https://github.com/cwieder/py-ssPA
Single sample pathway analysis tools for omics data
https://github.com/cwieder/py-ssPA
Keywords
bioinformatics identifier-mapping metabolomics omics pathway-analysis pathway-databases pathway-enrichment-analysis
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Single sample pathway analysis tools for omics data
- Host: GitHub
- URL: https://github.com/cwieder/py-ssPA
- Owner: cwieder
- License: gpl-3.0
- Created: 2021-12-28T11:47:36.000Z (over 3 years ago)
- Default Branch: main
- Last Pushed: 2024-03-27T13:53:44.000Z (about 1 year ago)
- Last Synced: 2024-06-06T15:50:56.629Z (11 months ago)
- Topics: bioinformatics, identifier-mapping, metabolomics, omics, pathway-analysis, pathway-databases, pathway-enrichment-analysis
- Language: Jupyter Notebook
- Homepage:
- Size: 8.05 MB
- Stars: 10
- Watchers: 2
- Forks: 4
- Open Issues: 0
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
Owner metadata
- Name: Cecilia Wieder
- Login: cwieder
- Email:
- Kind: user
- Description: Bioinformatics PhD candidate @ Imperial College London
- Website: https://www.imperial.ac.uk/people/cecilia.wieder19
- Location: London
- Twitter: cwieder_
- Company: Imperial College London
- Icon url: https://avatars.githubusercontent.com/u/59842155?u=83a35cd9d21e941c8b50754369b49b60637ce075&v=4
- Repositories: 12
- Last ynced at: 2023-08-01T01:36:13.703Z
- Profile URL: https://github.com/cwieder
GitHub Events
Total
- Release event: 3
- Watch event: 12
- Issue comment event: 2
- Public event: 2
- Push event: 216
- Pull request review event: 5
- Pull request review comment event: 2
- Pull request event: 6
- Fork event: 4
- Create event: 5
Last Year
- Create event: 1
- Fork event: 3
- Issue comment event: 2
- Pull request event: 6
- Pull request review comment event: 2
- Pull request review event: 5
- Push event: 68
- Release event: 1
- Watch event: 7
Committers metadata
Last synced: over 1 year ago
Total Commits: 196
Total Committers: 5
Avg Commits per committer: 39.2
Development Distribution Score (DDS): 0.051
Commits in past year: 47
Committers in past year: 4
Avg Commits per committer in past year: 11.75
Development Distribution Score (DDS) in past year: 0.17
| Name | Commits | |
|---|---|---|
| cwieder | c****9@g****m | 186 |
| Maelick | m****t@g****m | 3 |
| cwieder | c****9@i****k | 3 |
| cwieder | 5****r | 2 |
| mbrochut | 4****t | 2 |
Committer domains:
- ic.ac.uk: 1
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 0
Total pull requests: 3
Average time to close issues: N/A
Average time to close pull requests: 2 days
Total issue authors: 0
Total pull request authors: 1
Average comments per issue: 0
Average comments per pull request: 0.67
Merged pull request: 3
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 3
Past year average time to close issues: N/A
Past year average time to close pull requests: 2 days
Past year issue authors: 0
Past year pull request authors: 1
Past year average comments per issue: 0
Past year average comments per pull request: 0.67
Past year merged pull request: 3
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
Top Pull Request Authors
- mbrochut (3)
Top Issue Labels
Top Pull Request Labels
Dependencies
- numpy >=1.21.4
- pandas >=1.3.5
- requests >=2.26.0
- rpy2 >=3.4.5
- scikit-learn >=1.0.1
- scipy >=1.7.3
- setuptools >=58.0.4
- sspa >=0.1.0
- statsmodels >=0.13.1
- actions/checkout v3 composite
- actions/setup-python v4 composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- gseapy *
- numpy *
- pandas *
- requests *
- scikit-learn *
- scipy *
- setuptools *
- sspa *
- statsmodels *
Score: 3.9120230054281464