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https://github.com/fulcrumgenomics/fgbio

Tools for working with genomic and high throughput sequencing data.
https://github.com/fulcrumgenomics/fgbio

Keywords

analyzing-genomic-data bioinformatics fgbio genomics molecular-indexes ngs scala umi

Keywords from Contributors

conda package-management dna sequencing gatk genome

Last synced: 11 months ago
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Acceptance Criteria

Repository metadata

Tools for working with genomic and high throughput sequencing data.

Owner metadata

Committers metadata

Last synced: over 1 year ago

Total Commits: 646
Total Committers: 17
Avg Commits per committer: 38.0
Development Distribution Score (DDS): 0.619

Commits in past year: 25
Committers in past year: 9
Avg Commits per committer in past year: 2.778
Development Distribution Score (DDS) in past year: 0.68

Name Email Commits
Tim Fennell t****e@t****m 246
Nils Homer n****r@g****m 178
Nils Homer n****3 167
Clint Valentine v****t@g****m 22
kstromhaug k****g@g****m 8
Michael Hipp m****p 7
Seth s****k@g****m 4
John McGuigan j****0@g****m 3
Jay Carey j****y@f****m 2
Jordi j****s@g****m 2
Brad Langhorst l****t@n****m 1
Chad Young w****d@g****m 1
Michael Hipp m****p@g****m 1
Nathan Roach n****h@g****m 1
Robert N. Azad 1****d 1
Peter Hickey p****y@g****m 1
Thomas Smith t****h@g****m 1

Committer domains:

Issue and Pull Request metadata

Last synced: 11 months ago

Total issues: 112
Total pull requests: 73
Average time to close issues: about 1 month
Average time to close pull requests: 27 days
Total issue authors: 71
Total pull request authors: 17
Average comments per issue: 3.1
Average comments per pull request: 1.67
Merged pull request: 52
Bot issues: 0
Bot pull requests: 0

Past year issues: 42
Past year pull requests: 38
Past year average time to close issues: 4 days
Past year average time to close pull requests: 5 days
Past year issue authors: 32
Past year pull request authors: 13
Past year average comments per issue: 1.93
Past year average comments per pull request: 1.68
Past year merged pull request: 29
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/fulcrumgenomics/fgbio

Top Issue Authors

  • nh13 (6)
  • eboyden (6)
  • gevro (5)
  • esamorodnitsky (4)
  • dstephensSD (4)
  • tobyaicher (4)
  • LeilyR (3)
  • shashwatsahay (3)
  • karlbeutner (3)
  • msto (3)
  • galaxy001 (2)
  • sofiapuvogelvittini (2)
  • teryyoung (2)
  • tfenne (2)
  • jrm5100 (2)

Top Pull Request Authors

  • nh13 (31)
  • clintval (10)
  • tfenne (10)
  • JoeVieira (3)
  • mjhipp (3)
  • jrm5100 (3)
  • yfarjoun (2)
  • kstromhaug (2)
  • TedBrookings (1)
  • jdidion (1)
  • bwlang (1)
  • galaxy001 (1)
  • ThomasHSmith (1)
  • PeteHaitch (1)
  • jacarey (1)

Top Issue Labels

  • question (46)
  • enhancement (12)
  • help wanted (8)
  • bug (5)

Top Pull Request Labels

  • needs review (4)
  • bug (2)
  • enhancement (1)

Package metadata

repo1.maven.org: com.fulcrumgenomics:fgbio_2.13

fgbio

  • Homepage: http://github.com/fulcrumgenomics/fgbio
  • Documentation: https://appdoc.app/artifact/com.fulcrumgenomics/fgbio_2.13/
  • Licenses: MIT License
  • Latest release: 2.2.1 (published over 1 year ago)
  • Last Synced: 2024-05-31T01:16:19.377Z (11 months ago)
  • Versions: 14
  • Dependent Packages: 1
  • Dependent Repositories: 0
  • Rankings:
    • Stargazers count: 15.015%
    • Forks count: 15.908%
    • Average: 23.725%
    • Dependent repos count: 31.98%
    • Dependent packages count: 31.998%
repo1.maven.org: com.fulcrumgenomics:fgbio_2.11

fgbio

  • Homepage: http://github.com/fulcrumgenomics/fgbio
  • Documentation: https://appdoc.app/artifact/com.fulcrumgenomics/fgbio_2.11/
  • Licenses: MIT License
  • Latest release: 0.8.1 (published about 6 years ago)
  • Last Synced: 2024-05-31T01:16:19.404Z (11 months ago)
  • Versions: 14
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Rankings:
    • Stargazers count: 15.015%
    • Forks count: 15.908%
    • Average: 27.941%
    • Dependent repos count: 31.98%
    • Dependent packages count: 48.86%
repo1.maven.org: com.fulcrumgenomics:fgbio_2.12

fgbio

  • Homepage: http://github.com/fulcrumgenomics/fgbio
  • Documentation: https://appdoc.app/artifact/com.fulcrumgenomics/fgbio_2.12/
  • Licenses: MIT License
  • Latest release: 1.3.1 (published almost 2 years ago)
  • Last Synced: 2024-05-31T01:16:19.696Z (11 months ago)
  • Versions: 16
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Rankings:
    • Stargazers count: 15.015%
    • Forks count: 15.908%
    • Average: 27.941%
    • Dependent repos count: 31.98%
    • Dependent packages count: 48.86%
formulae.brew.sh: fgbio

Tools for working with genomic and high throughput sequencing data

  • Homepage: https://fulcrumgenomics.github.io/fgbio/
  • Licenses: MIT
  • Latest release: 2.2.1 (published over 1 year ago)
  • Last Synced: 2024-05-31T01:16:19.357Z (11 months ago)
  • Versions: 4
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 48 Last month
  • Rankings:
    • Dependent packages count: 18.987%
    • Forks count: 23.013%
    • Stargazers count: 27.432%
    • Average: 42.44%
    • Dependent repos count: 50.731%
    • Downloads: 92.037%

Dependencies

.github/workflows/unittests.yaml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • codecov/codecov-action v3.1.0 composite
  • olafurpg/setup-scala v12 composite

Score: 12.781817655395468