, XL)

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 3 months ago

EcoAssist - EcoAssist v5.28

Added CV4Ecology workshop inference code
Removed redundant EXE files to avoid anti virus reports

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 3 months ago

EcoAssist - EcoAssist v5.27

Bug fix for Windows users and the human-in-the-loop annotation feature.

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 3 months ago

EcoAssist - EcoAssist v5.26

This version has:

adjusted environment names for Linux users
added local install of PyQt5 and pyrcc5 command for human in the loop feature
added open.command for Linux users

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 3 months ago

EcoAssist - EcoAssist v5.25

Truncated images can now be read and analysed by the classification models.

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 3 months ago

EcoAssist - EcoAssist v5.24

And again fixed some additional bugs ;)

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 3 months ago

EcoAssist - EcoAssist v5.23

Fixed some initial bugs related to the new automated install.

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 3 months ago

EcoAssist - EcoAssist v5.22

This release incorporates a new method of installation that hopefully bypasses restrictions on locked down machines. It removes the dependency for conda and uses a graphical user interface during the installation.

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 3 months ago

EcoAssist - EcoAssist v5.21

Enhanced video handling capabilities and integration with the latest video features in Timelapse.

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v5.20...v5.21

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 5 months ago

EcoAssist - EcoAssist v5.20

Beta-version with per-frame video visualisations using Timelapse integration.

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v5.19...v5.20

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 5 months ago

EcoAssist - EcoAssist v5.19

Added the new version of the European species identification model (Deepfaune v1.2).

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v5.18...v5.19

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 6 months ago

EcoAssist - EcoAssist v5.18

Added new species identification model for Kirghizistan fauna.

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v5.17...v5.18

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 7 months ago

EcoAssist - EcoAssist v5.17

Fixed installation bug
Fixed problems with Southwest USA model for CPU users

What's Changed

fix broken link into MD repo, minor typo fixes by @agentmorris in https://github.com/PetervanLunteren/EcoAssist/pull/54

New Contributors

@agentmorris made their first contribution in https://github.com/PetervanLunteren/EcoAssist/pull/54

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v5.16...v5.17

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 7 months ago

EcoAssist - EcoAssist v5.16

Includes a new species identification model for Southwest USA with 27 classes. Developed by the San Diego Zoo Wildlife Alliance.

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v5.15...v5.16

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 8 months ago

EcoAssist - EcoAssist v5.15

Added a check for corrupted files and the option to repair them before starting annotation session.

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 8 months ago

EcoAssist - EcoAssist v5.14

New export in COCO format.

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 9 months ago

EcoAssist - EcoAssist v5.13

Facilitates the deployment of the new Peruvian Andes model.

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 9 months ago

EcoAssist - EcoAssist v5.12

This version fixes the bug that linked incorrect labels to detections in custom MEWC models.

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 10 months ago

EcoAssist - EcoAssist v5.11

This update includes the beta version for the Timelapse incorporation. Soon users will be able to deploy models via EcoAssist directly from Timelapse.

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 10 months ago

EcoAssist - EcoAssist v5.10

Supports the deployment of the Peruvian Amazon model.

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v.5.4...v5.10

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 10 months ago

EcoAssist - EcoAssist v5.9

Fixed bug with NaN datetimes
Fixed draw square bbox bug

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v.5.8...v.5.9

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 10 months ago

EcoAssist - EcoAssist v5.8

Added smoothing feature to reduce noise by averaging predictions over images, videos and sequences.

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v.5.7...v.5.8

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 10 months ago

EcoAssist - EcoAssist v5.7

Generate plots, graphs and maps based on the detections.

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v.5.6...v.5.7

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 11 months ago

EcoAssist - EcoAssist v5.6

This version is compatible with the PytorchWildlife Amazon Rainforest model.

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v.5.5...v.5.6

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 11 months ago

EcoAssist - EcoAssist v5.5

Adjusted code to import MEWC class_list.yaml

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v5.4...v.5.5

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 11 months ago

EcoAssist - EcoAssist v5.4

Fixed conda init bug and finalised NZ model.

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v5.3...v5.4

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren 11 months ago

EcoAssist - EcoAssist v5.3

Adjusted code for the new NZ species identification model.

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v5.2...v5.3

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren about 1 year ago

EcoAssist - EcoAssist v5.2

Added DeepFaune v1.1 model to the list of classifiers.

What's Changed

Add DeepFaune v1.1 by @PetervanLunteren in https://github.com/PetervanLunteren/EcoAssist/pull/38

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v5.0...v5.2

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren about 1 year ago

EcoAssist - EcoAssist v5.1

Moved PyQt5 dependency to PySide6 for Unix systems to avoid HomeBrew dependency and extra install.

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v.5.0...v5.1

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren about 1 year ago

EcoAssist - EcoAssist v5.0

new window: simple mode
saves user settings
incorporated Namibian species model
automatic model download
switch between virtual environments

What's Changed

Update to v5.0 by @PetervanLunteren in https://github.com/PetervanLunteren/EcoAssist/pull/34

New Contributors

@PetervanLunteren made their first contribution in https://github.com/PetervanLunteren/EcoAssist/pull/34

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v4.4...v.5.0

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren about 1 year ago

EcoAssist - EcoAssist v4.4

In previous versions of EcoAssist (v3.0 > v4.3) it was possible to train your own object detection models based on MegaDetector to detect your target species. Although this did work, it wasn't the best approach to develop a species recognition model. It required lots of training data, processing power, time, electricity and wasn't very accurate. Advancing insights revealed that better results can be obtained by using a object classification model to be used in conjunction with the results of MegaDetector. The animals will then be located by MegaDetector, and further classified by your custom model. EcoAssist > v4.2 does support the deployment of a classification model to be used in conjunction with MegaDetector, but training such a model is more complicated and hasn't been incorporated into EcoAssist (yet).

Further:

new logo
fixed scroll issues
moved documentation to https://addaxdatascience.com/ecoassist/

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v4.3...v4.4

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren over 1 year ago

EcoAssist - EcoAssist v4.3

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v4.2...v4.3

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren over 1 year ago

EcoAssist - EcoAssist v4.2

Annotation in xml to be able to store more information
human in the loop feature
minor fixes

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v4.1...v4.2

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren over 1 year ago

EcoAssist - EcoAssist v4.1

Added human-in-the-loop functionality to verify detections and create training data. Possibility to select an image subset based on specific classes, confidence ranges, and selection methods.

What's Changed

Automatic localization of git and conda during Windows installation by @BobbyCephy in https://github.com/PetervanLunteren/EcoAssist/pull/11
Copied Exif data from source image during post processing by @ehallein in https://github.com/PetervanLunteren/EcoAssist/pull/14

New Contributors

@BobbyCephy made their first contribution in https://github.com/PetervanLunteren/EcoAssist/pull/11

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v4.0...v4.1

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren over 1 year ago

EcoAssist - EcoAssist v4.0

Added functionality to train object detection models and fixed bugs.

What's Changed

Fixed a CUDA out of memory bug by @ehallein in https://github.com/PetervanLunteren/EcoAssist/pull/7

Full Changelog: https://github.com/PetervanLunteren/EcoAssist/compare/v3.0...v4.0

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren almost 2 years ago

EcoAssist - EcoAssist v3.0

New interface
Postprocessing features work with custom classes
Accommodates both new and old yolov5 models
Separate confidence thresholds per feature
New feature to sort data based on confidence

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren about 2 years ago

EcoAssist - EcoAssist v2.2

All features work with relative path
New option to copy or move files when separated
Fixed bug regarding faulty checkpoint frequency and sample rate
Lowered the default threshold for images to 0.1 and videos to 0.2
Improved information text about threshold values and further processing in Timelapse
Added message box after processing if created .xml files

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren over 2 years ago

EcoAssist - EcoAssist v2.1

Bug fixes and thoroughly tested.

Features:

Use either MDv5a or MDv5b to tag animals, persons and vehicles in both images and video's
Filter out empty images, people, vehicles or animals
Review and edit annotations using the open-source annotation software labelImg
Create input file for further processing in Timelapse
Export .xml label files in Pascal VOC format for further model training
Manipulate data by drawing boxes or cropping detections
Use custom models trained from MDv5 using transfer learning

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren over 2 years ago

EcoAssist - v2.0

adopted to windows, linux and osx
suitable for gpu accelerated computers
using latest MDv5 model

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren over 2 years ago

EcoAssist - v1.0

suitable for OSx computers
using MDv4 model

Biosphere - Terrestrial Wildlife - Python
Published by PetervanLunteren over 2 years ago