PySDM - PySDM v2.118

What's Changed

• bring back PyPI-conforming lowercase name of the project by @slayoo in https://github.com/open-atmos/PySDM/pull/1584

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.117...v2.118

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 2 days ago

PySDM - PySDM v2.117

What's Changed

• Minimize setup.py and update pyproject.toml + numerous pre-commit changes by @Sfonxu in https://github.com/open-atmos/PySDM/pull/1577

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.116...v2.117

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 2 days ago

PySDM - PySDM v2.116

What's Changed

• bump setup-julia github action version; switch julia CI runs from ubuntu to macos (workarounding Julia vs. OpenSSL linking issue with new Ubuntu); point PyCall to the same python as used by pip install ... by @Sfonxu in https://github.com/open-atmos/PySDM/pull/1583
• add new example for ventilation factors (Pruppacher and Rasmussen 1979) by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1573

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.115...v2.116

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 3 days ago

PySDM - PySDM v2.115

What's Changed

• new tutorial: SDM algorithm (with code and animation for Wikipedia article on SDM) by @slayoo in https://github.com/open-atmos/PySDM/pull/1579

thanks @emmacware for help!

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.114...v2.115

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 5 days ago

PySDM - PySDM v2.114

What's Changed

• ventilation: new example based on fig. 1 from Stewart 1975 (and including data from Kinzer & Gunn 1951) by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1556

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.113...v2.114

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 8 days ago

PySDM - PySDM v2.113

What's Changed

• INAS freezing temperature sampling in A&A example by @slayoo in https://github.com/open-atmos/PySDM/pull/1563
• recording temperature of last freezing for time-dependent immersion freezing by @slayoo in https://github.com/open-atmos/PySDM/pull/1566

thanks @tluettm for reviving these issues and for code review.

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.112...v2.113

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 8 days ago

PySDM - PySDM v2.112

What's Changed

• typo in docs homepage by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1569
• delete .github/workflows/projects.yml for closing project-board by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1570
• rebalancing load across CI workflows to avoid timeouts by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1575

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.111...v2.112

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 9 days ago

PySDM - PySDM v2.111

What's Changed

• point merged-PR todo labels to a relevant issue by @slayoo in https://github.com/open-atmos/PySDM/pull/1558
• Bump setuptools-scm from 8.2.0 to 8.2.1 by @dependabot in https://github.com/open-atmos/PySDM/pull/1548
• set up html/pysdm -> html/PySDM redirect in docs by @slayoo in https://github.com/open-atmos/PySDM/pull/1560
• revert #1560 (the case-sensitive folder name is handled internally by GitHub pages) by @slayoo in https://github.com/open-atmos/PySDM/pull/1561
• add isotope kinetic fractionation factors to physics (Craig-Gordon and Jouzel-Merlivat-1984) + refactor existing code in examples to use it + add handling of web.archive urls in bib script by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1565

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.110...v2.111

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 17 days ago

PySDM - PySDM v2.110

What's Changed

• Add description in init file in Bolin's example by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1557
• vapour deposition on ice (temporarily as a separate dynamic - to be combined with condensation); introducing physics.latent_heat_sublimation (and renamings in physics: latent_heat to latent_heat_vapourisation, condensation_coordinate to diffusion_coordinate) by @slayoo in https://github.com/open-atmos/PySDM/pull/1389

Kudos to @tluettm for spearheading the vapour-deposition-on-ice developments.

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.109...v2.110

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 28 days ago

PySDM - PySDM v2.109

What's Changed

• remove 32-bit Windows CI using Appveyor (since Numba stopped packaging for 32-bit Windows) by @slayoo in https://github.com/open-atmos/PySDM/pull/1549
• switching from volume to mass condensation coordinates, handling dm_dt(r_dr_dt) in particle_shape_and_density by @slayoo in https://github.com/open-atmos/PySDM/pull/1538

thanks @tluettm for pointing out the issue of the volume coordinates

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.108...v2.109

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 1 month ago

PySDM - PySDM v2.108

What's Changed

• Bump setuptools from 75.8.2 to 76.0.0 in /examples by @dependabot in https://github.com/open-atmos/PySDM/pull/1534
• mixed-phase moments: new test and filtering attr name fix by @slayoo in https://github.com/open-atmos/PySDM/pull/1536
• fix doi links + update bib json by @slayoo in https://github.com/open-atmos/PySDM/pull/1537
• assert helping to investigate R&S '82 example failures on Windows by @slayoo in https://github.com/open-atmos/PySDM/pull/1541
• R&S '82 example refactor: extract the definition of the custom MultiBox env from a notebook cell to a separate .py file by @slayoo in https://github.com/open-atmos/PySDM/pull/1542
• fixed dry-air molar mass (number vs. mass weighting), l_tri as a computed derived value; bib-script enhancements; Trivia.K2C and C2K; introducing XFAIL for R&S example on Windows (to be addressed in subsequent PR) by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1507

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.107...v2.108

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 1 month ago

PySDM - PySDM v2.107

What's Changed

• immersion freezing paper revision notebook updates (cosmetics, DOI, year change to 2025) by @slayoo in https://github.com/open-atmos/PySDM/pull/1484

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.106...v2.107

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 2 months ago

PySDM - PySDM v2.106

What's Changed

• docs: adding mentions of Particula and Cloudy, clarifying that PySDM is enough to construct a cloud parcel model in Python by @slayoo in https://github.com/open-atmos/PySDM/pull/1523
• Bump setuptools from 75.8.1 to 75.8.2 in /examples by @dependabot in https://github.com/open-atmos/PySDM/pull/1519
• Update package name to lowercase in setup.py to match binary distribution format that is required on PyPi by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1528
• Update examples package name in setup.py to match binary distribution format that is required on PyPi by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1529

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.105...v2.106

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 2 months ago

PySDM - PySDM v2.105

What's Changed

• docs fix: add badges to init so that docs include the badges by @slayoo in https://github.com/open-atmos/PySDM/pull/1522
• isotopes: new Global Meteoric Water Line example (estimating coefficients through alphas) by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1520
• refactor: remove references to backend from freezing dynamic and move freezing unit test to tests/unit_tests/dynamics. closes #1154 by @slayoo in https://github.com/open-atmos/PySDM/pull/1515

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.104...v2.105

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 2 months ago

PySDM - PySDM v2.104

What's Changed

• isotopes: add Gonfiantini 1986 example with fig. 3-1 reproduction (Rayleigh distillation for different RH for 2H and 18O + GMWL) by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1521

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.103...v2.104

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 2 months ago

PySDM - PySDM v2.103

What's Changed

• Bump setuptools-scm from 8.1.0 to 8.2.0 in /examples by @dependabot in https://github.com/open-atmos/PySDM/pull/1517
• Bump setuptools from 75.8.0 to 75.8.1 in /examples by @dependabot in https://github.com/open-atmos/PySDM/pull/1518
• new example: Toon et al. 1980 (hello-world for using PySDM for extraterrestrial clouds, here for Titan); variable-g/constant-T hydrostatics formulae by @aleksandratal in https://github.com/open-atmos/PySDM/pull/142

New Contributors

• @aleksandratal made their first contribution in https://github.com/open-atmos/PySDM/pull/142

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.102...v2.103

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 2 months ago

PySDM - PySDM v2.102

What's Changed

• new tests for mixed-phase moments, signed-water-mass attribute, radius_to_mass() for mixed phased spheres by @tluettm in https://github.com/open-atmos/PySDM/pull/1513

New Contributors

• @tluettm made their first contribution in https://github.com/open-atmos/PySDM/pull/1513

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.101...v2.102

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 2 months ago

PySDM - PySDM v2.101

What's Changed

• refactor freezing code moving Poissonian void probability formula to Trivia; support for docstrings in Formulae._c_inline() by @slayoo in https://github.com/open-atmos/PySDM/pull/1511
• clarify dimensionality checks for dimensionless units (thanks @AgnieszkaZaba for hint) by @slayoo in https://github.com/open-atmos/PySDM/pull/1512

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.100...v2.101

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 3 months ago

PySDM - PySDM v2.100

What's Changed

• docstrings formatting changes stemming from precommit selfupdate by @slayoo in https://github.com/open-atmos/PySDM/pull/1510
• removal of time-tracking in parcel env. code (in favour of using Particulator's step counter); removal of unneeded fields: formulae and params by @slayoo in https://github.com/open-atmos/PySDM/pull/1509

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.99...v2.100

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 3 months ago

PySDM - PySDM v2.99

What's Changed

• constants defaults: more docstrings and literature references, proper docstring placement (closes #1448), bib-script enhancements by @slayoo in https://github.com/open-atmos/PySDM/pull/1485

thanks @AgnieszkaZaba for help

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.98...v2.99

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 3 months ago

PySDM - PySDM v2.98

What's Changed

• Zenodo developers metadata update (affiliation city, years) by @claresinger in https://github.com/open-atmos/PySDM/pull/1503
• add dependency on PySDM-examples and open-atmos-jupyter-utils packages by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1504
• delete notebook_vars.py from PySDM_examples.utils by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1505

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.97...v2.98

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 3 months ago

PySDM - PySDM v2.97

What's Changed

• add/update contributor credits in .zenodo.json. closes #1500 by @slayoo in https://github.com/open-atmos/PySDM/pull/1501

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.96...v2.97

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 3 months ago

PySDM - PySDM v2.96

What's Changed

• Bump setuptools from 75.6.0 to 75.8.0 in /examples by @dependabot in https://github.com/open-atmos/PySDM/pull/1497
• add RH_ice to moist env thermodynamic state by @slayoo & @tluettm in https://github.com/open-atmos/PySDM/pull/1496
• Picciotto et al. 1960 isotopic temperature inference and [hydro]meteoric water line formulae (journal club paper); fixes in bibliography checks; code cleanups by @slayoo & @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1498

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.95...v2.96

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 3 months ago

PySDM - PySDM v2.95

What's Changed

• add installation of paraview to run on colab by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1486

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.94...v2.95

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by AgnieszkaZaba 4 months ago

PySDM - PySDM v2.94

What's Changed

• add docs-generating script that allows for specifying input and output path by @Sfonxu in https://github.com/open-atmos/PySDM/pull/1466
• move paraview_hello_world notebook from examples to HOWTOs; add cell triggering paraview installation on Colab by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1481
• Bibliography in documentation (data in .json file, scripts checking consistency with DOI mentions in the codebase) by @pawelmagnu in https://github.com/open-atmos/PySDM/pull/1483

New Contributors

• @Sfonxu made their first contribution in https://github.com/open-atmos/PySDM/pull/1466

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.93...v2.94

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 4 months ago

PySDM - PySDM v2.93

What's Changed

• regenerate immersion freezing-paper fig A2 using a GPU by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1480

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.92...v2.93

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by AgnieszkaZaba 4 months ago

PySDM - PySDM v2.92

What's Changed

• bump devops tests to include checks for notebook badges by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1453

Kudos to @AgnieszkaZaba for populating all example notebooks with output figures!

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.91...v2.92

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 4 months ago

PySDM - PySDM v2.91

What's Changed

• update url for tests.yml badge by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1472
• change to pull_request_target in add to project action by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1474
• remove fig number arg in a call to pyplot.figure (causes UserWarning in matplotlib >= 3.10.0) by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1476
• shorten CI times by: moving some smoke tests to a new parcel_d; dividing examples into more suites by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1451
• fix docstring for velocity component product by @slayoo & @olastrz in https://github.com/open-atmos/PySDM/pull/1475
• fix setuptools_scm config by using "no-local-version" scheme; add check that wheel names do not contain "+" chars (otherwise PyPI fails to accept the upload) by @slayoo in https://github.com/open-atmos/PySDM/pull/1477

thanks @RonnyPfannschmidt for help in sorting out setuptools_scm local-version issue

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.90...v2.91

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 4 months ago

PySDM - PySDM v2.90

What's Changed

• Bump setuptools from 75.3.0 to 75.6.0 in /examples by @dependabot in https://github.com/open-atmos/PySDM/pull/1425
• Create projects.yml to automate adding new issues and PR to project b… by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1446
• docs landing site beef up by @slayoo in https://github.com/open-atmos/PySDM/pull/1465
• README: fix logo url, remove old animation, move docs links up by @slayoo in https://github.com/open-atmos/PySDM/pull/1468
• change path to tests.yml - cleanup after separating pypi and tests by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1471

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.89...v2.90

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by AgnieszkaZaba 4 months ago

PySDM - PySDM v2.89

What's Changed

• add Bolin 1958 entry to examples gallery, fix markdown syntax in notebook by @slayoo in https://github.com/open-atmos/PySDM/pull/1458
• CI workflows: do not run tests/examples on release (run only before and after merging); move pdoc and pypi workflows to separate .yml files by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1461

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.88...v2.89

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 5 months ago

PySDM - PySDM v2.88

What's Changed

• fix badges in Bolin 1958 table 1 example notebook by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1456
• add support for the deci SI prefix in FakeUnitRegistry by @slayoo in https://github.com/open-atmos/PySDM/pull/1457
• Vtk exporter fix to save more than one product by @olastrz in https://github.com/open-atmos/PySDM/pull/1439

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.87...v2.88

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 5 months ago

PySDM - PySDM v2.87

What's Changed

• Add Bolin 1958 Table 1 example (isotopic adjustment timescale, formulae-only no-environment setup) by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1431

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.86...v2.87

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 5 months ago

PySDM - PySDM v2.86

What's Changed

• remove unrelated settings from Arabas_et_al_2015 definitions by @slayoo in https://github.com/open-atmos/PySDM/pull/1371
• Fix link to PySDM-examples package in PySDM README.md by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1440
• switch to dark mode for docs by @slayoo in https://github.com/open-atmos/PySDM/pull/1444
• add a HOWTO notebook depicting how to manage units in PySDM by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1443

kudos @Sfonxu for suggesting and finding a way how to do dark mode in the docs!

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.85...v2.86

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 5 months ago

PySDM - PySDM v2.85

What's Changed

• changes scaling imgs to max width by @pawelmagnu in https://github.com/open-atmos/PySDM/pull/1435

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.84...v2.85

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by AgnieszkaZaba 5 months ago

PySDM - PySDM v2.84

What's Changed

• docs: fix link in pysdm_landing.md by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1427
• docs: correct link to figs from Arabas 2023 by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1426

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.83...v2.84

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 5 months ago

PySDM - v2.83

What's Changed

• remove version pin for flexparser by @slayoo in https://github.com/open-atmos/PySDM/pull/1422
• bump devops_tests to include checks for badge presence and Colab header cell by @slayoo & @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1403

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.82...v2.83

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 5 months ago

PySDM - PySDM v2.82

What's Changed

• css fixup to nav in index.html by @pawelmagnu in https://github.com/open-atmos/PySDM/pull/1419
• improve test coverage for impl.Mesh and products.SufracePrecipitation; introduce Mesh.domain_bottom_surface_area; switch from volume to mass for rainfall counting; improve docstrings (default length of omitted dims, liquid/ice phase). closes #708 by @slayoo in https://github.com/open-atmos/PySDM/pull/1399

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.81...v2.82

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 6 months ago

PySDM - PySDM v2.81

What's Changed

• NumPy compatibility fixes (API elements deprecated in 1.25) + Python 3.12 compatibility fixes (setuptools, etc) + upper Python version bump for CI to 3.12 by @slayoo in https://github.com/open-atmos/PySDM/pull/1402

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.80...v2.81

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 6 months ago

PySDM - PySDM v2.80

What's Changed

• bump CI mac jobs to macos-13 from macos-12 (will be phased out in Dec 24) by @slayoo in https://github.com/open-atmos/PySDM/pull/1416
• documentation beef up (incl. example gallery and badge generation) by @pawelmagnu in https://github.com/open-atmos/PySDM/pull/1407
• Arabas et al. 2023 immersion freezing example updates to match paper revision by @slayoo in https://github.com/open-atmos/PySDM/pull/1339

New Contributors

• @pawelmagnu made their first contribution in https://github.com/open-atmos/PySDM/pull/1407

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.79...v2.80

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 6 months ago

PySDM - PySDM v2.79

What's Changed

• use setup-python action also on Apple silicon CI runs (since the action now supports ARM Python) by @slayoo in https://github.com/open-atmos/PySDM/pull/1404
• fix yml syntax in tests workflow; temporarily disable selected test suites on macos-14 CI; bump PyPartMC CI ver req by @slayoo in https://github.com/open-atmos/PySDM/pull/1405
• Updated pdf export in paraview_hello_world.ipynb to match current Paraview API by @olastrz in https://github.com/open-atmos/PySDM/pull/1408
• workaround flexparser frozen dataclass issue by @AgnieszkaZaba in https://github.com/open-atmos/PySDM/pull/1412

New Contributors

• @olastrz made their first contribution in https://github.com/open-atmos/PySDM/pull/1408
• @AgnieszkaZaba made their first contribution in https://github.com/open-atmos/PySDM/pull/1412

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.78...v2.79

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 6 months ago

PySDM - PySDM v2.78

What's Changed

• fix error reporting on unknown attribute inquiry by @slayoo in https://github.com/open-atmos/PySDM/pull/1393
• bump lower Python version for CI from 3.8 to 3.9 (EOL of 3.8) by @slayoo in https://github.com/open-atmos/PySDM/pull/1400
• fix Miyake example notebook by adding Colab header cell by @slayoo in https://github.com/open-atmos/PySDM/pull/1398
• bump actions/[upload|download]-artifact from v3 to v4 in /.github/workflows by @dependabot in https://github.com/open-atmos/PySDM/pull/1386

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.77...v2.78

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 7 months ago

PySDM - PySDM v2.77

What's Changed

• refactor saturation vapour pressure formulae to avoid using temperatures in Celsius by @Aphus in https://github.com/open-atmos/PySDM/pull/1388

New Contributors

• @Aphus made their first contribution in https://github.com/open-atmos/PySDM/pull/1388

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.76...v2.77

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 7 months ago

PySDM - PySDM v2.76

• fixed TODO label in the new seeding code

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.75...v2.76

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 7 months ago

PySDM - PySDM v2.75

What's Changed

• Seeding dynamic and associated initialisation logic (super-droplet injection during simulation) in https://github.com/open-atmos/PySDM/pull/1367

Kudos @jtbuch & @claresinger!

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.74...v2.75

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 7 months ago

PySDM - PySDM v2.74

What's Changed

• pdoc3 cleanup by @slayoo in https://github.com/open-atmos/PySDM/pull/1379
• silence NumPy deprecation warning on CI for Python 3.12 by pinning version to 1.26.4 by @slayoo in https://github.com/open-atmos/PySDM/pull/1383
• PySDM logo by @NeKo2903 in https://github.com/open-atmos/PySDM/pull/1381

New Contributors

• @NeKo2903 made their first contribution in https://github.com/open-atmos/PySDM/pull/1381

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.73...v2.74

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 8 months ago

PySDM - PySDM v2.73

What's Changed

• introducing @register_environment decorator to solve environment-reuse issue by @slayoo in https://github.com/open-atmos/PySDM/pull/1373

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.72...v2.73

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 9 months ago

PySDM - PySDM v2.72

What's Changed

• phase out pdoc3 in favour of pdoc by @slayoo in https://github.com/open-atmos/PySDM/pull/1377

thanks @pawelmagnu for help

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.71...v2.72

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 9 months ago

PySDM - PySDM v2.71

What's Changed

• avoid matplotlib 3.9.1 (due to https://github.com/matplotlib/matplotlib/issues/28551) by @slayoo in https://github.com/open-atmos/PySDM/pull/1375
• cleanup commented-out code in kinematic 1D env by @slayoo in https://github.com/open-atmos/PySDM/pull/1374
• bump devops tests version by @slayoo in https://github.com/open-atmos/PySDM/pull/1376
• introducing @register_dynamic decorator to solve dynamic-reuse issue by @slayoo in https://github.com/open-atmos/PySDM/pull/1372

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.70...v2.71

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 9 months ago

PySDM - PySDM v2.70

What's Changed

• introducing @register_product decorator to make product instances re-usable (previously calling .register() from a subsequent builder invalidated the former builder/particulator) by @slayoo in https://github.com/open-atmos/PySDM/pull/1370

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.69...v2.70

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 9 months ago

PySDM - PySDM v2.69

What's Changed

• rafactor making attributes.healthy a property by @slayoo in https://github.com/open-atmos/PySDM/pull/1366
• fix logic for handling seed values in Formulae ctor (seed=0 was treated as seed=None) by @slayoo in https://github.com/open-atmos/PySDM/pull/1368

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.68...v2.69

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 9 months ago

PySDM - PySDM v2.68

What's Changed

• attribute request logic refactor; relaxed-velocity docstring update (order of registration should not matter for attributes, unit test asserting it included); CI job dependencies refactor by @slayoo in https://github.com/open-atmos/PySDM/pull/1288

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.67...v2.68

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 9 months ago

PySDM - PySDM v2.67

What's Changed

• Fig 2c in (new) Adade & Albuquerque 2024 example; new physics submodule: bulk phase partitioning with one impl as in Kaul et al. 2015 by @slayoo in https://github.com/open-atmos/PySDM/pull/1365

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.66...v2.67

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 9 months ago

PySDM - PySDM v2.66

What's Changed

• replacing attribute mapper.py with a decorator-based logic. closes #451 by @slayoo in https://github.com/open-atmos/PySDM/pull/1359

Kudos to @piotrbartman for suggesting how to solve the "mapper issue"!

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.65...v2.66

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 9 months ago

PySDM - PySDM v2.65

What's Changed

• Bump pypartmc from 1.3.2 to 1.3.3 by @dependabot in https://github.com/open-atmos/PySDM/pull/1351
• fix badge links in examples/README by @slayoo in https://github.com/open-atmos/PySDM/pull/1352
• add missing colab-install cell in example notebook by @slayoo in https://github.com/open-atmos/PySDM/pull/1353
• regenerated notebook by @slayoo in https://github.com/open-atmos/PySDM/pull/1354
• G&P example cleanups (incl. enforcing serial mode for CPU backend) by @slayoo in https://github.com/open-atmos/PySDM/pull/1355
• replace empty returns in tests with annotated pytest.skip() calls. closes #1076 by @slayoo in https://github.com/open-atmos/PySDM/pull/1356
• complete volume-to-mass transition for base attribute. closes #798 by @slayoo in https://github.com/open-atmos/PySDM/pull/1357
• freezing tests volume-to-mass refactor. closes #1262 by @slayoo in https://github.com/open-atmos/PySDM/pull/1358

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.64...v2.65

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 10 months ago

PySDM - PySDM v2.64

What's Changed

• Bump pypartmc from 1.3.1 to 1.3.2 by @dependabot in https://github.com/open-atmos/PySDM/pull/1348
• add STP option to ParticleSizeSpectrum* products by @slayoo in https://github.com/open-atmos/PySDM/pull/1346

Thanks @jbarr444 for feedback

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.63...v2.64

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 10 months ago

PySDM - PySDM v2.63

What's Changed

• bump Numba CI requirement to 0.60 by @slayoo in https://github.com/open-atmos/PySDM/pull/1340
• temporarily restrict NumPy version requirement to <2.0.0 by @slayoo in https://github.com/open-atmos/PySDM/pull/1345
• replacing optional (sic!) normalisation by dv with meaningful specific=True/False flag in ParticleSizeSpectrum product by @slayoo in https://github.com/open-atmos/PySDM/pull/1343

Thanks @jbarr444 for reporting the issue with ParticleSizeSpectrum product!

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.62...v2.63

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 10 months ago

PySDM - PySDM v2.62

What's Changed

• isotopes: Rozanski & Sonntag example by @slayoo in https://github.com/open-atmos/PySDM/pull/1209

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.61...v2.62

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 11 months ago

PySDM - PySDM v2.61

What's Changed

• Numba JIT: set parallel=False for global defaults, and =True for backend defaults by @slayoo in https://github.com/open-atmos/PySDM/pull/1336
• Bump pypartmc from 1.3.0 to 1.3.1 by @dependabot in https://github.com/open-atmos/PySDM/pull/1335

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.60...v2.61

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 11 months ago

PySDM - PySDM v2.60

What's Changed

• bump checkout action version by @slayoo in https://github.com/open-atmos/PySDM/pull/1334
• spatial sampling: option to limit sampling along X-direction to a given range by @jtbuch in https://github.com/open-atmos/PySDM/pull/1316
• Numba backend cached property refactor (tests may compile slower since JIT cache is now local to backend instance) by @slayoo in https://github.com/open-atmos/PySDM/pull/1299

New Contributors

• @jtbuch made their first contribution in https://github.com/open-atmos/PySDM/pull/1316

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.59...v2.60

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 11 months ago

PySDM - PySDM v2.59

What's Changed

• adhere to matplotlib deprecations & bump PyPartMC CI version requirement by @slayoo in https://github.com/open-atmos/PySDM/pull/1327
• move Gedzelman & Arnold zero-dR-condition from example notebook into PySDM/physics (i.e., Formulae) by @slayoo in https://github.com/open-atmos/PySDM/pull/1326
• enable codecov logic for all builds, not only merge commits by @slayoo in https://github.com/open-atmos/PySDM/pull/1332
• Bump pypartmc from 1.2.1 to 1.3.0 by @dependabot in https://github.com/open-atmos/PySDM/pull/1330
• isotope notebooks update (plot label fix + plot regen) by @slayoo in https://github.com/open-atmos/PySDM/pull/1333

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.58...v2.59

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 11 months ago

PySDM - PySDM v2.58

What's Changed

• fix CI cache (which blocked release uploads to PyPI) & remove prange call from non-jit function in chemistry methods. closes #1298 by @slayoo in https://github.com/open-atmos/PySDM/pull/1323

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.57...v2.58

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 12 months ago

PySDM - PySDM v2.57

What's Changed

• workaround build-time dependency conflict with pyvinecopulib by @slayoo in https://github.com/open-atmos/PySDM/pull/1325

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.56...v2.57

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 12 months ago

PySDM - PySDM v2.56

What's Changed

• workarounding pyvinecopulib setuptools build-time dependency conflict by @slayoo in https://github.com/open-atmos/PySDM/pull/1324

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.55...v2.56

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 12 months ago

PySDM - PySDM v2.55

What's Changed

• surface precip product compatibility in S&H example and netCDF exporter + fix in CI examples-setup editable install by @slayoo in https://github.com/open-atmos/PySDM/pull/1322

Thanks to @crocicc for spotting reporting the issue!

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.54...v2.55

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 12 months ago

PySDM - PySDM v2.54

What's Changed

• new examples & smoke tests (isotopes, no env.):
  • Gedzelman & Arnold 1994 fig 2 (fractionation upon evaporation in below-cloud subsaturated conditions)
  • Miyake et al. 1968 fig 19 (isotopic relaxation timescale)
• formulae:
  • isotope diffusivity ratios (Graham's law; Stewart 1975; Hellmann & Harvey)
  • isotope relaxation timescales (Miyake)
  • access to RogersYau terminal vel. from Formulae
  • refactor around Null classes (removal of all but one null.py files)
• new ventilation test based on Kinzer & Gunn 1951 table 1

details: https://github.com/open-atmos/PySDM/pull/1307

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.53...v2.54

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo 12 months ago

PySDM - PySDM v2.53

What's Changed

• Bump pypartmc from 1.1.4 to 1.2.0 by @dependabot in https://github.com/open-atmos/PySDM/pull/1317
• improve Lognormal docstring + add unit tests by @slayoo in https://github.com/open-atmos/PySDM/pull/1319
• add Mason's approximated drop growth formula in the very form given in the 1951 paper (without the -1 term) + unit test by @slayoo in https://github.com/open-atmos/PySDM/pull/1320

Thanks @crocicc for feedback!

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.52...v2.53

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 1 year ago

PySDM - PySDM v2.52

What's Changed

• Jensen & Nugent 2017 example updates (incl. new smoke tests, Fig 7, 8 and Tab 4 notebooks); GrabowskiEtAl2011 diffusion thermics coefficient fix; Bolton1980 & Wexler1976 svp formulae; by @bhiogade in https://github.com/open-atmos/PySDM/pull/1283

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.51...v2.52

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 1 year ago

PySDM - v2.51

What's Changed

• split unit tests, parcel smoke tests and multi-process/condensation examples into multiple jobs to reduce CI time; introduce pip cache for examples jobs by @slayoo in https://github.com/open-atmos/PySDM/pull/1315
• add macOS (incl. amd64) and Windows readme code CI checks by @slayoo in https://github.com/open-atmos/PySDM/pull/1306

pip cache logic based on analogous solution prepared by @Delcior for PyMPDATA-MPI - thanks!

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.50...v2.51

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 1 year ago

PySDM - PySDM v2.50

What's Changed

• Bump pypartmc from 1.1.3 to 1.1.4 by @dependabot in https://github.com/open-atmos/PySDM/pull/1311
• reduce boilerplate code in physics by introducing plus-separated Formulae ctor args by @slayoo in https://github.com/open-atmos/PySDM/pull/1314

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.49...v2.50

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 1 year ago

PySDM - PySDM v2.49

What's Changed

• normalisation by dv and by zero-th moment as option in make_arbitrary_moment_product by @slayoo in https://github.com/open-atmos/PySDM/pull/1308

Thanks @crocicc for suggesting it and for the review!

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.48...v2.49

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 1 year ago

PySDM - PySDM v2.48

What's Changed

• remove references to constants_defaults from the README snippets (+ add Formulae::get_constant()) closes #1243 by @slayoo in https://github.com/open-atmos/PySDM/pull/1269
• switch from empty to full(nan) in FakeThrust Storage and from full(-1) to full(NaN) in Numba to help spotting on CI cases of uninitialised memory access by @slayoo in https://github.com/open-atmos/PySDM/pull/1201
• ensure no NaNs are used in parcel env initialisation. closes #1198 by @slayoo in https://github.com/open-atmos/PySDM/pull/1301
• bump devops tests by @slayoo in https://github.com/open-atmos/PySDM/pull/1304
• Bump pypartmc from 1.1.2 to 1.1.3 by @dependabot in https://github.com/open-atmos/PySDM/pull/1305
• fix Mv constant calc (D and T abundances count twice in water molecular abundances); share initial parameters across J&N and Yang examples by @slayoo in https://github.com/open-atmos/PySDM/pull/1258

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.47...v2.48

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 1 year ago

PySDM - PySDM v2.47

What's Changed

• bump actions versions to avoid Node.js warnings by @slayoo in https://github.com/open-atmos/PySDM/pull/1293
• speeding up the parcel-noisy-supersaturation test (slowest unit test to date) + cleanups by @slayoo in https://github.com/open-atmos/PySDM/pull/1296
• add ventilation coefficient (Pruppacher & Rasmussen 1979 & Froessling 1938) + Reynolds number attr + air dynamic viscosity formulae + unit tests (incl. drop size changes upon ventilation-in-parcel-below-cloud vs. no-ventilation) + refactor of env vars __getitem__ logic by @kaitlyn-loftus in https://github.com/open-atmos/PySDM/pull/1282

New Contributors

• @kaitlyn-loftus made their first contribution in https://github.com/open-atmos/PySDM/pull/1282

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.46...v2.47

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 1 year ago

PySDM - PySDM v2.46

What's Changed

• add Colab headers to J&N notebooks + some plotting code additions by @slayoo in https://github.com/open-atmos/PySDM/pull/1280
• test_efficiencies refactor for speedup (was taking 10 min. of CI unit test runs) by @slayoo in https://github.com/open-atmos/PySDM/pull/1290
• print top 10 test durations on Appveyor by @slayoo in https://github.com/open-atmos/PySDM/pull/1289
• Bump pypartmc from 1.1.0 to 1.1.2 by @dependabot in https://github.com/open-atmos/PySDM/pull/1286
• add --no-warn-script-location option for pip on Appveyor CI to avoid lots of unrelated warnings by @slayoo in https://github.com/open-atmos/PySDM/pull/1292
• introducing Formulae::flatten and leveraging it in a Numba condensation methods refactor: >100 LoC less (in preparation for introducing ventilation) by @slayoo in https://github.com/open-atmos/PySDM/pull/1291

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.45...v2.46

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 1 year ago

PySDM - PySDM v2.45

What's Changed

• Jensen & Nugent 2017 GCCN example: Figs 1, 3, 4, 5 & 6 (incl. Grabowski et al. diffusion thermics) by @bhiogade in https://github.com/open-atmos/PySDM/pull/1267

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.44...v2.45

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 1 year ago

PySDM - PySDM v2.44

What's Changed

• coalescence-only single-column test case ("deJong_Azimi" based on S&H); power-law terminal velocity; initialisation of particles in part of the domain in 1D kinematic env by @edejong-caltech in https://github.com/open-atmos/PySDM/pull/1221
• move parcel displacement product to parcel subfolder by @slayoo in https://github.com/open-atmos/PySDM/pull/1278
• Bump pypartmc from 1.0.3 to 1.1.0 by @dependabot in https://github.com/open-atmos/PySDM/pull/1277

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.43...v2.44

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 1 year ago

PySDM - PySDM v2.43

What's Changed

• Lowe et al. 2019 Fig S2 (+smoke tests); new optical formulae and products (optical depth & albedo); LWP product; activation-filtered r_eff product; cleanups by @claresinger in https://github.com/open-atmos/PySDM/pull/1256
• speeding up Appveyor 32bit unit test runs by avoiding multiple pkg downloads thanks to pinned versions of dependencies by @slayoo in https://github.com/open-atmos/PySDM/pull/1276

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.42...v2.43

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 1 year ago

PySDM - PySDM v2.42

What's Changed

• adding new isotope equil. fractionation factor formulae for ice-vap 2H (LambEtAl2017, EllehojEtAl2013) + new example notebook (Fig. 4 from Lamb et al. 2017, PNAS) by @slayoo in https://github.com/open-atmos/PySDM/pull/1271
• instruct dependabot to also check PySDM-examples dependencies. closes #1224 by @slayoo in https://github.com/open-atmos/PySDM/pull/1270
• Bump pypartmc from 1.0.2 to 1.0.3 by @dependabot in https://github.com/open-atmos/PySDM/pull/1268

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.41...v2.42

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 1 year ago

PySDM - PySDM v2.41

What's Changed

• add libgl1 to .binder/apt.txt to workaround vtk missing shared lib issue. hopefully closes #1230 by @slayoo in https://github.com/open-atmos/PySDM/pull/1245
• fix Colab package install header in collision tutorial by @slayoo in https://github.com/open-atmos/PySDM/pull/1244
• new issue numbers and documentation of failed tests by @claresinger in https://github.com/open-atmos/PySDM/pull/1248
• CI: bump upper Python version to 3.11 (and address numerous deprecation warnings from dependencies) by @slayoo in https://github.com/open-atmos/PySDM/pull/1235
• code formatting changes to comply with black v24.1 by @slayoo in https://github.com/open-atmos/PySDM/pull/1257
• install pyrcel for ci and extend smoke-test timeout by @claresinger in https://github.com/open-atmos/PySDM/pull/1253
• add mention of CLEO to the README by @slayoo in https://github.com/open-atmos/PySDM/pull/1260
• Adding Missing View-Notebook badge; fix myBinder URL; fix CI version constraint logic by @bhiogade in https://github.com/open-atmos/PySDM/pull/1261
• Bump pypartmc from 1.0.1 to 1.0.2 by @dependabot in https://github.com/open-atmos/PySDM/pull/1263
• Missing urls and Badge by @bhiogade in https://github.com/open-atmos/PySDM/pull/1264
• freezing: convergence analysis notebook update; adding typical output file extensions to .gitignore by @slayoo in https://github.com/open-atmos/PySDM/pull/1137

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.40...v2.41

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 1 year ago

PySDM - PySDM v2.40

What's Changed

• new README file for tutorials (+ removal of leftover __init__.py files) by @claresinger in https://github.com/open-atmos/PySDM/pull/1242
• ARG example fix (ensuring water_molar_volume in kappa() is consistent with formulae constants) + smoke tests; analogous changes in other examples using dry aerosol initialisation logic by @claresinger in https://github.com/open-atmos/PySDM/pull/1226

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.39...v2.40

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo over 1 year ago

PySDM - PySDM v2.39

What's Changed

• Table 1 notebook for the Graf example + smoke test + cleanup in isotopic fractionation formulae by @bhiogade in https://github.com/open-atmos/PySDM/pull/1239
• README updates by @slayoo in https://github.com/open-atmos/PySDM/pull/1241

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.38...v2.39

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo over 1 year ago

PySDM - PySDM v2.38

What's Changed

• Graf et al. 2019 Fig 4 example draft (parcel, condensation, isotopes) including the move of reusable notebook_vars() into PySDM_examples/utils by @bhiogade in https://github.com/open-atmos/PySDM/pull/1222
• fixing whitespace issue (pre-commit) that preveted pypi upload of the previous release by @slayoo in https://github.com/open-atmos/PySDM/pull/1232

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.37...v2.37.1

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo over 1 year ago

PySDM - PySDM v2.37

What's Changed

• link to tutorials within README.md; fix badge urls; fix mybinder init logic (.binder/postBuild script that now deletes everything but examples and tutorials folders) by @bhiogade in https://github.com/open-atmos/PySDM/pull/1228
• Add a test that checks parcel equilibrium supersaturation does not depend on dz by @claresinger in https://github.com/open-atmos/PySDM/pull/1225

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.36...v2.37

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo over 1 year ago

PySDM - PySDM v2.36

What's Changed

• introducing PySDM tutorials with first two based on collision and condensation classroom notebooks by @claresinger in https://github.com/open-atmos/PySDM/pull/1164

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.35...v2.36

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo over 1 year ago

PySDM - PySDM v2.35

What's Changed

• add render-on-github badge to Kreidenweis example notebook by @bhiogade in https://github.com/open-atmos/PySDM/pull/1210
• clarify notebook execution commands by @slayoo in https://github.com/open-atmos/PySDM/pull/1211
• replace nbviewer badge with render-on-github for Merlivat & Nief 1967 example by @bhiogade in https://github.com/open-atmos/PySDM/pull/1213
• update package metadata (urls changes reflecting the move of PySDM-examples into the PySDM repo) by @bhiogade in https://github.com/open-atmos/PySDM/pull/1215
• Add render-on-github badge and fix my binder link by @bhiogade in https://github.com/open-atmos/PySDM/pull/1214
• improve SimpleGeometric kernel docstring by @bhiogade in https://github.com/open-atmos/PySDM/pull/1223

New Contributors

• @bhiogade made their first contribution in https://github.com/open-atmos/PySDM/pull/1210

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.34...v2.35

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by bhiogade over 1 year ago

PySDM - PySDM v2.34

What's Changed

• stable water isotopologues:

  • new base attributes: Moles1H, Moles16O, MolesLightWater + havy isotopes via make_mole_amount_factory (previously developed for Hoppel gap)
  • new derived attributes: isotopic deltas (via new make_delta_factory)
  • backend isotope methods: isotopic_delta via physics.trivia (both CPU and GPU)
  • sketch of IsotopicFractionation dynamic (attribite dependencies, trigerring delta calculation)
  • VSMOW constants
  • isotope-related physics formulae:
    • isotope_equilibrium_fractionation_factors: BarkanAndLuz2005 (Oxygen 17, liquid), HoritaAndWesolowski1994 (Oxygen 18 and Deuterium, liquid), Majoube1970 (Oxygen 18, ice), Majoube1971 (Oxygen 18, liquid), MerlivatAndNief1967 (Deuterium, liquid & ice), VanHook1968 (D, T, O18, O17; liquid & ice)
    • isotope_meteoric_water_line_excess: Dansgaard1964 (Oxygen 18 vs. Deuterium), BarkanAndLuz2007 (Oxygen 17 vs. Oxygen 18); Craig 1961 Fig 1 and Barkan & Luz 2007 Fig 4 unit tests
    • isotope_ratio_evolution: MerlivatAndJouzel1979 (differential), RayleighDistillation (integral) + test checking when these two match
  • trivia formulae: isotopic_delta_2_ratio, isotopic_ratio_2_delta, isotopic_enrichment_to_delta_SMOW, mixing_ratio_to_specific_content
  • new examples (all environment-free, depicting formulae):
    • Bolot_et_al_2013: Fig 1 (incl. unit tests)
    • Merlivat_and_Nief_1967: Fig 2 (incl. unit tests)
    • Pierchala_et_al_2022: Fig 3 & 4 (incl. smoke tests)
    • Van_Hook_1968: Fig 1

• formulae machinery:

  • constants_defaults: all calculations logic moved to compute_derived_values function called from Formulae ctor
  • PPM, PER_CENT, PER_MEG, PER_MILLE
  • dry-air molar mass derived from NIST N2, O2, Ar and C composition ratios
  • water molar mass derived from VSMOW isotopic ratios

• CI:

  • run git diff on pre-commit jpb failure
  • bump pypartmc from 1.0.0 to 1.0.1 by @dependabot in https://github.com/open-atmos/PySDM/pull/1204
  • cleanup precommit workflow (https://github.com/open-atmos/PySDM/pull/1205)

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.33...v2.34

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo over 1 year ago

PySDM - PySDM v2.33

What's Changed

• Bump pypartmc from 0.7.1 to 0.9.5 by @dependabot in https://github.com/open-atmos/PySDM/pull/1195
• rename test_coalescence into test_lwc_constant + switch from returns to pytest.skip() by @slayoo in https://github.com/open-atmos/PySDM/pull/1192
• Bump pypartmc from 0.9.5 to 1.0.0 by @dependabot in https://github.com/open-atmos/PySDM/pull/1202
• Pass environment to Builder constructor by @abulenok in https://github.com/open-atmos/PySDM/pull/1178

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.32...v2.33

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo over 1 year ago

PySDM - PySDM v2.32

What's Changed

• Bump pypartmc from 0.6.4 to 0.7.1 by @dependabot in https://github.com/open-atmos/PySDM/pull/1186
• sort out pkg_resources deprecation using importlib.metadata (requires Python 3.8) by @slayoo in https://github.com/open-atmos/PySDM/pull/1194
• split packaging and publishing into separate jobs; enforce setuptools[-scm] versions that work by @slayoo in https://github.com/open-atmos/PySDM/pull/1199

Full Changelog: https://github.com/open-atmos/PySDM/compare/v2.31...v2.32

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo over 1 year ago

PySDM - PySDM v2.31

• added argument-range checks for GunnKinzer1949 interpolation of terminal velocities (thanks @bradybhalla for reporting and identifying the issue, thanks @abulenok for providing the fix)
• failing Particulator instantiation if user supplies values for a derived attribute
• simplifcations/cleanups in dry_volume & acidity attributes code
• disabling multi-threading on arm64 until we have a fix for atomic operations (thanks @jtbuch and @pb475 for reporting the problem and help with debugging it!)

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo over 1 year ago

PySDM - PySDM v2.30

• mass instead of volume as base attribute (incl. introduction of physics.particle_shape_and_density) #1147
• new cases for test_attribute_update_single_breakup (#1158)
• compatibility fixes for newer versions of setuptools_scm
• docstring cleanups

thanks @abulenok, @AgnieszkaMakulska & @Delcior

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo over 1 year ago

PySDM - PySDM v2.29

• added CPU vs. GPU performance comparison for the Srivastava_1978 setup
• removed spurious index copying in attributes

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by abulenok over 1 year ago

PySDM - PySDM v2.28

• refactor in GPU backend using @cached_property instead of lengthy ctors in methods classes (results in a lazy evaluation bonus)
• dropping support for Python 3.7 (due to @cached_property, and in line with 3.7 end of life)
• C code syntax fixes & cleanups in GPU backend
• atomicAdd workaround for double precision type on older CUDA (#1138)

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo over 1 year ago

PySDM - PySDM v2.27

• option to use a non-constant timescale in the relaxed velocity dynamic (#1114) - @bradybhalla

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo over 1 year ago

PySDM - PySDM v2.26

• breakup function renaming withing backend code (#1126) - @abulenok
• phasing out "q" var naming in favour of "water_vapour_mixing_ratio", etc (#1131)
• updates to the Grabowski & Pawlowska 2023 example: condensation tolerance, ripening rate (#1129) - @AgnieszkaMakulska
• cleaning up code that triggered redefined-outer-name pylint warning in pytest fixtures and notebook-embedded function definitions (#1133)
• ensuring all classes are accessible after importing only the main PySDM package (#1135)

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo over 1 year ago

PySDM - PySDM v2.25

• new example notebooks and smoke tests covering complete set of figures from Grabowski & Pawlowska 2023
• new product base class: _ActivationFilteredProduct
• new products based on the above: ActivatedParticleConcentration, ActivatedParticleSpecificConcentration, ActivatedMeanRadius
• new size-spectral products: MeanVolumeRadius, AreaStandardDeviation, RadiusStandardDeviation, VolumeStandardDeviation
• new attribute: EquilibriumSupersaturation
• cleanups in Yang_et_al_2018 example (incl. using the above new products instead of manually computing the activation-filtered quantities)

kudos @AgnieszkaMakulska!

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo over 1 year ago

PySDM - PySDM v2.24

• switching from "n" to "multiplicity" for attribute key (#1123)
• improving reporting of filenames in pytest example test suites (#1121)

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo over 1 year ago

PySDM - PySDM v2.23

• linear (instead of constant) density/pressure profile for condensation in parcel environment (kudos @mikhailmints)
• updates in immersion freezing example to match arXiv-uploaded figures
• using the CI env var to trigger FakeThrust (thus making it easier to locally reproduce CI behaviour)
• renumbered figured in de Jong et al. breakup example to match final paper
• new tests (codecov now reports 80%!), code cleanups

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo over 1 year ago

PySDM - PySDM v2.22

• RelaxedVelocity dynamic (allowing for relaxation to terminal speeds) and relative fall velocity attribute refactor
• mermaid diagrams in README depicting PySDM submodule organisation and what's being passed where in the hello-world example

thanks to @bradybhalla and @edejong-caltech!

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo almost 2 years ago

PySDM - PySDM v2.21

• PySDM-examples repo contents moved into PySDM repo (retaining separate PyPI packages)
• introducing test suites to shorten time-to-completion of CI runs
• switching from BDF to LSODA SciPy solver for condensation tests
• speeding up super-droplet count product
• using devops_tests in CI to share common test code across open-atmos projects
• more test cases added for test_n_breakups
• clarified literature references (incl. class dependency structure) in latent heat, diffusion kinetics and diffusion thermics formulae

thanks @claresinger, @abulenok and @AgnieszkaMakulska for contributions, reviews and issue reports.

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo almost 2 years ago

PySDM - PySDM v2.20

• updated multi-step breakup algorithm (kudos @abulenok & @edejong-caltech)

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by edejong-caltech about 2 years ago

PySDM - PySDM v2.19

• Fixes to Straub fragmentation function and sampling methods
• addition of (draft of) LowList1982 fragmentation function and coalescence efficiency

kudos @edejong-caltech, thanks @abulenok for reviews and help!

Atmosphere - Atmospheric Chemistry and Aerosol - Python
Published by slayoo about 2 years ago