PlanktonIndividuals.jl
This package simulates the behaviors of an ensemble of phytoplankton individuals.
https://github.com/JuliaOcean/PlanktonIndividuals.jl
Category: Biosphere
Sub Category: Marine Life and Fishery
Keywords from Contributors
ocean-modelling tracers
Last synced: about 19 hours ago
JSON representation
Repository metadata
This package simulates the behaviors of an ensemble of phytoplankton individuals.
- Host: GitHub
- URL: https://github.com/JuliaOcean/PlanktonIndividuals.jl
- Owner: JuliaOcean
- License: mit
- Created: 2019-03-27T15:31:29.000Z (about 6 years ago)
- Default Branch: master
- Last Pushed: 2025-04-03T08:21:42.000Z (25 days ago)
- Last Synced: 2025-04-22T08:03:37.444Z (6 days ago)
- Language: Julia
- Homepage:
- Size: 1.8 GB
- Stars: 31
- Watchers: 7
- Forks: 6
- Open Issues: 4
- Releases: 44
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
README.md
PlanktonIndividuals.jl
PlanktonIndividuals.jl is a fast individual-based model written in Julia that can be run on both CPU and GPU. It simulates the life cycle of phytoplankton cells as Lagrangian particles in the ocean while nutrients are represented as Eulerian, density-based tracers using a 3rd order advection scheme. The model is used to simulate and interpret the temporal and spacial variations of phytoplankton cell densities and stoichiometry as well as growth and division behaviors induced by diel cycle and physical motions ranging from sub-mesoscale to large scale processes.
Installation
To add PlanktonIndividuals.jl to your Julia environment:
using Pkg; Pkg.add("PlanktonIndividuals.jl")
Use Examples
1. Simple Flow Fields In Two Dimensions
using PlanktonIndividuals
p = dirname(pathof(PlanktonIndividuals))
#include(joinpath(p,"../examples/vertical_2D_example.jl"))
include(joinpath(p,"../examples/horizontal_2D_example.jl"))
2. Closer Look Into One Grid Box
using PlanktonIndividuals
p = dirname(pathof(PlanktonIndividuals))
include(joinpath(p,"../examples/0D_experiment.jl"))
3. Turbulent Flow Fields In Three Dimensions
Here Oceananigans.jl is used to generate velocity fields and then use those to drive the individual-based model.
using PlanktonIndividuals
p = dirname(pathof(PlanktonIndividuals))
include(joinpath(p,"../examples/surface_mixing_3D_example.jl"))
Owner metadata
- Name: JuliaOcean
- Login: JuliaOcean
- Email:
- Kind: organization
- Description:
- Website:
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/41747359?v=4
- Repositories: 10
- Last ynced at: 2023-03-03T21:25:17.188Z
- Profile URL: https://github.com/JuliaOcean
GitHub Events
Total
- Create event: 8
- Commit comment event: 4
- Release event: 2
- Watch event: 2
- Delete event: 5
- Issue comment event: 2
- Push event: 35
- Pull request event: 8
- Fork event: 1
Last Year
- Create event: 8
- Commit comment event: 4
- Release event: 2
- Watch event: 2
- Delete event: 5
- Issue comment event: 2
- Push event: 35
- Pull request event: 8
- Fork event: 1
Committers metadata
Last synced: 7 days ago
Total Commits: 951
Total Committers: 4
Avg Commits per committer: 237.75
Development Distribution Score (DDS): 0.067
Commits in past year: 71
Committers in past year: 2
Avg Commits per committer in past year: 35.5
Development Distribution Score (DDS) in past year: 0.014
| Name | Commits | |
|---|---|---|
| zhenwu0728 | z****u@m****u | 887 |
| gaelforget | g****t@m****u | 60 |
| Zhen Wu | z****u@W****l | 2 |
| CompatHelper Julia | c****y@j****g | 2 |
Committer domains:
- mit.edu: 2
- julialang.org: 1
Issue and Pull Request metadata
Last synced: 2 days ago
Total issues: 14
Total pull requests: 73
Average time to close issues: 4 months
Average time to close pull requests: 5 days
Total issue authors: 4
Total pull request authors: 3
Average comments per issue: 6.29
Average comments per pull request: 0.34
Merged pull request: 65
Bot issues: 0
Bot pull requests: 9
Past year issues: 3
Past year pull requests: 16
Past year average time to close issues: N/A
Past year average time to close pull requests: 7 days
Past year issue authors: 1
Past year pull request authors: 3
Past year average comments per issue: 1.67
Past year average comments per pull request: 0.06
Past year merged pull request: 12
Past year bot issues: 0
Past year bot pull requests: 4
Top Issue Authors
- Atreyu-94 (6)
- zhenwu0728 (6)
- JuliaTagBot (1)
- gaelforget (1)
Top Pull Request Authors
- zhenwu0728 (45)
- gaelforget (19)
- github-actions[bot] (9)
Top Issue Labels
- good first issue (2)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- julia: 3 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 43
juliahub.com: PlanktonIndividuals
This package simulates the behaviors of an ensemble of phytoplankton individuals.
- Homepage:
- Documentation: https://docs.juliahub.com/General/PlanktonIndividuals/stable/
- Licenses: MIT
- Latest release: 0.7.5 (published about 1 month ago)
- Last Synced: 2025-04-27T01:12:05.653Z (1 day ago)
- Versions: 43
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 3 Total
-
Rankings:
- Dependent repos count: 9.94%
- Stargazers count: 22.718%
- Average: 24.918%
- Forks count: 28.099%
- Dependent packages count: 38.915%
Dependencies
- julia-actions/setup-julia latest composite
- JuliaRegistries/TagBot v1 composite
- actions/checkout v2 composite
- julia-actions/setup-julia latest composite
- actions/checkout v2 composite
- codecov/codecov-action v1 composite
- julia-actions/julia-buildpkg latest composite
- julia-actions/julia-processcoverage v1 composite
- julia-actions/julia-runtest latest composite
- julia-actions/setup-julia latest composite
Score: 6.040254711277414