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Open Sustainable Technology

TaxonWorks

An integrated web-based workbench for taxonomists and biodiversity scientists.
https://github.com/SpeciesFileGroup/taxonworks

Category: Biosphere
Sub Category: Biodiversity Data Access and Management

Keywords

biodiversity biodiversity-informatics collections describe evolution life nomenclature ruby species taxonomy

Keywords from Contributors

install taxonworks capistrano bioinformatics docs help annotator images open-science informatics

Last synced: 4 days ago
JSON representation

Repository metadata

Workbench for biodiversity informatics.

README.md

TaxonWorks

build
Coverage Status
Chat on Matrix
Link to documentation

Overview

TaxonWorks is a web-based workbench designed for taxonomists and biodiversity scientists. It provides tools to help you capture, organize, and enhance your data, collaborate with others, and prepare your work for analysis and publication. With TaxonWorks, you can easily manage your research data, share it with colleagues, and streamline the process of analyzing and publishing your findings.

To get more information on the project, its vision, and scope see taxonworks.org and docs.taxonworks.org.

License

TaxonWorks is open source and is presently available under the MIT Open Source License.

Funding

The foundation of TaxonWorks is funded by an endowment of the Species File Group. This project was funded in part by NSF-ABI-1356381. Any opinions, findings and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.

Owner metadata

GitHub Events

Total
Last Year

Committers metadata

Last synced: about 14 hours ago

Total Commits: 28,355
Total Committers: 38
Avg Commits per committer: 746.184
Development Distribution Score (DDS): 0.707

Commits in past year: 2,341
Committers in past year: 8
Avg Commits per committer in past year: 292.625
Development Distribution Score (DDS) in past year: 0.428

Name Email Commits
mjy d****d@g****m 8318
José Luis Pereira p****i@o****m 8144
Jim Tucker t****d@u****u 2700
Tom Klein t****e@g****m 2346
Hernán Lucas Pereira e****r@g****m 2033
jrflood j****d@i****u 1465
Dmitry Dmitriev a****a@g****m 1457
mbeckman m****n@i****u 777
eef e****f@i****u 302
Dash Peters 3****w 254
Fauzi Kliman f****n@g****m 225
Geoff Ower g****r@i****u 103
Dmitry Mozzherin d****n@g****m 88
dependabot[bot] 4****] 30
Debbie Paul d****l@i****u 17
eef e****u 15
Samuel Brown b****s@h****m 14
proceps Z****1 14
Lisa Walley l****y@e****g 13
proceps v****e@g****m 5
mikemaehr m****r@g****m 5
W Beecher Baker w****r@p****u 4
omahs 7****s 3
José Luis Pereira j****o@M****l 3
Devarsh Ruparelia d****a@g****m 2
daisie_local d****h@g****m 2
dceades d****s@i****u 2
lc-art1 0****l@g****m 2
David C. Eades d****s@D****l 2
J Richard Flood j****d@J****l 2
and 8 more...

Committer domains:

Issue and Pull Request metadata

Last synced: about 14 hours ago

Total issues: 3,961
Total pull requests: 807
Average time to close issues: 6 months
Average time to close pull requests: 20 days
Total issue authors: 104
Total pull request authors: 21
Average comments per issue: 2.01
Average comments per pull request: 1.57
Merged pull request: 593
Bot issues: 0
Bot pull requests: 118

Past year issues: 97
Past year pull requests: 61
Past year average time to close issues: 19 days
Past year average time to close pull requests: 15 days
Past year issue authors: 24
Past year pull request authors: 7
Past year average comments per issue: 2.54
Past year average comments per pull request: 1.18
Past year merged pull request: 28
Past year bot issues: 0
Past year bot pull requests: 13

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/SpeciesFileGroup/taxonworks

Top Issue Authors

  • mjy (1,328)
  • proceps (694)
  • tmcelrath (424)
  • AntWeb-org (174)
  • LordFlashmeow (104)
  • adrik29 (97)
  • kleintom (90)
  • mabecabrera (76)
  • hhopkins77 (70)
  • LocoDelAssembly (69)
  • debpaul (68)
  • kandakoj (60)
  • jlpereira (59)
  • gdower (54)
  • typophyllum (46)

Top Pull Request Authors

  • kleintom (265)
  • dependabot[bot] (118)
  • LordFlashmeow (117)
  • LocoDelAssembly (73)
  • mjy (53)
  • jlpereira (49)
  • gdower (36)
  • Merfoo (31)
  • TuckerJD (21)
  • jrflood (19)
  • neolefty (12)
  • lc-art1 (4)
  • Kunyao-Alex (1)
  • omahs (1)
  • dshorthouse (1)

Top Issue Labels

  • enhancement (1,680)
  • bug (1,405)
  • task (172)
  • model (151)
  • question (148)
  • blocker (148)
  • API (70)
  • idea (65)
  • export (53)
  • soft validation (32)
  • can't replicate (21)
  • needs more information (19)
  • stale (13)
  • good first issue (12)
  • help wanted (7)
  • exemplary issue (7)
  • dependencies (4)
  • deprecation (3)
  • javascript (2)
  • ruby (2)
  • UI (2)
  • bad data (1)
  • AI (1)

Top Pull Request Labels

  • dependencies (118)
  • ruby (60)
  • javascript (56)

Package metadata

proxy.golang.org: github.com/SpeciesFileGroup/taxonworks

proxy.golang.org: github.com/speciesfilegroup/taxonworks

Dependencies

package-lock.json npm
  • 857 dependencies
package.json npm
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.github/docker-tests/docker-image-test/Gemfile rubygems
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  • rspec-steps ~> 2.1, >= 2.1.1
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Gemfile rubygems
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  • jquery-turbolinks ~> 2.1
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  • pdf-reader ~> 2.2
  • pg ~> 1.1
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  • psych ~> 3.3
  • rack-cors ~> 1.1
  • rails ~> 6.1
  • rails-jquery-autocomplete ~> 1.0.3
  • rails_or ~> 1.1.8
  • rainbow ~> 3.0.0
  • rake ~> 13.0
  • rdf ~> 3.0
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  • redis ~> 4.5
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  • rgb ~> 0.1
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  • roo ~> 2.8, >= 2.8.3
  • roo-xls ~> 1.2
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Gemfile.lock rubygems
  • 268 dependencies
.github/workflows/base-image.yml actions
  • actions/checkout v2 composite
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.github/workflows/build.yml actions
  • actions/cache v3 composite
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.github/workflows/deliver.yml actions
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.github/docker-tests/docker-image-taxonworks/Dockerfile docker
  • sfgrp/taxonworks latest build
.github/docker-tests/docker-image-test/Dockerfile docker
  • ruby 3.1.2 build
Dockerfile docker
  • base latest build
  • sfgrp/taxonworks-base latest build
docker-compose.yml docker
  • mdillon/postgis 10
  • postgis/postgis 12-3.0
.github/docker-tests/docker-compose.yml docker

Score: -Infinity