pyrealm - Version 2.0.0 Release Candidate 3

This adds some minor changes to fix some issues with the experimental demography module.

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/477
• Moving potential_gpp calculation outside StemAllocation by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/480
• Updating CohortMethods to handle a count attribute in subclasses by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/481
• Changes and version bump for 2.0.0-rc.3 by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/483

Full Changelog: https://github.com/ImperialCollegeLondon/pyrealm/compare/v2.0.0-rc.2...v2.0.0-rc.3

Biosphere - Plants and Vegetation - Python
Published by davidorme 17 days ago

pyrealm - v2.0.0-rc.2

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/377
• Added mm/m2 to moles, tests, fixed docs by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/379
• Convert JmaxLimitation to a registry of subclasses by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/393
• Fixing formatting in QuantumYieldABC by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/398
• Implementation of Arrhenius methods by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/389
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/381
• Make summarize_attrs use non-mutable tuple as attrs argument by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/404
• Adding convert_water_mm_to_moles and calculate_water_molar_volume by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/400
• New BoundsChecker implementation by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/409
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/411
• New PModelEnvironment implementation by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/412
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/417
• Aligning PModel and Subdaily PModel by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/401
• Update poetry to version 2.0 by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/421
• Develop the AcclimationModel class by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/418
• Actually use the new AcclimationModel by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/424
• Update docs to new P Model API by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/426
• Removing old PModel implementations by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/427
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/428
• Swap pmodel.functions over to use tk as needed by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/431
• Update default values for phi0 by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/432
• Arrhenius class should have simpler signature and __init__ by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/434
• Rework PModelConsts and usage in functions by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/435
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/437
• Revise the migration guide and changes doc by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/440
• Revise the P Model documentation by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/441
• Replacing np.allclose by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/382
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/444
• New version of the P Model architecture by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/442
• Update two leaf irradiance to V2.0.0 by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/445
• Adding two leaf irradience model by @j-emberton in https://github.com/ImperialCollegeLondon/pyrealm/pull/245
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/447
• Updated golden dataset for phenology module by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/448
• Doc updates for 2.0.0 by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/450
• Revise P Model attributes by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/452
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/457
• Rework of pyrealm.core.solar and downstream changes. by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/456
• Interim experimental markup implementation by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/454
• Adding fortnightly model to phenology golden dataset by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/465
• 459 review two leaf model by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/462
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/466
• Example usage page for two leaf two stream model by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/470
• Marking experimental classes by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/473
• Update documentation T model by @arne-exe in https://github.com/ImperialCollegeLondon/pyrealm/pull/472
• Adding plant reproductive tissue respiration and turnover by @sallymatson in https://github.com/ImperialCollegeLondon/pyrealm/pull/461
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/474
• Unpinning numpy 2.2, updating pyproject.toml for 2.0.0-rc.2 by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/475

New Contributors

• @arne-exe made their first contribution in https://github.com/ImperialCollegeLondon/pyrealm/pull/472
• @sallymatson made their first contribution in https://github.com/ImperialCollegeLondon/pyrealm/pull/461

Full Changelog: https://github.com/ImperialCollegeLondon/pyrealm/compare/v2.0.0-rc.1...v2.0.0-rc.2

Biosphere - Plants and Vegetation - Python
Published by davidorme 27 days ago

pyrealm - Publish v2.0.0 release candidate 1

What's Changed

• Merging release 1.0.0 changes back into develop by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/252
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/253
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/260
• Fix copyright date by @j-emberton in https://github.com/ImperialCollegeLondon/pyrealm/pull/255
• Updating xarray by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/258
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/265
• Allow P Models to accept an array of kphio values by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/263
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/268
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/273
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/275
• Initial draft of new quantum yield module by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/267
• Implementation of Flora and PlantFunctionalType by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/277
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/280
• Implementation of Community object init and factory methods. by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/282
• Fixed incorrect yield value in TModelConst and updated regression tests by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/283
• Complete implementation of T model functions by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/285
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/287
• Replace use of pandas in pyrealm.demography by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/292
• Implementation of the canopy model by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/288
• Add Flora helper methods by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/296
• Revert "Add Flora helper methods" by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/299
• Update traits data structures by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/300
• Minor updates to T Model functions and testing by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/303
• Add StemAllometry class by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/306
• Add StemAllocation class by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/308
• Update canopy profile branch with stem allocation changes. by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/310
• Add CrownProfile class by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/311
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/294
• Add user docs demonstrating demography traits and crown properties by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/313
• Fix notebook code formatting by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/330
• Move pyrealm_build_data documentation into an autodoc style setup by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/331
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/320
• Fastslow initval by @surbhigoel77 in https://github.com/ImperialCollegeLondon/pyrealm/pull/190
• Revise and document functionality of canopy and crown by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/328
• Calculate canopy light extinction and interception by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/318
• Updating and systematising NDArray typing by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/335
• Revise cohort structure inside community by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/340
• Group internal attributes in canopy into data classes by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/341
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/339
• Shared base classes for demography classes by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/338
• 236 develop pyrealmcoresolar function radiation calc library by @j-emberton in https://github.com/ImperialCollegeLondon/pyrealm/pull/237
• Fix bug in profiling code and create profiling CI by @MarionBWeinzierl in https://github.com/ImperialCollegeLondon/pyrealm/pull/346
• Review validation and shapes in demography by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/342
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/343
• Upgrade upload-artifact version by @MarionBWeinzierl in https://github.com/ImperialCollegeLondon/pyrealm/pull/357
• Manual/semi-automatic performance regression checking by @MarionBWeinzierl in https://github.com/ImperialCollegeLondon/pyrealm/pull/356
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/355
• Adding regression test data for phenology by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/360
• Updating mypy in poetry to version 1 by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/365

Full Changelog: https://github.com/ImperialCollegeLondon/pyrealm/compare/v1.0.0a5-test...v2.0.0rc1

Biosphere - Plants and Vegetation - Python
Published by davidorme 5 months ago

pyrealm - Version 1.0.0

What's Changed

• Merge release/0.10.1 back into develop. by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/80
• added license file by @MarionBWeinzierl in https://github.com/ImperialCollegeLondon/pyrealm/pull/86
• Fixing pre-commit issues and updating pre-commit config by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/93
• Added draft CITATION.cff by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/88
• Improved README and new CONTRIBUTING by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/91
• Fix doctests by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/92
• Adds minimum example to README by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/97
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/99
• Extend python versions covered to include Python 3.11 by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/102
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/103
• Update of water density and viscosity functions by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/100
• Add docstrings to tests by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/104
• Adding coverage reports by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/105
• Fixing PR incompatibility pileup. by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/106
• Added coverage report output step to GA pytest step by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/107
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/109
• 56 check requirements and ensure that these are consistent between pyprojecttoml and poetry by @MarionBWeinzierl in https://github.com/ImperialCollegeLondon/pyrealm/pull/111
• Updated README and code of conduct. by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/113
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/114
• Update reference links to use alp style. by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/115
• Building out better structured data package of golden outputs and example data. by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/108
• Bad syntax in developers.md by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/116
• Profiling by @a-smith-github in https://github.com/ImperialCollegeLondon/pyrealm/pull/85
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/118
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/137
• Split pmodel file by @MarionBWeinzierl in https://github.com/ImperialCollegeLondon/pyrealm/pull/136
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/138
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/148
• Update CONTRIBUTING.md by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/146
• Updating the information on generating profiling call graph by @surbhigoel77 in https://github.com/ImperialCollegeLondon/pyrealm/pull/147
• Split the tests directory into unit and regression by @surbhigoel77 in https://github.com/ImperialCollegeLondon/pyrealm/pull/151
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/155
• Add profiling to CI workflow by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/156
• Update pyproject.toml by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/154
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/157
• Create core module by @MarionBWeinzierl in https://github.com/ImperialCollegeLondon/pyrealm/pull/139
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/160
• Add small dataset for profiling by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/149
• Implementation of SPLASH 1.0 in pyrealm by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/69
• hotfix test_evap.py by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/171
• Let flake8 ignore E203 by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/176
• Add unit tests for splash by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/170
• Draft implementation of new OptimalChi structure by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/172
• Update to the latest versions of checkout and setup-python actions by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/180
• Fixing missing attribute docstrings in core.calendar by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/182
• Profiling of the Splash module by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/181
• New subdaily pmodel implementation by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/183
• Add code to generate SPLASH golden datasets by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/185
• Allowing incomplete days by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/194
• Remove outdated FastSlowPModel by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/199
• Fix time handling in Splash by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/186
• Handle NaNs when calculating max difference in Splash.estimate_initial_soil_moisture by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/193
• Use a function eval_poly for polynomial evaluation by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/187
• Update profiling/report.py and its documentation by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/188
• Setup trusted publishing by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/200
• Fix for RTD build environment by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/204
• Remove support for Python 3.9 by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/202
• Fixing profiling issues by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/208
• Fixing profile workflow by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/211
• Python version bug in pyrealm_profiling.yaml by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/214
• Add unit tests by @surbhigoel77 in https://github.com/ImperialCollegeLondon/pyrealm/pull/153
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/221
• Switched to pre-commit.ci by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/218
• Scaling profiling datasets by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/216
• Updating development docs by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/212
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/228
• Fixing profiling and comparing profiling implementations by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/225
• Baseline data and code for two leaf model by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/240
• Simplify the jupyter kernelspec setup by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/247
• Rebuild of QA chain using ruff by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/220
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/243
• 248 numpy 2 0 migration by @j-emberton in https://github.com/ImperialCollegeLondon/pyrealm/pull/251
• Updated module import in pmodel unit tests by @surbhigoel77 in https://github.com/ImperialCollegeLondon/pyrealm/pull/250
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/249
• Release version 1.0.0 by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/233

New Contributors

• @MarionBWeinzierl made their first contribution in https://github.com/ImperialCollegeLondon/pyrealm/pull/86
• @a-smith-github made their first contribution in https://github.com/ImperialCollegeLondon/pyrealm/pull/85
• @tztsai made their first contribution in https://github.com/ImperialCollegeLondon/pyrealm/pull/146
• @surbhigoel77 made their first contribution in https://github.com/ImperialCollegeLondon/pyrealm/pull/147
• @pre-commit-ci made their first contribution in https://github.com/ImperialCollegeLondon/pyrealm/pull/221
• @j-emberton made their first contribution in https://github.com/ImperialCollegeLondon/pyrealm/pull/251

Full Changelog: https://github.com/ImperialCollegeLondon/pyrealm/compare/0.10.1...v1.0.0

Biosphere - Plants and Vegetation - Python
Published by davidorme 10 months ago

pyrealm - v1.0.0a5-test test-pypi-only

What's Changed

• Version 0.10.0 release by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/73
• Release 0.10.1 by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/79
• Baseline data and code for two leaf model by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/240
• Simplify the jupyter kernelspec setup by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/247
• Rebuild of QA chain using ruff by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/220
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/243
• 248 numpy 2 0 migration by @j-emberton in https://github.com/ImperialCollegeLondon/pyrealm/pull/251
• Updated module import in pmodel unit tests by @surbhigoel77 in https://github.com/ImperialCollegeLondon/pyrealm/pull/250
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/249

New Contributors

• @j-emberton made their first contribution in https://github.com/ImperialCollegeLondon/pyrealm/pull/251

Full Changelog: https://github.com/ImperialCollegeLondon/pyrealm/compare/v1.0.0a4-test...v1.0.0a5-test

Biosphere - Plants and Vegetation - Python
Published by davidorme 10 months ago

pyrealm - Release v1.0.0a4 test-pypi-only

What's Changed

• Fixing profiling issues by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/208
• Fixing profile workflow by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/211
• Python version bug in pyrealm_profiling.yaml by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/214
• Add unit tests by @surbhigoel77 in https://github.com/ImperialCollegeLondon/pyrealm/pull/153
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/221
• Switched to pre-commit.ci by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/218
• Scaling profiling datasets by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/216
• Updating development docs by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/212
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/ImperialCollegeLondon/pyrealm/pull/228
• Fixing profiling and comparing profiling implementations by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/225

New Contributors

• @pre-commit-ci made their first contribution in https://github.com/ImperialCollegeLondon/pyrealm/pull/221

Full Changelog: https://github.com/ImperialCollegeLondon/pyrealm/compare/v1.0.0a3-test...v1.0.0a4-test

Biosphere - Plants and Vegetation - Python
Published by davidorme 12 months ago

pyrealm - v1.0.0a3-test test-pypi-only

What's Changed

• Merge release/0.10.1 back into develop. by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/80
• added license file by @MarionBWeinzierl in https://github.com/ImperialCollegeLondon/pyrealm/pull/86
• Fixing pre-commit issues and updating pre-commit config by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/93
• Added draft CITATION.cff by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/88
• Improved README and new CONTRIBUTING by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/91
• Fix doctests by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/92
• Adds minimum example to README by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/97
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/99
• Extend python versions covered to include Python 3.11 by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/102
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/103
• Update of water density and viscosity functions by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/100
• Add docstrings to tests by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/104
• Adding coverage reports by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/105
• Fixing PR incompatibility pileup. by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/106
• Added coverage report output step to GA pytest step by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/107
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/109
• 56 check requirements and ensure that these are consistent between pyprojecttoml and poetry by @MarionBWeinzierl in https://github.com/ImperialCollegeLondon/pyrealm/pull/111
• Updated README and code of conduct. by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/113
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/114
• Update reference links to use alp style. by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/115
• Building out better structured data package of golden outputs and example data. by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/108
• Bad syntax in developers.md by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/116
• Profiling by @a-smith-github in https://github.com/ImperialCollegeLondon/pyrealm/pull/85
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/118
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/137
• Split pmodel file by @MarionBWeinzierl in https://github.com/ImperialCollegeLondon/pyrealm/pull/136
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/138
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/148
• Update CONTRIBUTING.md by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/146
• Updating the information on generating profiling call graph by @surbhigoel77 in https://github.com/ImperialCollegeLondon/pyrealm/pull/147
• Split the tests directory into unit and regression by @surbhigoel77 in https://github.com/ImperialCollegeLondon/pyrealm/pull/151
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/155
• Add profiling to CI workflow by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/156
• Update pyproject.toml by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/154
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/157
• Create core module by @MarionBWeinzierl in https://github.com/ImperialCollegeLondon/pyrealm/pull/139
• Update pre-commit hooks by @github-actions in https://github.com/ImperialCollegeLondon/pyrealm/pull/160
• Add small dataset for profiling by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/149
• Implementation of SPLASH 1.0 in pyrealm by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/69
• hotfix test_evap.py by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/171
• Let flake8 ignore E203 by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/176
• Add unit tests for splash by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/170
• Draft implementation of new OptimalChi structure by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/172
• Update to the latest versions of checkout and setup-python actions by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/180
• Fixing missing attribute docstrings in core.calendar by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/182
• Profiling of the Splash module by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/181
• New subdaily pmodel implementation by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/183
• Add code to generate SPLASH golden datasets by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/185
• Allowing incomplete days by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/194
• Remove outdated FastSlowPModel by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/199
• Fix time handling in Splash by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/186
• Handle NaNs when calculating max difference in Splash.estimate_initial_soil_moisture by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/193
• Use a function eval_poly for polynomial evaluation by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/187
• Update profiling/report.py and its documentation by @tztsai in https://github.com/ImperialCollegeLondon/pyrealm/pull/188
• Setup trusted publishing by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/200
• Fix for RTD build environment by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/204
• Remove support for Python 3.9 by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/202

New Contributors

• @MarionBWeinzierl made their first contribution in https://github.com/ImperialCollegeLondon/pyrealm/pull/86
• @a-smith-github made their first contribution in https://github.com/ImperialCollegeLondon/pyrealm/pull/85
• @tztsai made their first contribution in https://github.com/ImperialCollegeLondon/pyrealm/pull/146
• @surbhigoel77 made their first contribution in https://github.com/ImperialCollegeLondon/pyrealm/pull/147

Full Changelog: https://github.com/ImperialCollegeLondon/pyrealm/compare/0.10.1...v1.0.0a3-test

Biosphere - Plants and Vegetation - Python
Published by davidorme about 1 year ago

pyrealm - v0.10.1

The pyrealm package

Version: 0.10.1
See: https://pypi.org/project/pyrealm/0.10.1/#files

What's Changed

• Merge 0.10.0 release branch back into develop by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/74
• Handling np.nan in pyrealm.pmodel.subdaily.memory_effect by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/78
• Release 0.10.1 by @davidorme in https://github.com/ImperialCollegeLondon/pyrealm/pull/79

Full Changelog: https://github.com/ImperialCollegeLondon/pyrealm/compare/0.10.0...0.10.1

Biosphere - Plants and Vegetation - Python
Published by davidorme over 1 year ago