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Open Sustainable Technology

A curated list of open technology projects to sustain a stable climate, energy supply, biodiversity and natural resources.

TaxonWorks

An integrated web-based workbench for taxonomists and biodiversity scientists.
https://github.com/SpeciesFileGroup/taxonworks

Category: Biosphere
Sub Category: Biodiversity Data Access and Management

Keywords

biodiversity biodiversity-informatics collections describe evolution life nomenclature ruby species taxonomy

Keywords from Contributors

install taxonworks capistrano annotator transforms optimize ontology measur docs help

Last synced: about 16 hours ago
JSON representation

Repository metadata

Workbench for biodiversity informatics.

README.md

TaxonWorks

build
Coverage Status
Chat on Matrix
Link to documentation

Overview

TaxonWorks is a web-based workbench designed for taxonomists and biodiversity scientists. It provides tools to help you capture, organize, and enhance your data, collaborate with others, and prepare your work for analysis and publication. With TaxonWorks, you can easily manage your research data, share it with colleagues, and streamline the process of analyzing and publishing your findings.

To get more information on the project, its vision, and scope see taxonworks.org and docs.taxonworks.org.

License

TaxonWorks is open source and is presently available under the MIT Open Source License.

Funding

The foundation of TaxonWorks is funded by an endowment of the Species File Group. This project was funded in part by NSF-ABI-1356381. Any opinions, findings and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.

Owner metadata

GitHub Events

Total
Last Year

Committers metadata

Last synced: 6 days ago

Total Commits: 24,945
Total Committers: 37
Avg Commits per committer: 674.189
Development Distribution Score (DDS): 0.679

Commits in past year: 1,507
Committers in past year: 11
Avg Commits per committer in past year: 137.0
Development Distribution Score (DDS) in past year: 0.583

Name Email Commits
mjy d****d@g****m 8017
José Luis Pereira p****i@o****m 7228
Jim Tucker t****d@u****u 2700
Hernán Lucas Pereira e****r@g****m 1872
jrflood j****d@i****u 1465
Dmitry Dmitriev a****a@g****m 1426
mbeckman m****n@i****u 777
Tom Klein t****e@g****m 380
eef e****f@i****u 302
Dash Peters 3****w 254
Fauzi Kliman f****n@g****m 225
Geoff Ower g****r@i****u 90
Dmitry Mozzherin d****n@g****m 88
dependabot[bot] 4****] 23
Debbie Paul d****l@i****u 17
eef e****u 15
proceps Z****1 14
Lisa Walley l****y@e****g 13
proceps v****e@g****m 5
mikemaehr m****r@g****m 5
omahs 7****s 3
W Beecher Baker w****r@p****u 3
José Luis Pereira j****o@M****l 3
lc-art1 0****l@g****m 2
dceades d****s@i****u 2
daisie_local d****h@g****m 2
Devarsh Ruparelia d****a@g****m 2
J Richard Flood j****d@J****l 2
David C. Eades d****s@D****l 2
JeGoi j****d@g****m 1
and 7 more...

Committer domains:

Issue and Pull Request metadata

Last synced: 1 day ago

Total issues: 3,861
Total pull requests: 552
Average time to close issues: 5 months
Average time to close pull requests: 18 days
Total issue authors: 98
Total pull request authors: 20
Average comments per issue: 2.1
Average comments per pull request: 1.81
Merged pull request: 441
Bot issues: 0
Bot pull requests: 81

Past year issues: 333
Past year pull requests: 100
Past year average time to close issues: 13 days
Past year average time to close pull requests: 10 days
Past year issue authors: 35
Past year pull request authors: 8
Past year average comments per issue: 2.05
Past year average comments per pull request: 1.77
Past year merged pull request: 68
Past year bot issues: 0
Past year bot pull requests: 30

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/SpeciesFileGroup/taxonworks

Top Issue Authors

  • mjy (1,327)
  • proceps (683)
  • tmcelrath (420)
  • AntWeb-org (132)
  • LordFlashmeow (107)
  • adrik29 (98)
  • mabecabrera (77)
  • LocoDelAssembly (70)
  • hhopkins77 (69)
  • debpaul (64)
  • kandakoj (62)
  • kleintom (61)
  • gdower (57)
  • jlpereira (57)
  • typophyllum (51)

Top Pull Request Authors

  • LordFlashmeow (129)
  • kleintom (90)
  • dependabot[bot] (81)
  • LocoDelAssembly (66)
  • mjy (44)
  • jlpereira (33)
  • Merfoo (31)
  • gdower (26)
  • TuckerJD (21)
  • jrflood (19)
  • lc-art1 (2)
  • neolefty (2)
  • daisieh (1)
  • dshorthouse (1)
  • devarshar (1)

Top Issue Labels

  • enhancement (1,649)
  • bug (1,354)
  • task (174)
  • question (157)
  • model (153)
  • blocker (146)
  • API (72)
  • idea (65)
  • export (55)
  • soft validation (32)
  • can't replicate (22)
  • needs more information (21)
  • stale (13)
  • good first issue (12)
  • exemplary issue (7)
  • help wanted (7)
  • dependencies (4)
  • deprecation (3)
  • javascript (2)
  • ruby (2)
  • UI (2)

Top Pull Request Labels

  • dependencies (81)
  • javascript (46)
  • ruby (33)

Dependencies

package-lock.json npm
  • 857 dependencies
package.json npm
  • @babel/core ^7.18.6 development
  • @babel/plugin-transform-runtime ^7.18.6 development
  • @babel/preset-env ^7.18.6 development
  • @babel/runtime ^7.18.6 development
  • @vue/compiler-sfc ^3.2.37 development
  • babel-loader ^8.2.5 development
  • compression-webpack-plugin ^10.0.0 development
  • css-loader ^6.7.1 development
  • css-minimizer-webpack-plugin ^4.0.0 development
  • eslint ^8.18.0 development
  • eslint-config-standard ^17.0.0 development
  • eslint-plugin-import ^2.26.0 development
  • eslint-plugin-n ^15.2.3 development
  • eslint-plugin-node ^11.1.0 development
  • eslint-plugin-promise ^6.0.0 development
  • eslint-plugin-standard ^4.1.0 development
  • eslint-plugin-vue ^9.1.1 development
  • mini-css-extract-plugin ^2.6.1 development
  • postcss ^8.4.14 development
  • postcss-flexbugs-fixes ^5.0.2 development
  • postcss-import ^14.1.0 development
  • postcss-loader ^7.0.0 development
  • postcss-preset-env ^7.7.2 development
  • raw-loader ^4.0.2 development
  • resolve-url-loader ^5.0.0 development
  • sass ^1.53.0 development
  • sass-loader ^13.0.2 development
  • style-loader ^3.3.1 development
  • stylus ^0.58.1 development
  • stylus-loader ^7.0.0 development
  • terser-webpack-plugin ^5.3.3 development
  • url ^0.11.0 development
  • vue-loader ^17.0.0 development
  • webpack ^5.73.0 development
  • webpack-assets-manifest ^5.1.0 development
  • webpack-cli ^4.10.0 development
  • webpack-dev-server ^4.9.2 development
  • webpack-merge ^5.8.0 development
  • worker-loader ^3.0.8 development
  • @geoman-io/leaflet-geoman-free ^2.13.0
  • @ibm/plex ^6.0.2
  • @sfgrp/sled ^1.0.3
  • @sfgrp/svg-radial-menu ^1.0.7
  • axios ^0.27.2
  • chart.js ^3.8.0
  • d3 ^7.5.0
  • dompurify ^2.3.8
  • easymde ^2.16.1
  • exif-js ^2.3.0
  • json2csv ^5.0.7
  • leaflet ^1.8.0
  • leaflet.pattern ^0.1.0
  • parse-dms 0.0.5
  • pdfjs-dist 2.14.305
  • qs ^6.11.0
  • shakapacker 6.4.1
  • v-hotkey ^0.9.0
  • vue ^3.2.37
  • vue-handy-scroll ^3.0.1
  • vue-hotkeys 0.0.1
  • vue-tippy ^6.0.0-alpha.58
  • vue-turbolinks ^2.2.2
  • vuedraggable ^4.1.0
  • vuex ^4.0.2
.github/docker-tests/docker-image-test/Gemfile rubygems
  • browsermob-proxy ~> 0.3.1
  • capybara ~> 3.29
  • rexml ~> 3.2, >= 3.2.5
  • rspec ~> 3.8
  • rspec-steps ~> 2.1, >= 2.1.1
  • webdrivers ~> 4.5
  • webrick ~> 1.7
Gemfile rubygems
  • better_errors ~> 2.9 development
  • binding_of_caller >= 0 development
  • brakeman >= 4.6.1, ~> 5.1 development
  • capybara ~> 3.18 development
  • codecov ~> 0.6.0 development
  • database_cleaner ~> 2.0 development
  • factory_bot_rails ~> 6.2 development
  • faker ~> 2.10 development
  • guard-rspec ~> 4.7.3 development
  • os ~> 1.0, >= 1.0.1 development
  • parallel_tests >= 0 development
  • prawn ~> 2.4.0 development
  • puma ~> 5.5 development
  • rails-controller-testing ~> 1.0.2 development
  • rspec ~> 3.6 development
  • rspec-activemodel-mocks ~> 1.1.0 development
  • rspec-rails ~> 5.0 development
  • rubocop ~> 1.20 development
  • rubocop-faker ~> 1.1 development
  • rubocop-performance ~> 1.10 development
  • rubocop-rails ~> 2.4 development
  • rubocop-rspec ~> 2.6 development
  • ruby-prof ~> 1.2 development
  • sdoc ~> 2.2.0 development
  • seedbank ~> 0.5.0 development
  • selenium-webdriver ~> 4.2.0 development
  • simplecov >= 0 development
  • spring-commands-rspec ~> 1.0.4 development
  • timecop ~> 0.9.1 development
  • vcr ~> 6.0 development
  • web-console ~> 4.0, >= 4.0.1 development
  • webdrivers ~> 5.0 development
  • webmock ~> 3.8 development
  • activerecord-postgis-adapter ~> 7.0
  • acts_as_list ~> 1.0
  • amazing_print ~> 1.4.0
  • barby ~> 0.6.8
  • bcrypt ~> 3.1.11
  • best_in_place >= 0
  • bibtex-ruby ~> 6.0
  • biodiversity >= 0
  • bundler ~> 2.0
  • chartkick ~> 4.0
  • chronic ~> 0.10.2
  • chunky_png ~> 1.4.0
  • citeproc-ruby ~> 1.1.10
  • closure_tree ~> 7.0
  • csl ~> 1.6.0
  • csl-styles ~> 1.0.1.8
  • daemons ~> 1.4.1
  • delayed_job_active_record ~> 4.1.3
  • dropzonejs-rails ~> 0.8.1
  • dwc-archive >= 0
  • dwc_agent ~> 3.0
  • exception_notification ~> 4.4
  • execjs ~> 2.8.1
  • ffi-geos ~> 2.3.0
  • gnfinder ~> 0.16
  • gpx >= 0
  • groupdate ~> 5.2
  • hiredis ~> 0.6.1
  • indefinite_article ~> 0.2.4
  • jbuilder ~> 2.7
  • jquery-rails ~> 4.4
  • jquery-turbolinks ~> 2.1
  • jquery-ui-rails ~> 6.0.1
  • kaminari ~> 1.2.0
  • logic_tools >= 0
  • logical_query_parser >= 0
  • matrix ~> 0.4.2
  • modularity ~> 3.0.0
  • namecase ~> 2.0
  • net-smtp ~> 0.3.1
  • paper_trail ~> 12.0
  • paperclip >= 0
  • paperclip-meta ~> 3.0
  • passenger ~> 6.0.2
  • pdf-reader ~> 2.2
  • pg ~> 1.1
  • postgresql_cursor ~> 0.6.1
  • psych ~> 3.3
  • rack-cors ~> 1.1
  • rails ~> 6.1
  • rails-jquery-autocomplete ~> 1.0.3
  • rails_or ~> 1.1.8
  • rainbow ~> 3.0.0
  • rake ~> 13.0
  • rdf ~> 3.0
  • redcarpet ~> 3.4
  • redis ~> 4.5
  • responders ~> 3.0
  • rgb ~> 0.1
  • rgeo ~> 2.2
  • rgeo-geojson ~> 2.1, >= 2.1.1
  • rgeo-proj4 ~> 3.0, >= 3.0.1
  • rmagick ~> 4.2, >= 4.2.2
  • roo ~> 2.8, >= 2.8.3
  • roo-xls ~> 1.2
  • ruby-graphviz ~> 1.2.5
  • ruby-units ~> 2.3.0
  • rubyzip ~> 2.3.0
  • sassc-rails ~> 2.1.0
  • serrano >= 0
  • shakapacker ~> 6.3
  • shortener ~> 0.8.0
  • sprockets ~> 3.7.2
  • sprockets-es6 ~> 0.9.2
  • sprockets-rails ~> 3.2.0
  • sqed ~> 0.7.0
  • taxonifi ~> 0.6.0
  • term-ansicolor ~> 1.6
  • thor ~> 1.1.0
  • turbolinks ~> 5.2.0
  • tzinfo-data ~> 1.2019
  • uglifier ~> 4.2
  • validates_timeliness ~> 4.1, >= 4.1.1
  • waxy ~> 0.1
  • zaru ~> 0.3.0
  • zip_tricks ~> 5.6
Gemfile.lock rubygems
  • 268 dependencies
.github/workflows/base-image.yml actions
  • actions/checkout v2 composite
  • docker/login-action v1 composite
.github/workflows/build.yml actions
  • actions/cache v3 composite
  • actions/checkout v3 composite
  • actions/setup-node v3 composite
  • ruby/setup-ruby v1 composite
  • postgis/postgis 12-3.0 docker
.github/workflows/deliver.yml actions
  • actions/cache v3 composite
  • actions/checkout v3 composite
  • actions/github-script v6 composite
  • docker/login-action v2 composite
.github/docker-tests/docker-image-taxonworks/Dockerfile docker
  • sfgrp/taxonworks latest build
.github/docker-tests/docker-image-test/Dockerfile docker
  • ruby 3.1.2 build
Dockerfile docker
  • base latest build
  • sfgrp/taxonworks-base latest build
docker-compose.yml docker
  • mdillon/postgis 10
  • postgis/postgis 12-3.0
.github/docker-tests/docker-compose.yml docker

Score: 10.421060362759361