swell - 1.9.7

What's Changed

• Keep the order of YAML configurations within run tasks by @Dooruk in https://github.com/GEOS-ESM/swell/pull/485
• A draft for obs thinning by @metdyn in https://github.com/GEOS-ESM/swell/pull/482
• Platform for cascade lake nodes running sles15 by @mranst in https://github.com/GEOS-ESM/swell/pull/488
• Revise obs space localization for LETKF by @rtodling in https://github.com/GEOS-ESM/swell/pull/477
• Ability to run tier 2 tests locally by @mranst in https://github.com/GEOS-ESM/swell/pull/481
• Fix for SSMI/S-generating negative Jo by @rtodling in https://github.com/GEOS-ESM/swell/pull/460
• Adding EMC L3 SST, getting rid off obsolete observers by @Dooruk in https://github.com/GEOS-ESM/swell/pull/492
• Allow for assimilation of SWOT Nadir altimetry by @DavidSRussell in https://github.com/GEOS-ESM/swell/pull/494
• replace conversion and use of aircraft bias CSV files with convert/use of nc4 files to use with updated bias correction by @gmao-msienkie in https://github.com/GEOS-ESM/swell/pull/478
• Peg mksi to tag by @rtodling in https://github.com/GEOS-ESM/swell/pull/506
• Fix broken links in docs by @ashiklom in https://github.com/GEOS-ESM/swell/pull/500
• Upgrade modules to spack-stack 1.9, and update JEDI for February 6 by @mranst in https://github.com/GEOS-ESM/swell/pull/504
• Swell logger extends logging.Logger by @mranst in https://github.com/GEOS-ESM/swell/pull/450
• Fixed bug where models in override.yaml would overwrite tier1 defaults by @mranst in https://github.com/GEOS-ESM/swell/pull/511
• Reviving 3dvar_cycle and 3dfgat_cycle suite defaults by @Dooruk in https://github.com/GEOS-ESM/swell/pull/512
• AVHRR - as all IR - needs all surf types in linear model by @rtodling in https://github.com/GEOS-ESM/swell/pull/468
• Add perhost opt for mpi execs by @rtodling in https://github.com/GEOS-ESM/swell/pull/517
• Multiple fixes, save_restart, abandon sles12, another example in the documentation by @Dooruk in https://github.com/GEOS-ESM/swell/pull/516

New Contributors

• @DavidSRussell made their first contribution in https://github.com/GEOS-ESM/swell/pull/494

Full Changelog: https://github.com/GEOS-ESM/swell/compare/1.9.6...1.9.7

Climate Change - Earth and Climate Modeling - Python
Published by Dooruk about 1 month ago

swell - 1.9.6

What's Changed

• Update CODEOWNERS by @mathomp4 in https://github.com/GEOS-ESM/swell/pull/398
• Parsing ozinfo.db from GEOS_mksi and removing old observing system yamls by @asewnath in https://github.com/GEOS-ESM/swell/pull/396
• no Datetime class without datetime by @Dooruk in https://github.com/GEOS-ESM/swell/pull/403
• Add task to calculate ensemble mean and variance from background state by @metdyn in https://github.com/GEOS-ESM/swell/pull/397
• Add to docs a procedure note on code_tests by @metdyn in https://github.com/GEOS-ESM/swell/pull/402
• CLI for Tier 1 tests by @ashiklom in https://github.com/GEOS-ESM/swell/pull/408
• Add command line option to set LOG_INFO in code_tests.py by @metdyn in https://github.com/GEOS-ESM/swell/pull/412
• Get background geos exp not catching dev/null by @ashiklom in https://github.com/GEOS-ESM/swell/pull/410
• Error reporting for empty channel lists by @asewnath in https://github.com/GEOS-ESM/swell/pull/414
• LocalEnsembleDA: use_linear_observer in GETKF by @metdyn in https://github.com/GEOS-ESM/swell/pull/413
• Type hinting and misc changes by @mranst in https://github.com/GEOS-ESM/swell/pull/417
• Pinned versions utilities and abort suppression by @asewnath in https://github.com/GEOS-ESM/swell/pull/429
• Updates for the SOCA config for updating pinned JEDI build by @Dooruk in https://github.com/GEOS-ESM/swell/pull/430
• Remove hardcoded /tmp from code_tests, and fix GEOS_mksi test by @ashiklom in https://github.com/GEOS-ESM/swell/pull/436
• Cycling FGAT for geos_marine and towards erasing geos_ocean by @Dooruk in https://github.com/GEOS-ESM/swell/pull/419
• Using Pinned Hashes for JEDI Repositories by @asewnath in https://github.com/GEOS-ESM/swell/pull/433
• Adding Instructions on how to use uv and venv for Swell installation by @Dooruk in https://github.com/GEOS-ESM/swell/pull/446
• Add hydrometeors by @rtodling in https://github.com/GEOS-ESM/swell/pull/422
• Missing optional parameters in experiment.yaml for 3dfgat_cycle by @mranst in https://github.com/GEOS-ESM/swell/pull/448
• LGETKF: add function to tune horizontal localization for each observer by @metdyn in https://github.com/GEOS-ESM/swell/pull/437
• Oct 2024 Variable Change Sprint by @rtodling in https://github.com/GEOS-ESM/swell/pull/457
• Add missing surface type to linear obs op of MW by @rtodling in https://github.com/GEOS-ESM/swell/pull/463
• Set tropopause pressure opt consistent w/ GSI by @rtodling in https://github.com/GEOS-ESM/swell/pull/464
• Introducing GMAO ODAS obs sources by @Dooruk in https://github.com/GEOS-ESM/swell/pull/444

New Contributors

• @mranst made their first contribution in https://github.com/GEOS-ESM/swell/pull/417

Full Changelog: https://github.com/GEOS-ESM/swell/compare/1.9.5...1.9.6

Climate Change - Earth and Climate Modeling - Python
Published by Dooruk 5 months ago

swell - 1.9.5

What's Changed

• Added useflag checks for AMSR2 and GMI channels. by @gmao-jjin3 in https://github.com/GEOS-ESM/swell/pull/326
• Re-instate hofx scaling in observation operators. by @gmao-jjin3 in https://github.com/GEOS-ESM/swell/pull/328
• use-flag cannot be wired; comes from satdb by @rtodling in https://github.com/GEOS-ESM/swell/pull/331
• Updated OMI_AURA and OMPS_NPP observational errors and QC. by @gmao-jjin3 in https://github.com/GEOS-ESM/swell/pull/332
• Sync w/ latest JEDI - Apr 5th 2024 by @rtodling in https://github.com/GEOS-ESM/swell/pull/333
• Feature/jedi var bc sprint update by @gmao-jjin3 in https://github.com/GEOS-ESM/swell/pull/338
• Flexible SLURM configuration by @ashiklom in https://github.com/GEOS-ESM/swell/pull/339
• Soca increment plots using eva by @asewnath in https://github.com/GEOS-ESM/swell/pull/346
• add co2 to atmos background by @rtodling in https://github.com/GEOS-ESM/swell/pull/348
• Refactor SLURM user global defaults for test by @ashiklom in https://github.com/GEOS-ESM/swell/pull/352
• Refactor prep config by @Dooruk in https://github.com/GEOS-ESM/swell/pull/336
• Use GEOS Experiment Backgrounds by @Dooruk in https://github.com/GEOS-ESM/swell/pull/350
• Migrate docs into main repository tree by @ashiklom in https://github.com/GEOS-ESM/swell/pull/358
• requirements update for numpy by @Dooruk in https://github.com/GEOS-ESM/swell/pull/364
• add spire obs by @rtodling in https://github.com/GEOS-ESM/swell/pull/367
• these were assimilating all channels by @rtodling in https://github.com/GEOS-ESM/swell/pull/366
• these add fractions to the analysis by @rtodling in https://github.com/GEOS-ESM/swell/pull/353
• Accidental incorrect merge ... fixed now by @rtodling in https://github.com/GEOS-ESM/swell/pull/373
• Remove co2 for now by @rtodling in https://github.com/GEOS-ESM/swell/pull/372
• Add SLES15 as a platform by @Dooruk in https://github.com/GEOS-ESM/swell/pull/354
• Add docs about editing docs by @ashiklom in https://github.com/GEOS-ESM/swell/pull/380
• Output from satbias covariance must come from different file by @rtodling in https://github.com/GEOS-ESM/swell/pull/381
• Add option to cycle VarBC by @Dooruk in https://github.com/GEOS-ESM/swell/pull/377
• Adding instructions for the SLES15 Installation by @Dooruk in https://github.com/GEOS-ESM/swell/pull/379
• Fix SLURM directive for atmosphere Var executable by @Dooruk in https://github.com/GEOS-ESM/swell/pull/384
• Add an EVA observational error comparison figure by @gmao-jjin3 in https://github.com/GEOS-ESM/swell/pull/386
• Swell Create CLI Bugfixes by @asewnath in https://github.com/GEOS-ESM/swell/pull/391
• Towards WCDA: Introduce geos_marine, keep geos_ocean by @Dooruk in https://github.com/GEOS-ESM/swell/pull/370
• Add comparisons between JEDI and GSI Hofx and obs errors passed GSI QC. by @gmao-jjin3 in https://github.com/GEOS-ESM/swell/pull/393
• FMS 2023.04 change and using relative paths in config by @Dooruk in https://github.com/GEOS-ESM/swell/pull/395

New Contributors

• @ashiklom made their first contribution in https://github.com/GEOS-ESM/swell/pull/339

Full Changelog: https://github.com/GEOS-ESM/swell/compare/1.9.0...1.9.5

Climate Change - Earth and Climate Modeling - Python
Published by Dooruk 9 months ago

swell - 1.9.0

Main Changes:

• Introducing Atmospheric 3DVAR and 3DFGAT suites
• Introducing LETKF tasks for the ensemble_hofx handling
• Improving observation operators (UFO changes)
• Switching Background error from BUMP to Explicit_Diffusion for the ocean
• Updating to Skylab 7 modules
• Improvements to EVA plots
• Improvements to the Questionary
• Lots of SWELL refactoring...

Full PR log:

• Update discover_nightly.yml by @jardizzo in https://github.com/GEOS-ESM/swell/pull/154
• Use skylake or cascade lake for the default nodes by @danholdaway in https://github.com/GEOS-ESM/swell/pull/155
• Use 3 hours for BuildJedi by @danholdaway in https://github.com/GEOS-ESM/swell/pull/157
• Use skylab 3 modules on Discover to maintain compatibility with JEDI by @danholdaway in https://github.com/GEOS-ESM/swell/pull/158
• Add workflow for building GEOS and populate relevant tasks by @danholdaway in https://github.com/GEOS-ESM/swell/pull/156
• Only use Cascade Lake nodes for the jobs so they can be synced to the… by @danholdaway in https://github.com/GEOS-ESM/swell/pull/159
• Fix channels without bc YAML by @danholdaway in https://github.com/GEOS-ESM/swell/pull/160
• Bump version of Eva to 1.3.4 by @danholdaway in https://github.com/GEOS-ESM/swell/pull/161
• Fix anchors in observation YAML files by @danholdaway in https://github.com/GEOS-ESM/swell/pull/164
• Feature/c idev by @jardizzo in https://github.com/GEOS-ESM/swell/pull/162
• Feature/logo by @danholdaway in https://github.com/GEOS-ESM/swell/pull/172
• Delete SwellLogo.psd by @danholdaway in https://github.com/GEOS-ESM/swell/pull/173
• Fix MarineVertInterp and update some modules to sky4 by @danholdaway in https://github.com/GEOS-ESM/swell/pull/176
• Add JEDI source and build paths to overridable keys by @danholdaway in https://github.com/GEOS-ESM/swell/pull/177
• Allow only explicit use of configuration by @danholdaway in https://github.com/GEOS-ESM/swell/pull/178
• Update README.md by @danholdaway in https://github.com/GEOS-ESM/swell/pull/179
• Run PR workflows also on push to develop by @danholdaway in https://github.com/GEOS-ESM/swell/pull/181
• Refactor the creation of config variables ahead of question implementation by @danholdaway in https://github.com/GEOS-ESM/swell/pull/182
• Use spack-stack 1.4 modules to maintain compatibility with JEDI by @danholdaway in https://github.com/GEOS-ESM/swell/pull/183
• Geos cycling tasks by @Dooruk in https://github.com/GEOS-ESM/swell/pull/184
• Fixes for the use of cycle_times in the suite preparation step by @danholdaway in https://github.com/GEOS-ESM/swell/pull/185
• Fixes to previously broken prep suite by @danholdaway in https://github.com/GEOS-ESM/swell/pull/188
• Rename Discover workflows by @danholdaway in https://github.com/GEOS-ESM/swell/pull/192
• bool exception by @Dooruk in https://github.com/GEOS-ESM/swell/pull/196
• Add new suite to run the UFO tests for the observation operator YAMLs by @danholdaway in https://github.com/GEOS-ESM/swell/pull/191
• Feature/jjin3/ufo tests x0048 assign error by @danholdaway in https://github.com/GEOS-ESM/swell/pull/204
• Feature/questions to tasks callum by @CRWayman in https://github.com/GEOS-ESM/swell/pull/189
• Put back the line that was removed by @danholdaway in https://github.com/GEOS-ESM/swell/pull/206
• Update the testing to be compatible with new nightly by @danholdaway in https://github.com/GEOS-ESM/swell/pull/207
• CI-Workflows uses main, not develop by @danholdaway in https://github.com/GEOS-ESM/swell/pull/209
• JEDI compatibility by @danholdaway in https://github.com/GEOS-ESM/swell/pull/214
• updating yamls for airs avhrr cris-fsr iasi ssmis by @gmao-wgu in https://github.com/GEOS-ESM/swell/pull/213
• make static bump generation possible again by @Dooruk in https://github.com/GEOS-ESM/swell/pull/212
• Turn on all the working ufo tests by @danholdaway in https://github.com/GEOS-ESM/swell/pull/216
• Adding advanced user options flag by @CRWayman in https://github.com/GEOS-ESM/swell/pull/220
• Prep for aircraft and surface. by @danholdaway in https://github.com/GEOS-ESM/swell/pull/221
• Modify aircraft.yaml to add 'offline' temperature bias correction by @gmao-msienkie in https://github.com/GEOS-ESM/swell/pull/208
• Turn on all observations in h(x) suite test by @danholdaway in https://github.com/GEOS-ESM/swell/pull/223
• Add PIBAL and bump satwind observations by one second by @danholdaway in https://github.com/GEOS-ESM/swell/pull/225
• Surface obs and bump time by one second by @danholdaway in https://github.com/GEOS-ESM/swell/pull/226
• Feautre/add geosadas test by @danholdaway in https://github.com/GEOS-ESM/swell/pull/227
• YAML unification by @danholdaway in https://github.com/GEOS-ESM/swell/pull/228
• Remove pibal specific processing in prep for iodaconv change by @danholdaway in https://github.com/GEOS-ESM/swell/pull/229
• Add sondes yaml and turn on in ufo testing by @danholdaway in https://github.com/GEOS-ESM/swell/pull/230
• Add LETKF suite and initial tasks. by @CEgerer93 in https://github.com/GEOS-ESM/swell/pull/232
• Add pibal YAML that gets match to GSI by @danholdaway in https://github.com/GEOS-ESM/swell/pull/231
• Add observation version controlling by @danholdaway in https://github.com/GEOS-ESM/swell/pull/242
• No bias correction for atms channel 15 in GEOS. by @gmao-jjin3 in https://github.com/GEOS-ESM/swell/pull/233
• Modifying geos-atmosphere yaml files by @asewnath in https://github.com/GEOS-ESM/swell/pull/234
• Set an ncdiag path in convert ncdiags setup by @danholdaway in https://github.com/GEOS-ESM/swell/pull/243
• Renaming test suite files and adding overrides to prep config softwar… by @CRWayman in https://github.com/GEOS-ESM/swell/pull/235
• Remove passive_bc option by @danholdaway in https://github.com/GEOS-ESM/swell/pull/247
• Add configuration for GPS data. by @gmao-jjin3 in https://github.com/GEOS-ESM/swell/pull/248
• Correct near surface wind scaling by @danholdaway in https://github.com/GEOS-ESM/swell/pull/244
• Adjust YAMLs ahead of UFO change by @danholdaway in https://github.com/GEOS-ESM/swell/pull/251
• Adjust some radiance counts for new UFO develop by @danholdaway in https://github.com/GEOS-ESM/swell/pull/253
• Move observational error assignments into 'obs prior filters'. by @gmao-jjin3 in https://github.com/GEOS-ESM/swell/pull/258
• Bring YAMLs up to date with new eva and parallelize the EvaObservation task by @danholdaway in https://github.com/GEOS-ESM/swell/pull/255
• IAU for MOM6 cycling runs by @Dooruk in https://github.com/GEOS-ESM/swell/pull/259
• Updated GEOS GNSSRO configuration. by @gmao-jjin3 in https://github.com/GEOS-ESM/swell/pull/257
• Single entry point for all applications and utilities by @danholdaway in https://github.com/GEOS-ESM/swell/pull/252
• Replace obs filters by obs prior and post filters. by @gmao-jjin3 in https://github.com/GEOS-ESM/swell/pull/262
• Change behaviour of the EvaObservations task on login vs compute node by @danholdaway in https://github.com/GEOS-ESM/swell/pull/263
• LETKF for single cycle by @CEgerer93 in https://github.com/GEOS-ESM/swell/pull/256
• Updates to JEDI bundle for new way the JEDI test repos are handled by @danholdaway in https://github.com/GEOS-ESM/swell/pull/267
• Pass platform to JEDI_BUNDLE for getting CRTM coeffs in place by @danholdaway in https://github.com/GEOS-ESM/swell/pull/269
• pass platform by @danholdaway in https://github.com/GEOS-ESM/swell/pull/270
• Remove the Yaml linting action by @danholdaway in https://github.com/GEOS-ESM/swell/pull/271
• Feature/single obs test by @gmao-jjin3 in https://github.com/GEOS-ESM/swell/pull/266
• Change interface to Radiance.toIODAobs by @danholdaway in https://github.com/GEOS-ESM/swell/pull/274
• add linear obs op by @danholdaway in https://github.com/GEOS-ESM/swell/pull/275
• Accessing GSI observing system records for active and available channels by @asewnath in https://github.com/GEOS-ESM/swell/pull/273
• Use the develop spack-stack with swell environment by @danholdaway in https://github.com/GEOS-ESM/swell/pull/281
• needed for Tskin analysis by @rtodling in https://github.com/GEOS-ESM/swell/pull/282
• Eva support for localensembleda by @CEgerer93 in https://github.com/GEOS-ESM/swell/pull/277
• combine subset observations & tier 1 3dvar_cycle testing by @Dooruk in https://github.com/GEOS-ESM/swell/pull/284
• Adding jinja templating to observation yamls for active/available channels by @asewnath in https://github.com/GEOS-ESM/swell/pull/278
• Add option to save geovals by @danholdaway in https://github.com/GEOS-ESM/swell/pull/283
• Addressing missing observations by @asewnath in https://github.com/GEOS-ESM/swell/pull/286
• Update modules and keep static files in shared locations by @Dooruk in https://github.com/GEOS-ESM/swell/pull/296
• Cloning GEOS_mksi instead for GSI channel records by @asewnath in https://github.com/GEOS-ESM/swell/pull/297
• Fix to check for missing obs in SaveObsDiag by @asewnath in https://github.com/GEOS-ESM/swell/pull/299
• Use EXPLICIT_DIFFUSION as Static Background for geos_marine by @Dooruk in https://github.com/GEOS-ESM/swell/pull/301
• Modifying Airs Aqua passed benchmark by @asewnath in https://github.com/GEOS-ESM/swell/pull/303
• Change Jedi Log plot and turn off Jb evaluation by @Dooruk in https://github.com/GEOS-ESM/swell/pull/310
• Towards ensemble hofx support by @CEgerer93 in https://github.com/GEOS-ESM/swell/pull/298
• Update to Skylab7 Modules - Part 1 (SLES12) by @Dooruk in https://github.com/GEOS-ESM/swell/pull/319
• Add atmospheric 3DVar and 3DFGAT cases by @rtodling in https://github.com/GEOS-ESM/swell/pull/302
• Resolve pandas warnings by @asewnath in https://github.com/GEOS-ESM/swell/pull/322

New Contributors

• @gmao-msienkie made their first contribution in https://github.com/GEOS-ESM/swell/pull/208
• @CEgerer93 made their first contribution in https://github.com/GEOS-ESM/swell/pull/232
• @rtodling made their first contribution in https://github.com/GEOS-ESM/swell/pull/282

Full Changelog: https://github.com/GEOS-ESM/swell/compare/1.2.0...1.9.0

Climate Change - Earth and Climate Modeling - Python
Published by Dooruk about 1 year ago

swell - 1.2.0

Climate Change - Earth and Climate Modeling - Python
Published by danholdaway about 2 years ago

swell - 1.1.0

Climate Change - Earth and Climate Modeling - Python
Published by danholdaway over 2 years ago

swell - 1.0.0

Climate Change - Earth and Climate Modeling - Python
Published by danholdaway about 3 years ago