Pastas - Release of Pastas 1.9

What's Changed

• Add ruff commands to development section of docs by @OnnoEbbens in https://github.com/pastas/pastas/pull/878
• Do not compute RMSN when no noise model is present in the model by @nicolesullivam in https://github.com/pastas/pastas/pull/876
• Adding more colors by default and also the option to specify colors for plots.series() by @GovertAlkemade in https://github.com/pastas/pastas/pull/875
• update notebook 8 by @rubencalje in https://github.com/pastas/pastas/pull/880
• Add PICP to metrics by @raoulcollenteur in https://github.com/pastas/pastas/pull/879
• matplotlib kwargs to pastas.plots.series by @mbakker7 in https://github.com/pastas/pastas/pull/886
• 894 update unit tests fixtures by @martinvonk in https://github.com/pastas/pastas/pull/895
• Add PICP to all by @raoulcollenteur in https://github.com/pastas/pastas/pull/898
• Add stderr to results plots in Bokeh and Plotly by @raoulcollenteur in https://github.com/pastas/pastas/pull/901
• Fix bug where interactive Bokeh plots did not work without noise model. by @raoulcollenteur in https://github.com/pastas/pastas/pull/900
• allow errors in signatures.summary by @raoulcollenteur in https://github.com/pastas/pastas/pull/904
• Update issue templates (part 1) by @martinvonk in https://github.com/pastas/pastas/pull/907
• Update issue templates (part 2) by @martinvonk in https://github.com/pastas/pastas/pull/913
• Add normalized Nash-Sutcliffe Efficiency by @martinvonk in https://github.com/pastas/pastas/pull/911
• Improve the CCF/ACF function and make it more robust by using gaussian kernels by default by @raoulcollenteur in https://github.com/pastas/pastas/pull/896
• Update EmceeSolver class and Likelihood functions by @mbakker7 in https://github.com/pastas/pastas/pull/903
• Correct description of low_pulse_count signature by @raoulcollenteur in https://github.com/pastas/pastas/pull/920
• CCF improvements by @dbrakenhoff in https://github.com/pastas/pastas/pull/918
• add warning for response > warmup to fit_report by @dbrakenhoff in https://github.com/pastas/pastas/pull/924
• avoid empty column in ml.plotly.results() if stderr=False by @dbrakenhoff in https://github.com/pastas/pastas/pull/923
• #868 add tmin tmax to CompareModels.plot by @AnneDeGraaf in https://github.com/pastas/pastas/pull/910
• Fix Potential File Descriptor Leaks by @raoulcollenteur in https://github.com/pastas/pastas/pull/926
• add docstring to ml.stats.diagnostics by @raoulcollenteur in https://github.com/pastas/pastas/pull/927
• Update Master branch to Pastas version 1.9.0 by @raoulcollenteur in https://github.com/pastas/pastas/pull/919

New Contributors

• @nicolesullivam made their first contribution in https://github.com/pastas/pastas/pull/876
• @GovertAlkemade made their first contribution in https://github.com/pastas/pastas/pull/875
• @AnneDeGraaf made their first contribution in https://github.com/pastas/pastas/pull/910

Full Changelog: https://github.com/pastas/pastas/compare/v1.8.1...v1.9.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur about 2 months ago

Pastas - Release of Pastas 1.8.1

What's Changed

Minor release for full Python 3.13 support without Numba release candidate dependency
PR's:

• remove constraints for numba rc and py313 by @martinvonk in https://github.com/pastas/pastas/pull/856
• Set nlags for series shorter than 365 days by @AviadAvr in https://github.com/pastas/pastas/pull/855
• Update master to Pastas v1.8.1 by @martinvonk in https://github.com/pastas/pastas/pull/864

Full Changelog: https://github.com/pastas/pastas/compare/v1.8.0...v1.8.1

Hydrosphere - Freshwater and Hydrology - Python
Published by martinvonk 3 months ago

Pastas - Release of Pastas 1.8.0

What's Changed

• add check for numpy integer and convert to int by @dbrakenhoff in https://github.com/pastas/pastas/pull/823
• Fix #750: fit report errors when hantush function is used by @dbrakenhoff in https://github.com/pastas/pastas/pull/827
• Run uncertainty estimation benchmark notebook with multiprocessing by @martinvonk in https://github.com/pastas/pastas/pull/831
• Add contributions plot with optional stress time series and response by @dbrakenhoff in https://github.com/pastas/pastas/pull/828
• Include gg function in dutch stats init by @bdestombe in https://github.com/pastas/pastas/pull/832
• Load parameter bounds and vary if changed in pas file by @martinvonk in https://github.com/pastas/pastas/pull/833
• Remove capture of warnings in logger by @martinvonk in https://github.com/pastas/pastas/pull/835
• Update the Pastas readthedocs quick example by @martinvonk in https://github.com/pastas/pastas/pull/836
• Add Python 3.13 and drop Python 3.9 support by @martinvonk in https://github.com/pastas/pastas/pull/807
• Add support for the Levenberg-Marquardt method implemented in SciPy least_squares by @martinvonk in https://github.com/pastas/pastas/pull/825
• Fix typos by @mwtoews in https://github.com/pastas/pastas/pull/841
• Add model check functionality by @dbrakenhoff in https://github.com/pastas/pastas/pull/829
• Update documentation links by @raoulcollenteur in https://github.com/pastas/pastas/pull/849
• Update master to Pastas v1.8.0 by @raoulcollenteur in https://github.com/pastas/pastas/pull/848

New Contributors

• @bdestombe made their first contribution in https://github.com/pastas/pastas/pull/832
• @mwtoews made their first contribution in https://github.com/pastas/pastas/pull/841

Full Changelog: https://github.com/pastas/pastas/compare/v1.7.0...v1.8.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur 3 months ago

Pastas - v1.7.0: The Pastas Davos version

What's Changed

• Improve docs for prediction interval and other solver methods by @dbrakenhoff in https://github.com/pastas/pastas/pull/785
• Add latexify to the readthdocs dependencies by @martinvonk in https://github.com/pastas/pastas/pull/786
• Update broken badges in README and date in LICENSE by @martinvonk in https://github.com/pastas/pastas/pull/787
• Setup GitHub Codespaces to run example notebooks in online container by @martinvonk in https://github.com/pastas/pastas/pull/790
• Allow pcov of solver to be null when reading a pas-file. by @martinvonk in https://github.com/pastas/pastas/pull/796
• Fix notebooks with Ruff by @martinvonk in https://github.com/pastas/pastas/pull/799
• Add deprecation logger warning to Edelman response function for deprecation in pastas 2.0 by @martinvonk in https://github.com/pastas/pastas/pull/798
• Fix pastas.stats.dutch docstring by @martinvonk in https://github.com/pastas/pastas/pull/802
• Add brakenhoff 2022 and pastas papers for 2024 by @raoulcollenteur in https://github.com/pastas/pastas/pull/814
• Add flexible PastasDeprecationWarning by @dbrakenhoff in https://github.com/pastas/pastas/pull/801
• Create add_solver method to separate solving and adding the solver to a model by @martinvonk in https://github.com/pastas/pastas/pull/804
• Change .loc to .at where possible by @raoulcollenteur in https://github.com/pastas/pastas/pull/816
• Consistent ruff settings in pyproject.toml by @martinvonk in https://github.com/pastas/pastas/pull/817
• Vary parameter recharge_kv in FlexModel by default by @raoulcollenteur in https://github.com/pastas/pastas/pull/815
• Increase min_obs for acf for irregular time series to 50 by @raoulcollenteur in https://github.com/pastas/pastas/pull/813
• Uncertainty estimation example notebook by @mbakker7 in https://github.com/pastas/pastas/pull/812
• Update master-branch to Pastas v1.7.0 by @raoulcollenteur in https://github.com/pastas/pastas/pull/818

Full Changelog: https://github.com/pastas/pastas/compare/v1.6.0...v1.7.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur 8 months ago

Pastas - Release of Pastas 1.6

What's Changed

• fix link to documentation in pyproj by @OnnoEbbens in https://github.com/pastas/pastas/pull/751
• Seperate model summary plotting and pdf saving by @martinvonk in https://github.com/pastas/pastas/pull/756
• Raise exception if no samples are found within max_iter by @martinvonk in https://github.com/pastas/pastas/pull/757
• Change frequency offset based on Pandas version by @martinvonk in https://github.com/pastas/pastas/pull/754
• Caching load_dataset and adding read_csv_kwargs by @martinvonk in https://github.com/pastas/pastas/pull/752
• Make SGI applicable to DataFrame and add Dropna by @raoulcollenteur in https://github.com/pastas/pastas/pull/760
• Use Ruff as linter and formatter and introduce git pre-commit hook by @martinvonk in https://github.com/pastas/pastas/pull/759
• Adjust xlim to tmin and tmax of models in default modelcompare plot by @martinvonk in https://github.com/pastas/pastas/pull/768
• update pastas show versions function for all new optional dependencies by @martinvonk in https://github.com/pastas/pastas/pull/767
• Update dependencies of pastas 1.6 by @raoulcollenteur in https://github.com/pastas/pastas/pull/769
• Numpy2 fixes by @dbrakenhoff in https://github.com/pastas/pastas/pull/778
• Tracksolve fix for pastas 1.5+ by @dbrakenhoff in https://github.com/pastas/pastas/pull/776
• ACF calculation 'division by zero' bugfix by @AviadAvr in https://github.com/pastas/pastas/pull/774
• Remove logger-initialization in init.py by @rubencalje in https://github.com/pastas/pastas/pull/772
• Update Master branch to 1.6 by @raoulcollenteur in https://github.com/pastas/pastas/pull/762

New Contributors

• @AviadAvr made their first contribution in https://github.com/pastas/pastas/pull/774

Full Changelog: https://github.com/pastas/pastas/compare/v1.5.0...v1.6.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur 10 months ago

Pastas - Release of Pastas 1.5

We are happy to release Pastas 1.5, which includes a major change in the way noisemodels are added to Pastas Models. To read more on why this change is made and how to adapt your script, please refer to https://github.com/pastas/pastas/issues/735.

What's Changed

• Render equations in docs by @dbrakenhoff in https://github.com/pastas/pastas/pull/695
• Add load_dataset method to pastas by @raoulcollenteur in https://github.com/pastas/pastas/pull/693
• Add Kling-Gupta Efficiency and differentiate between modified an unmodified by @martinvonk in https://github.com/pastas/pastas/pull/700
• Python -> Pastas by @OnnoEbbens in https://github.com/pastas/pastas/pull/710
• Fix issue 702 by @rubencalje in https://github.com/pastas/pastas/pull/703
• Fix warning Day.delta is deprecated by @rubencalje in https://github.com/pastas/pastas/pull/713
• add get_correction to NoiseModel by @raoulcollenteur in https://github.com/pastas/pastas/pull/709
• Add bokeh plots and deprecate contributions_pie by @raoulcollenteur in https://github.com/pastas/pastas/pull/715
• Some plotting improvements by @dbrakenhoff in https://github.com/pastas/pastas/pull/717
• Use istress in responses in result-plot by @rubencalje in https://github.com/pastas/pastas/pull/714
• Geometry metadata in pas files by @dbrakenhoff in https://github.com/pastas/pastas/pull/718
• Add "Rise" and "Head" and R2 to plots by @raoulcollenteur in https://github.com/pastas/pastas/pull/723
• Add AICc for bias correction with small sample sizes by @martinvonk in https://github.com/pastas/pastas/pull/727
• Change NoiseModel names by @martinvonk in https://github.com/pastas/pastas/pull/732
• 722 show estimated parameter uncertainties or not by @OnnoEbbens in https://github.com/pastas/pastas/pull/729
• Do not add NoiseModel to Model-class by default anymore by @rubencalje in https://github.com/pastas/pastas/pull/678
• Update docs for 1.5 by @raoulcollenteur in https://github.com/pastas/pastas/pull/734
• Fix #738 by @dbrakenhoff in https://github.com/pastas/pastas/pull/740
• Update logging messages and raising errors by @raoulcollenteur in https://github.com/pastas/pastas/pull/731
• Readme to markdown by @raoulcollenteur in https://github.com/pastas/pastas/pull/743
• Update master branch to Pastas 1.5 by @raoulcollenteur in https://github.com/pastas/pastas/pull/741

Full Changelog: https://github.com/pastas/pastas/compare/v1.4.0...v1.5.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur about 1 year ago

Pastas - Release of Pastas 1.4

What's Changed

• fix for Problem adding LinearTrend #675 by @OnnoEbbens in https://github.com/pastas/pastas/pull/676
• Fix issue #681 by @rubencalje in https://github.com/pastas/pastas/pull/682
• Support Python 3.12 + GitHub workflow update versions by @martinvonk in https://github.com/pastas/pastas/pull/683
• Update groundwater signatures module by @raoulcollenteur in https://github.com/pastas/pastas/pull/636
• Resolve Pandas 2.2 (FutureWarning) issues by @martinvonk in https://github.com/pastas/pastas/pull/684
• Update master to Pastas 1.4 by @raoulcollenteur in https://github.com/pastas/pastas/pull/686

Full Changelog: https://github.com/pastas/pastas/compare/v1.3.0...v1.4.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur about 1 year ago

Pastas - Release of Pastas 1.4

What's Changed

• fix for Problem adding LinearTrend #675 by @OnnoEbbens in https://github.com/pastas/pastas/pull/676
• Fix issue #681 by @rubencalje in https://github.com/pastas/pastas/pull/682
• Support Python 3.12 + GitHub workflow update versions by @martinvonk in https://github.com/pastas/pastas/pull/683
• Update groundwater signatures module by @raoulcollenteur in https://github.com/pastas/pastas/pull/636
• Resolve Pandas 2.2 (FutureWarning) issues by @martinvonk in https://github.com/pastas/pastas/pull/684
• Update master to Pastas 1.4 by @raoulcollenteur in https://github.com/pastas/pastas/pull/686

Full Changelog: https://github.com/pastas/pastas/compare/v1.3.0...v1.4.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur about 1 year ago

Pastas - Release of Pastas 1.3

What's Changed

• Apply more general use of ImportError everywhere by @raoulcollenteur in https://github.com/pastas/pastas/pull/626
• Change ml.fit to ml.solver in model class by @raoulcollenteur in https://github.com/pastas/pastas/pull/628
• Fix issue #609 by @raoulcollenteur in https://github.com/pastas/pastas/pull/630
• 642 developmentmodify code for stressmodels without an rfunc by @dbrakenhoff in https://github.com/pastas/pastas/pull/643
• Improve time series settings documentation by @dbrakenhoff in https://github.com/pastas/pastas/pull/639
• Add Experimental Python 3.12 Testing by @martinvonk in https://github.com/pastas/pastas/pull/651
• fix for #654 by @OnnoEbbens in https://github.com/pastas/pastas/pull/655
• Improve ml.plots.stack_results() by @dbrakenhoff in https://github.com/pastas/pastas/pull/656
• Update README.rst to fix Codacy links by @raoulcollenteur in https://github.com/pastas/pastas/pull/662
• Improve CompareModels plot by @dbrakenhoff in https://github.com/pastas/pastas/pull/663
• add 'norm' attribute to NoiseModelBase by @raoulcollenteur in https://github.com/pastas/pastas/pull/661
• Raise warning if kwargs parsed to solver instance by @martinvonk in https://github.com/pastas/pastas/pull/646
• Implement freq_obs for sampling observations prior to optimization by @dbrakenhoff in https://github.com/pastas/pastas/pull/649
• Add Plotly plots and extension registration by @dbrakenhoff in https://github.com/pastas/pastas/pull/641
• Make replace=True for Model.add_stressmodel by @raoulcollenteur in https://github.com/pastas/pastas/pull/666
• better error message when a class instead of an instance is provided for the rfunc by @raoulcollenteur in https://github.com/pastas/pastas/pull/665
• Add "good first issue" to contributing docs by @raoulcollenteur in https://github.com/pastas/pastas/pull/632
• Add description on normalizing surface water levels by @martinvonk in https://github.com/pastas/pastas/pull/668
• Add pairplot method to visualize correlation between time series by @martinvonk in https://github.com/pastas/pastas/pull/652
• Add map with Pastas models to docs by @raoulcollenteur in https://github.com/pastas/pastas/pull/637
• Update Master branch to Pastas 1.3.0 by @raoulcollenteur in https://github.com/pastas/pastas/pull/664

Full Changelog: https://github.com/pastas/pastas/compare/v1.2.0...v1.3.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur over 1 year ago

Pastas - Release of Pastas 1.2.0

What's Changed

• Merge master into dev by @martinvonk in https://github.com/pastas/pastas/pull/600
• remove NumPy < v1.24 requirement by @martinvonk in https://github.com/pastas/pastas/pull/607
• 602 wellmodel fixes 2,3 by @dbrakenhoff in https://github.com/pastas/pastas/pull/603
• address #537 by @dbrakenhoff in https://github.com/pastas/pastas/pull/599
• update color of noise in CompareModels by @martinvonk in https://github.com/pastas/pastas/pull/613
• Add MCMC solver to Pastas by @raoulcollenteur in https://github.com/pastas/pastas/pull/572
• Fix issue #536 return true if series are valid, else raise error by @raoulcollenteur in https://github.com/pastas/pastas/pull/616
• silence HantushWellModel info msg about r=1.0 by @dbrakenhoff in https://github.com/pastas/pastas/pull/604
• Fix issue 608 by @raoulcollenteur in https://github.com/pastas/pastas/pull/615
• Check if precipitation is probably in mm/d by @raoulcollenteur in https://github.com/pastas/pastas/pull/618
• Update Master to Pastas 1.2 by @raoulcollenteur in https://github.com/pastas/pastas/pull/619

Full Changelog: https://github.com/pastas/pastas/compare/v1.1.0...v1.2.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur over 1 year ago

Pastas - Release of Pastas 1.1.0

What's Changed

• Fix datetime axes with pandas.Timestamp and some other improvements by @dbrakenhoff in https://github.com/pastas/pastas/pull/557
• Make table in pastas.plots.series() optional by @martinvonk in https://github.com/pastas/pastas/pull/561
• Update types.py to support Matplotlib <v3.4 by @martinvonk in https://github.com/pastas/pastas/pull/553
• Improve documentation by @martinvonk in https://github.com/pastas/pastas/pull/560
• Fix issue #564 by @rubencalje in https://github.com/pastas/pastas/pull/565
• Improve modeling with non-daily timesteps by @dbrakenhoff in https://github.com/pastas/pastas/pull/556
• Codacy coverage upload, auto-assign pr and flake8 update by @martinvonk in https://github.com/pastas/pastas/pull/566
• add fill/bfill timeseries settings options by @dbrakenhoff in https://github.com/pastas/pastas/pull/558
• Add (Pandas) resample wrapper function to timeseries_utils by @martinvonk in https://github.com/pastas/pastas/pull/581
• Pas datetime fixes for pastastore by @dbrakenhoff in https://github.com/pastas/pastas/pull/582
• Update testing routine with fixtures and benchmark notebooks test by @martinvonk in https://github.com/pastas/pastas/pull/583
• fix #571 warnings tracksolve by @dbrakenhoff in https://github.com/pastas/pastas/pull/579
• Support Python 3.11 by @martinvonk in https://github.com/pastas/pastas/pull/588
• fix #549 stderr formatting by @dbrakenhoff in https://github.com/pastas/pastas/pull/580
• fix #575 duplicate columns in plots.compare() by @dbrakenhoff in https://github.com/pastas/pastas/pull/576
• improve WellModel by @dbrakenhoff in https://github.com/pastas/pastas/pull/570
• fix #551: up and gain_scale_factor are set by StressModel by @dbrakenhoff in https://github.com/pastas/pastas/pull/573
• add fix to wellmodel by @dbrakenhoff in https://github.com/pastas/pastas/pull/589
• fix #577 improve validate_series by @dbrakenhoff in https://github.com/pastas/pastas/pull/578
• Merge main into dev by @dbrakenhoff in https://github.com/pastas/pastas/pull/596
• review release changes by @dbrakenhoff in https://github.com/pastas/pastas/pull/597
• Update master to Pastas 1.1.0 by @raoulcollenteur in https://github.com/pastas/pastas/pull/595

Full Changelog: https://github.com/pastas/pastas/compare/v1.0.1...v1.1.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur almost 2 years ago

Pastas - Release of Pastas v1.0.1: Arrabbiata

What's Changed

• Fix small typo in modelplots.py by @martinvonk in https://github.com/pastas/pastas/pull/532
• Delete timeseries_legacy.py by @raoulcollenteur in https://github.com/pastas/pastas/pull/531
• Update dev to 1.0.1 by @raoulcollenteur in https://github.com/pastas/pastas/pull/534
• Update master-branch to 1.0.1 by @raoulcollenteur in https://github.com/pastas/pastas/pull/535

Full Changelog: https://github.com/pastas/pastas/compare/v1.0.0...v1.0.1

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur about 2 years ago

Pastas - Release of Pastas v1.0.0: Arrabiata

What's Changed

• Implement Type Hints by @martinvonk in https://github.com/pastas/pastas/pull/441
• 448 black formatting by @dbrakenhoff in https://github.com/pastas/pastas/pull/457
• 454 Add .gitattribute file for linguist settings by @martinvonk in https://github.com/pastas/pastas/pull/456
• Transition to pyproject.toml by @martinvonk in https://github.com/pastas/pastas/pull/443
• 442 fix python-publish.yml and improve version.py by @martinvonk in https://github.com/pastas/pastas/pull/461
• Fix runtime error in ChangeModel by @raoulcollenteur in https://github.com/pastas/pastas/pull/464
• Have acf return conf instead of stderr by @raoulcollenteur in https://github.com/pastas/pastas/pull/465
• 455 only allow pandas series as user input by @raoulcollenteur in https://github.com/pastas/pastas/pull/459
• Require user-provided response function to be instances by @raoulcollenteur in https://github.com/pastas/pastas/pull/466
• 452 Change Numba from optional to full dependency by @martinvonk in https://github.com/pastas/pastas/pull/468
• Raise deprecation warnings for all read methods by @raoulcollenteur in https://github.com/pastas/pastas/pull/470
• remove dump menyanthes method by @raoulcollenteur in https://github.com/pastas/pastas/pull/471
• fix #473 by @dbrakenhoff in https://github.com/pastas/pastas/pull/474
• Add impulse response functions to all rfunc by @raoulcollenteur in https://github.com/pastas/pastas/pull/472
• 460 enhancement streamline time series pre processing utilities by @dbrakenhoff in https://github.com/pastas/pastas/pull/467
• change meanstress to gain_scale_factor by @raoulcollenteur in https://github.com/pastas/pastas/pull/483
• Update development.md by @martinvonk in https://github.com/pastas/pastas/pull/489
• Move configuration files to pyproject.toml and delete setup.cfg by @martinvonk in https://github.com/pastas/pastas/pull/490
• Properly store recharge models and settings by @raoulcollenteur in https://github.com/pastas/pastas/pull/493
• Update response arguments by @raoulcollenteur in https://github.com/pastas/pastas/pull/491
• Fix to_dict methods for stressmodels by @raoulcollenteur in https://github.com/pastas/pastas/pull/497
• Stop storing stresses as list if not necessary by @raoulcollenteur in https://github.com/pastas/pastas/pull/498
• Remove scipy 1.8 check by @raoulcollenteur in https://github.com/pastas/pastas/pull/496
• make "class" keyword consistent in to_dict methods by @raoulcollenteur in https://github.com/pastas/pastas/pull/499
• Solver as instance instead of classes by @raoulcollenteur in https://github.com/pastas/pastas/pull/487
• remove menyanthes dump method by @raoulcollenteur in https://github.com/pastas/pastas/pull/501
• remove read module by @raoulcollenteur in https://github.com/pastas/pastas/pull/494
• remove deprecated time series and pas-files code by @raoulcollenteur in https://github.com/pastas/pastas/pull/503
• remove deprecations from stressmodels and rfunc by @raoulcollenteur in https://github.com/pastas/pastas/pull/504
• remove old model code by @raoulcollenteur in https://github.com/pastas/pastas/pull/506
• Dynamic versioning by @martinvonk in https://github.com/pastas/pastas/pull/507
• Add PyPI downloads badge to readme.rst by @martinvonk in https://github.com/pastas/pastas/pull/512
• Fix bug #510 by @raoulcollenteur in https://github.com/pastas/pastas/pull/520
• Improve testing routine and GitHub CI by @dbrakenhoff in https://github.com/pastas/pastas/pull/515
• Update metrics.py by @raoulcollenteur in https://github.com/pastas/pastas/pull/521
• fix docstrings and unused code in acf by @raoulcollenteur in https://github.com/pastas/pastas/pull/524
• 522 fix some bugs in time series and make more efficient by @raoulcollenteur in https://github.com/pastas/pastas/pull/523
• add error when simulating NaNs (#348) by @dbrakenhoff in https://github.com/pastas/pastas/pull/526
• Pastas docs 1.0 by @raoulcollenteur in https://github.com/pastas/pastas/pull/502
• Update master-branch to Pastas 1.0: Arrabiata by @raoulcollenteur in https://github.com/pastas/pastas/pull/529

Full Changelog: https://github.com/pastas/pastas/compare/v0.23.1...v1.0.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur about 2 years ago

Pastas - Release of Pastas v0.23.1

What's Changed

• Bugfix release v0.23.1 by @dbrakenhoff in https://github.com/pastas/pastas/pull/517

Full Changelog: https://github.com/pastas/pastas/compare/v0.23.0...v0.23.1

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur about 2 years ago

Pastas - Release of Pastas v0.23.0

What's Changed

• Update master to Pastas 0.23.0, last release before 1.0. by @raoulcollenteur in https://github.com/pastas/pastas/pull/477

Full Changelog: https://github.com/pastas/pastas/compare/v0.22.0...v0.23.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur about 2 years ago

Pastas - Release of Pastas v0.22.0

What's Changed

• 404 development export all time series from pastas model [closes #404] by @raoulcollenteur in https://github.com/pastas/pastas/pull/405
• calculate all fit metrics with pastas.stats.metrics and fix pytest issues by @martinvonk in https://github.com/pastas/pastas/pull/410
• 383 enhancement add heteroscedasticity plot to plotsdiagnostics by @raoulcollenteur in https://github.com/pastas/pastas/pull/409
• Remove StressModel2 by @raoulcollenteur in https://github.com/pastas/pastas/pull/406
• 412 enhancement stop checking for to daily unit in load model by @raoulcollenteur in https://github.com/pastas/pastas/pull/413
• Deal with Pandas 1.4 Deprecations by @martinvonk in https://github.com/pastas/pastas/pull/416
• 407 enhancement deprecation warnings for pastasread methods by @OnnoEbbens in https://github.com/pastas/pastas/pull/417
• 304 enhancement check data types in load model method by @martinvonk in https://github.com/pastas/pastas/pull/415
• [ENHANCEMENT] Add output options for GXG calculations by @dbrakenhoff in https://github.com/pastas/pastas/pull/357
• 403 enhancement add r as kwarg to variance gain method in wellmodel by @dbrakenhoff in https://github.com/pastas/pastas/pull/418
• Make rfunc an instance by @rubencalje in https://github.com/pastas/pastas/pull/361
• Make notebooks run automatically by @rubencalje in https://github.com/pastas/pastas/pull/425
• Add citation file by @dbrakenhoff in https://github.com/pastas/pastas/pull/426
• Improve readme by @OnnoEbbens in https://github.com/pastas/pastas/pull/422
• 428 models compare by @dbrakenhoff in https://github.com/pastas/pastas/pull/429
• Add publications and references list by @raoulcollenteur in https://github.com/pastas/pastas/pull/436
• Add empty StressModel2 that raises warning [closes #363] by @raoulcollenteur in https://github.com/pastas/pastas/pull/420
• create Linear instance after instantiation by @raoulcollenteur in https://github.com/pastas/pastas/pull/445
• 430 enhancement speed up hantushstep by @dbrakenhoff in https://github.com/pastas/pastas/pull/433
• Update master-branch to Pastas v0.22.0 by @raoulcollenteur in https://github.com/pastas/pastas/pull/446

Full Changelog: https://github.com/pastas/pastas/compare/v0.21.0...v0.22.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur over 2 years ago

Pastas - Release of Pastas v0.21.0

What's Changed

• address #392 by @dbrakenhoff in https://github.com/pastas/pastas/pull/393
• Add optional dependencies to setup.py by @martinvonk in https://github.com/pastas/pastas/pull/390
• Add SolveTimer() by @dbrakenhoff in https://github.com/pastas/pastas/pull/400
• Update master to v0.21.0 by @raoulcollenteur in https://github.com/pastas/pastas/pull/401

Full Changelog: https://github.com/pastas/pastas/compare/v0.20.0...v0.21.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur over 2 years ago

Pastas - Release of Pastas v0.20.0

What's Changed

• Add Groundwater Signatures Module by @raoulcollenteur in https://github.com/pastas/pastas/pull/372
• Summary pdf by @raoulcollenteur in https://github.com/pastas/pastas/pull/378
• Improve fit report by @dbrakenhoff in https://github.com/pastas/pastas/pull/381
• fix #380, modification for #177 by @dbrakenhoff in https://github.com/pastas/pastas/pull/382
• Recharge Model Features - Peterson & Western / Flex (Groundwater Uptake) by @martinvonk in https://github.com/pastas/pastas/pull/373
• Update Master-branch to v0.20.0 by @raoulcollenteur in https://github.com/pastas/pastas/pull/385

Full Changelog: https://github.com/pastas/pastas/compare/v0.19.0...v0.20.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur about 3 years ago

Pastas - Release of Pastas v0.19.0

What's Changed

• get_response add_0=True correct index by @martinvonk in https://github.com/pastas/pastas/pull/325
• Kraijenhoff van de Leur Response by @martinvonk in https://github.com/pastas/pastas/pull/326
• docformatter, autopep8 and sort imports by @dbrakenhoff in https://github.com/pastas/pastas/pull/328
• Histogram in plots.series() by @martinvonk in https://github.com/pastas/pastas/pull/330
• Add ChangeModel to dev by @raoulcollenteur in https://github.com/pastas/pastas/pull/332
• Add Spline response function by @rubencalje in https://github.com/pastas/pastas/pull/333
• pastas.plots.series() changes by @martinvonk in https://github.com/pastas/pastas/pull/334
• allow kwargs for rsq by @martinvonk in https://github.com/pastas/pastas/pull/341
• Kraijenhoff van de Leur / Bruggeman 133.15 Response by @martinvonk in https://github.com/pastas/pastas/pull/335
• Add get_equidistant_timeseries() method by @dbrakenhoff in https://github.com/pastas/pastas/pull/338
• Improve Flexmodel and add a snow model by @raoulcollenteur in https://github.com/pastas/pastas/pull/343
• Fix #353, precision of floats in JSON files by @dbrakenhoff in https://github.com/pastas/pastas/pull/354
• Save and read options of FlexModel to/from pas-file by @rubencalje in https://github.com/pastas/pastas/pull/359
• Update master to v0.19.0 by @raoulcollenteur in https://github.com/pastas/pastas/pull/362

Full Changelog: https://github.com/pastas/pastas/compare/v0.18.0...v0.19.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur over 3 years ago

Pastas - Release of Pastas v0.18.0

What's Changed

• Improved description RMSE formula by @martinvonk in https://github.com/pastas/pastas/pull/307
• fix HantushWellModel by @dbrakenhoff in https://github.com/pastas/pastas/pull/313
• Warning when optimization hits parameter bounds by @dbrakenhoff in https://github.com/pastas/pastas/pull/312
• freq argument added to Model init. by @raoulcollenteur in https://github.com/pastas/pastas/pull/315
• Update Master to Pastas v0.18.0 by @raoulcollenteur in https://github.com/pastas/pastas/pull/316

Full Changelog: https://github.com/pastas/pastas/compare/v0.17.1...v0.18.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur over 3 years ago

Pastas - Release of Pastas version 0.17.1

Intermediate release that fixes some bugs.

What's Changed

• Dev by @raoulcollenteur in https://github.com/pastas/pastas/pull/301

Full Changelog: https://github.com/pastas/pastas/compare/v0.17.0...v0.17.1

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur almost 4 years ago

Pastas - Release of Pastas version 0.17.0

See the Docs (https://pastas.readthedocs.io/en/latest/) for the release notes.

What's Changed

• fix aic/bic calculation by @dbrakenhoff in https://github.com/pastas/pastas/pull/263
• Create python-package.yml to start move to Github Actions for CI by @raoulcollenteur in https://github.com/pastas/pastas/pull/281
• Move testing to Github Actions by @dbrakenhoff in https://github.com/pastas/pastas/pull/287
• Hantush by @dbrakenhoff in https://github.com/pastas/pastas/pull/286
• Update Master-branch to v0.17.0 by @raoulcollenteur in https://github.com/pastas/pastas/pull/292

Full Changelog: https://github.com/pastas/pastas/compare/v0.16.0...v0.17.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur about 4 years ago

Pastas - Release of Pastas version 0.16.0

What's Changed

• Improve time_offset by @rubencalje in https://github.com/pastas/pastas/pull/237
• add examples to notebook18 about step trends by @OnnoEbbens in https://github.com/pastas/pastas/pull/242
• Fix ml.get_stress() for WellModel by @dbrakenhoff in https://github.com/pastas/pastas/pull/246
• Update markdown cell to improve documentation by @OnnoEbbens in https://github.com/pastas/pastas/pull/254
• Create python-publish.yml by @raoulcollenteur in https://github.com/pastas/pastas/pull/256
• Upgrade Master branch to Pastas v0.16.0 by @raoulcollenteur in https://github.com/pastas/pastas/pull/255

Full Changelog: https://github.com/pastas/pastas/compare/v0.15.0...v0.16.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur over 4 years ago

Pastas - Release of Pastas version 0.15.0

New release. Release notes are moved to the ReadTheDocs website: https://pastas.readthedocs.io/en/latest/release_notes.html

What's Changed

• Make default rfunc in StressModelBase None #186 by @raoulcollenteur in https://github.com/pastas/pastas/pull/191
• Introduce ArmaModel to Pastas by @raoulcollenteur in https://github.com/pastas/pastas/pull/198
• CONTRIBUTING.md: point to the current dev site by @dcslagel in https://github.com/pastas/pastas/pull/208
• Update issue templates by @raoulcollenteur in https://github.com/pastas/pastas/pull/214
• fix name of series in TimeSeries and name of HantushOld rfunc by @OnnoEbbens in https://github.com/pastas/pastas/pull/220
• Add Portmanteau test by @EitvanderMeulen in https://github.com/pastas/pastas/pull/218
• Update Wellmodel and HantushWellModel by @dbrakenhoff in https://github.com/pastas/pastas/pull/222
• Diagnostics by @raoulcollenteur in https://github.com/pastas/pastas/pull/223
• Dinoloket read method by @tomvansteijn in https://github.com/pastas/pastas/pull/227
• Update master branch to v0.15.0 by @raoulcollenteur in https://github.com/pastas/pastas/pull/229

New Contributors

• @dcslagel made their first contribution in https://github.com/pastas/pastas/pull/208
• @EitvanderMeulen made their first contribution in https://github.com/pastas/pastas/pull/218

Full Changelog: https://github.com/pastas/pastas/compare/v0.14.0...v0.15.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur over 4 years ago

Pastas - Release of Pastas version 0.14.0

Pastas v0.14.0 has just been released. This version should be mostly backward compatible. This version contains many new features and improvements to the documentation.

What's Changed

• Update stressmodel.py by @pgraafstra in https://github.com/pastas/pastas/pull/170
• Create CODE_OF_CONDUCT.md by @raoulcollenteur in https://github.com/pastas/pastas/pull/178
• Improved documentation website by @raoulcollenteur in https://github.com/pastas/pastas/pull/179
• Add model comparison plot, deprecation warning Project by @dbrakenhoff in https://github.com/pastas/pastas/pull/181
• Recharge by @raoulcollenteur in https://github.com/pastas/pastas/pull/173
• Add emcee notebook and update parameter bounds by @raoulcollenteur in https://github.com/pastas/pastas/pull/172
• Tarso by @rubencalje in https://github.com/pastas/pastas/pull/182
• Upgrade master to v0.14.0 by @raoulcollenteur in https://github.com/pastas/pastas/pull/188

New Contributors

• @pgraafstra made their first contribution in https://github.com/pastas/pastas/pull/170

Full Changelog: https://github.com/pastas/pastas/compare/v0.13.0...v0.14.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur about 5 years ago

Pastas - Release of Pastas version 0.13.0

Pastas version 0.13.0 has just been released. This version includes large improvement to the solver methods, including a start on an uncertainty quantification framework within Pastas.

This release should be mostly backward compatible.

What's Changed

• add stacked_results plot by @dbrakenhoff in https://github.com/pastas/pastas/pull/150
• Improve messaging by @dbrakenhoff in https://github.com/pastas/pastas/pull/155
• Add maxtmax argument by @rubencalje in https://github.com/pastas/pastas/pull/159
• add check if noise_alpha is smaller than model freq by @dbrakenhoff in https://github.com/pastas/pastas/pull/164
• Uncertainty by @raoulcollenteur in https://github.com/pastas/pastas/pull/161
• Update master to v0.13.0 by @raoulcollenteur in https://github.com/pastas/pastas/pull/168

Full Changelog: https://github.com/pastas/pastas/compare/v0.12.0...v0.13.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur over 5 years ago

Pastas - Release of Pastas version 0.12.0

A new version of Pastas is released, 0.12.0. This version includes many improvements to the code, bug fixes, new features. The testing of the code was improved significantly (now on Codacy) to ensure proper functioning of the program.

What's Changed

• Pull groundwater paper update from master by @raoulcollenteur in https://github.com/pastas/pastas/pull/123
• Branch onno by @OnnoEbbens in https://github.com/pastas/pastas/pull/127
• Pull some changes from master on readme.rst by @raoulcollenteur in https://github.com/pastas/pastas/pull/128
• Add WellModel by @dbrakenhoff in https://github.com/pastas/pastas/pull/129
• change default parameters for steptrend by @OnnoEbbens in https://github.com/pastas/pastas/pull/130
• Solver by @raoulcollenteur in https://github.com/pastas/pastas/pull/138
• Use loc instead of at for adding metadata to the oseries dataframe by @OnnoEbbens in https://github.com/pastas/pastas/pull/139
• improve solve_models() with tmin/tmax options by @dbrakenhoff in https://github.com/pastas/pastas/pull/144
• improve project methods by @dbrakenhoff in https://github.com/pastas/pastas/pull/146
• Add tests for pastas.Project by @dbrakenhoff in https://github.com/pastas/pastas/pull/147
• Update Master to 0.12.0 by @raoulcollenteur in https://github.com/pastas/pastas/pull/148

Full Changelog: https://github.com/pastas/pastas/compare/v0.11.0...v0.12.0

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur over 5 years ago

Pastas - Release of Pastas version 0.11.0

For this release we focused on fixing bugs and adding tests to the code to improve code quality. This version of Pastas should be mostly compatible with the previous versions of Pastas.

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur almost 6 years ago

Pastas - Release of Pastas 0.9.7

Release with many new features and a few deprecations. Should be mostly backward compatible but will throw a few warnings for deprecated features.

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur about 6 years ago

Pastas - Release of Pastas version 0.10.0

This release adds a couple of new features to pastas, along which a new stressmodel to simulate groundwater recharge (Still work in process) and two new response functions. The example notebooks have been updated and a couple of new ones added.

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur about 6 years ago

Pastas - Release of Pastas version 0.9.9

Mostly a bug fix release, with many minor bugs fixed. This version should be mostly backward compatible.

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur about 6 years ago

Pastas - Release of Pastas version 0.9.8

Pastas version 0.9.8 has been released. This version should be mostly backward compatible with 0.9.7. The focus of this version was on bug fixes and clean up of the model code.

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur about 6 years ago

Pastas - Release of Pastas v0.9.6

Pastas version 0.9.6 has been released! This version includes a large number of bug fixes as well as multiple new cool features. This version should be backward compatible with 0.9.5

Highlights

• Solving with different frequencies is now fully supported throughout Pastas.
• A linear trend and a step trend stressmodel have been added.
• Internals for dealing with indices has been optimized.
• New example notebook on dealing with surface water levels.

Other changes

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur almost 7 years ago

Pastas - Release of Pastas v0.9.5

Pastas v0.9.5 has been released. This version should be mostly backward compatible with version 0.9.4 but might give different answers due to a change in the default solver. The kind keyword in all method is deprecated, see other changes below.

Highlights

• It is now possible to fit the constant not as parameter, but after simulation by using the fit_constant argument in the solve method.
• We now use Scipy's Least_squares solver as the default solver, dropping dependency on LmFit (which is still supported and available).
• You can now solve a model without a noisemodel, and use the optimal parameters as initial values when solving with a noisemodel afterwards.

Other Changes

Next Release
In the next release new stressmodels will be introduced that add linear or step trends.

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur about 7 years ago

Pastas - Release of Pastas v0.9.4

Version v0.9.4 of Pastas is released, with multiple bug fixes and further improvements. This version should be compatible with v0.9.3 without many changes to your scripts.

Highlights:

• Improved fit report after model optimilisation
• Improved plotting methods
• New plotting method to plot the stresses
• Scipy LeastSquares solver now fully supported
• Improved parameter bounds
• Support to import Waterbase waterlevel measurements (RWS)
• Automatic including a Constant and Noisemodel in Models
• Improved support of the pas-file format to save models and projects
• Introduced the runs test to check for autocorrelation

Next Release
For the next release we aim to improve the API, making it more stable and simpler to understand for new users. This includes new examples, test procedures and better documentation. This release is planned for the beginning of March 2018.

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur over 7 years ago

Pastas - Release of Pastas v0.9.3

The version 0.9.3 of PASTAS is released.

NOTE! V0.9.3 is NOT backward compatible with v0.9.2. There are some important API changes, most notably in the naming of the Tseries module, changed to stressmodels to avoid confusion in naming. These names are now fixed to avoid future api-incompatibilities. We are steadily working towards a stable version of pastas with much better backward compatibility.

Highlights:

• Renamed Tseries to Stressmodels
• Noisemodel is automatically added
• introduction of TimeSeries object to handle user provided time series and conversions
• import methods have been refactored to read_knmi, read_dino etc. available from the pastas top-level
• tmin/tmax of solve is used when calculating statistics
• statistics module has been updated. Methods used for a single series are now called as e.g: ps.stats.acf(series)
• significant speed-improvements have been applied, speeding up simulation up to a factor 2
• Pastas Project package is added, allowing dealing with many models efficiently

Next release:
For the next release the focus will be on the statistics package and the project packages, along with some new import methods for other data types. This update will most likely be in late 2018.

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur over 7 years ago

Pastas - Release v0.9.2

The version 0.9.2 of PASTAS is released.

Many bugs have been fixed, but mostly internal changes and optimizations.

NOTE! V0.9.2 is NOT backward compatible with v0.9.2. Especially, when solving a model the weights have to be explicitly chosen ("swsi" is recommended setting when using a noise model)

Highlights:

• Plotting module has seen significant updates and speedups
• Indexing for Pandas objects have been updates greatly reducing computation times
• Better support to check stresses (major updated on this expected in v0.9.3)
• New statistics have been added
• Weighting and calculations of the innovations have been split, allowing new weights models to be tested and increasing the modular design.
• Scipy LeastSquares optimizer has been added
• new standard import method is: "import pastas as ps"
• various get methods have been added to the Model class to obtain stresses, contributions etcetera from the tseries objects.

New documentation:

• The documentation page has been completely updated.
• It is now hosted on ReadTheDocs: Please refer to: http://pastas.readthedocs.io/
• Updates in the software are directly added to the documentation pages
• Notebooks with examples can be added easily and will be converted automatically

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur almost 8 years ago

Pastas - Release of Pastas v0.9.1

We just released a new version of Pastas: 0.9.1.

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur about 8 years ago

Pastas - Initial release of Pastas!

This is the first official Beta release of Pastas, version 0.9. The API might slightly change over time but it is intended to keep these changes to a minimum.

Hydrosphere - Freshwater and Hydrology - Python
Published by raoulcollenteur over 8 years ago