NicheMapR
Modelling the thermodynamic constraints on life.
https://github.com/mrke/nichemapr
Category: Biosphere
Sub Category: Ecological and Environmental Modeling
Last synced: about 18 hours ago
JSON representation
Repository metadata
R implementation of Niche Mapper software for biophysical modelling
- Host: GitHub
- URL: https://github.com/mrke/nichemapr
- Owner: mrke
- License: gpl-3.0
- Created: 2015-11-06T00:49:03.000Z (over 9 years ago)
- Default Branch: master
- Last Pushed: 2025-04-22T00:45:58.000Z (6 days ago)
- Last Synced: 2025-04-25T14:07:14.539Z (3 days ago)
- Language: R
- Size: 38 MB
- Stars: 69
- Watchers: 16
- Forks: 34
- Open Issues: 0
- Releases: 12
-
Metadata Files:
- Readme: README.md
- License: License.txt
README.md
NicheMapR
R implementation of Niche Mapper software for biophysical modelling
Copyright (C) 2018 Michael R. Kearney and Warren P. Porter
Installation from github:
library(devtools)
install_github('mrke/NicheMapR')
See also https://mrke.github.io/getting_started/
Citations:
Kearney, M. R., & Porter, W. P. (2017).
NicheMapR - an R package for biophysical modelling: The microclimate model.
Ecography, 40(5), 664–674.
https://doi.org/10.1111/ecog.02360
Kearney, M. R., & Porter, W. P. (2020).
NicheMapR – an R package for biophysical modelling: The ectotherm and Dynamic Energy Budget models.
Ecography, 43(1), 85–96.
https://doi.org/10.1111/ecog.04680
Kearney, M. R., Briscoe, N. J., Mathewson, P. D., & Porter, W. P. (2021).
NicheMapR – an R package for biophysical modelling: The endotherm model.
Ecography, 44(11), 1595–1605.
https://doi.org/10.1111/ecog.05550
Kearney, M. R., Porter, W. P., & Huey, R. B. (2021).
Modelling the joint effects of body size and microclimate on heat budgets and foraging opportunities of ectotherms.
Methods in Ecology and Evolution, 12(13), 458–467.
https://doi.org/10.1111/2041-210X.13528
Kearney, M. R., and Enriquez-Urzelai, U. (2023). A general framework for jointly modelling thermal and hydric constraints on developing eggs. Methods in Ecology and Evolution, 14(2), 583–595.
https://doi.org/10.1111/2041-210X.14018
Kearney, M. R., and Leigh, A. (2024).
Fast, accurate and accessible calculations of leaf temperature and its physiological consequences with NicheMapR. Methods in Ecology and Evolution, 15(9), 1516-1531.
https://doi.org/10.1111/2041-210X.14373
This program is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see http://www.gnu.org/licenses/.
Owner metadata
- Name: Michael Kearney
- Login: mrke
- Email:
- Kind: user
- Description:
- Website: https://michaelkearneyresearch.wordpress.com/
- Location: Melbourne, Australia
- Twitter:
- Company: The University of Melbourne
- Icon url: https://avatars.githubusercontent.com/u/8292924?u=b3c8c869347f049a94dbfbca1598bca7f9c2d94f&v=4
- Repositories: 24
- Last ynced at: 2024-11-02T06:53:36.693Z
- Profile URL: https://github.com/mrke
GitHub Events
Total
- Issues event: 4
- Watch event: 6
- Issue comment event: 9
- Push event: 44
- Pull request event: 2
- Fork event: 2
Last Year
- Issues event: 4
- Watch event: 6
- Issue comment event: 9
- Push event: 44
- Pull request event: 2
- Fork event: 2
Committers metadata
Last synced: 8 days ago
Total Commits: 1,425
Total Committers: 7
Avg Commits per committer: 203.571
Development Distribution Score (DDS): 0.011
Commits in past year: 99
Committers in past year: 1
Avg Commits per committer in past year: 99.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| mrke | m****e@u****u | 1409 |
| Rafael Schouten | r****n@g****m | 9 |
| Trollock | j****6@c****u | 3 |
| Traci P. DuBose | 3****y | 1 |
| Nick Golding | g****5@g****m | 1 |
| Ilya Maclean | i****n@e****k | 1 |
| Nicole Kearney | n****y@N****l | 1 |
Committer domains:
- exeter.ac.uk: 1
- cornell.edu: 1
- unimelb.edu.au: 1
Issue and Pull Request metadata
Last synced: 2 days ago
Total issues: 30
Total pull requests: 8
Average time to close issues: 5 months
Average time to close pull requests: 1 day
Total issue authors: 21
Total pull request authors: 5
Average comments per issue: 4.43
Average comments per pull request: 2.5
Merged pull request: 6
Bot issues: 0
Bot pull requests: 0
Past year issues: 3
Past year pull requests: 1
Past year average time to close issues: 3 months
Past year average time to close pull requests: about 5 hours
Past year issue authors: 3
Past year pull request authors: 1
Past year average comments per issue: 3.0
Past year average comments per pull request: 1.0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- dswethey (2)
- crg311 (2)
- mpinsky (2)
- plorch (2)
- everydayduffy (2)
- megbalk (2)
- dklinges9 (2)
- yjtw (2)
- fipoucat (2)
- I-Hickman (1)
- sfmatter (1)
- bonushenricus (1)
- aleixab (1)
- green-striped-gecko (1)
- zhengxy79 (1)
Top Pull Request Authors
- goldingn (2)
- rafaqz (2)
- ilyamaclean (2)
- aleixab (1)
- TraciPopejoy (1)
Top Issue Labels
Top Pull Request Labels
Dependencies
- R >= 3.5.0 depends
- RNetCDF * imports
- deSolve * imports
- ncdf4 * imports
- raster * imports
- Hmisc * suggests
- RNCEP * suggests
- devtools * suggests
- futile.logger * suggests
- geonames * suggests
- jpeg * suggests
- jsonlite * suggests
- knitr * suggests
- lattice * suggests
- mcera5 * suggests
- microclima * suggests
- plotrix * suggests
- png * suggests
- readr * suggests
- rmarkdown * suggests
- rutils * suggests
Score: 6.180016653652573