pybioclip

Python package that simplifies using the BioCLIP foundation model.
https://github.com/imageomics/pybioclip

Category: Biosphere
Sub Category: Biodiversity Data Access and Management

Last synced: 12 minutes ago
JSON representation

Repository metadata

Python package that simplifies using the BioCLIP foundation model.

• Host: GitHub
• URL: https://github.com/imageomics/pybioclip
• Owner: Imageomics
• License: mit
• Created: 2024-03-28T20:12:01.000Z (about 1 year ago)
• Default Branch: main
• Last Pushed: 2025-04-07T23:17:19.000Z (23 days ago)
• Last Synced: 2025-04-19T16:36:27.164Z (11 days ago)
• Language: Python
• Homepage: https://imageomics.github.io/pybioclip/
• Size: 3.41 MB
• Stars: 27
• Watchers: 3
• Forks: 6
• Open Issues: 6
• Releases: 6
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Citation: CITATION.cff
  • Zenodo: .zenodo.json

README.md

@software{Bradley_pybioclip_2025,
author = {Bradley, John and Lapp, Hilmar and Campolongo, Elizabeth G.},
doi = {10.5281/zenodo.13151194},
month = feb,
title = {{pybioclip}},
version = {1.3.2},
year = {2025}
}

@inproceedings{stevens2024bioclip,
  title = {{B}io{CLIP}: A Vision Foundation Model for the Tree of Life}, 
  author = {Samuel Stevens and Jiaman Wu and Matthew J Thompson and Elizabeth G Campolongo and Chan Hee Song and David Edward Carlyn and Li Dong and Wasila M Dahdul and Charles Stewart and Tanya Berger-Wolf and Wei-Lun Chao and Yu Su},
  booktitle={Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR)},
  year = {2024}
}

@software{bioclip2023code,
  author = {Samuel Stevens and Jiaman Wu and Matthew J. Thompson and Elizabeth G. Campolongo and Chan Hee Song and David Edward Carlyn},
  doi = {10.5281/zenodo.10895871},
  title = {BioCLIP},
  version = {v1.0.0},
  year = {2024}
}

Citation (CITATION.cff)

cff-version: 1.2.0
title: pybioclip
message: If you use this software, please cite both the conference paper from references section and the software itself.
type: software
authors:
  - given-names: John
    family-names: Bradley
  - given-names: Hilmar
    family-names: Lapp
  - family-names: Campolongo
    given-names: "Elizabeth G."
identifiers:
  - type: doi
    value: 10.5281/zenodo.13151194
  - description: "The GitHub release URL of tag 1.3.2."
    type: url
    value: "https://github.com/Imageomics/pybioclip/releases/tag/1.3.2"
  - description: "The GitHub URL of the commit tagged with 1.3.2."
    type: url
    value: "https://github.com/Imageomics/pybioclip/tree/c318c6c9f2bc75c4da6ac060927623de69331344"
repository-code: 'https://github.com/Imageomics/pybioclip'
url: 'https://github.com/Imageomics/pybioclip'
abstract: Python package and command line tool that simplifies using the BioCLIP foundation model.
keywords:
  - clip
  - biology
  - CV
  - imageomics
  - animals
  - species
  - images
  - taxonomy
  - "rare species"
  - "endangered species"
  - "evolutionary biology"
  - multimodal
  - "knowledge-guided"
  - python
  - "command line"
  - bioclip
  - plants
  - fungi
  - genus
  - "image classification"
license: MIT
version: 1.3.2
date-released: '2025-03-13'
references:
- type: conference-paper
  title: "BioCLIP: A Vision Foundation Model for the Tree of Life"
  authors:
    - family-names: Stevens
      given-names: Samuel
    - family-names: Wu
      given-names: Jiaman
    - family-names: Thompson
      given-names: "Matthew J."
    - family-names: Campolongo
      given-names: "Elizabeth G."
    - family-names: Song
      given-names: "Chan Hee"
    - family-names: Carlyn
      given-names: "David Edward"
    - family-names: Dong
      given-names: Li
    - family-names: Dahdul
      given-names: "Wasila M"
    - family-names: Stewart
      given-names: Charles
    - family-names: "Berger-Wolf"
      given-names: Tanya
    - family-names: Chao
      given-names: "Wei-Lun"
    - family-names: Su
      given-names: Yu
  version: 1.0.0
  doi: "10.5281/zenodo.10895871"
  date-released: "2024-03-29"

Owner metadata

• Name: Imageomics Institute
• Login: Imageomics
• Email:
• Kind: organization
• Description:
• Website: https://imageomics.osu.edu
• Location:
• Twitter: imageomics
• Company:
• Icon url: https://avatars.githubusercontent.com/u/77468321?v=4
• Repositories: 4
• Last ynced at: 2023-03-05T05:05:36.574Z
• Profile URL: https://github.com/Imageomics

GitHub Events

Total

• Create event: 36
• Release event: 3
• Issues event: 49
• Watch event: 8
• Delete event: 27
• Issue comment event: 110
• Push event: 204
• Gollum event: 19
• Pull request event: 50
• Pull request review comment event: 76
• Pull request review event: 149
• Fork event: 3

Last Year

• Create event: 36
• Release event: 3
• Issues event: 49
• Watch event: 8
• Delete event: 27
• Issue comment event: 110
• Push event: 204
• Gollum event: 19
• Pull request event: 50
• Pull request review comment event: 76
• Pull request review event: 149
• Fork event: 3

Committers metadata

Last synced: about 18 hours ago

Committer domains:

• drycafe.net: 1

Issue and Pull Request metadata

Last synced: 1 day ago

Package metadata

• Total packages: 1
• Total downloads:
  • pypi: 387 last-month
• Total dependent packages: 0
• Total dependent repositories: 0
• Total versions: 6
• Total maintainers: 2

Score: 10.846381266204817