https://github.com/natir/yacrd

Yet Another Chimeric Read Detector
https://github.com/natir/yacrd

Keywords

bioinformatics chimera long-reads sequence

Keywords from Contributors

conda package-management

Last synced: 11 months ago
JSON representation

Acceptance Criteria

Revelant topics? true
External users? true
Open source license? true
Active? true
Fork? false

Repository metadata

Yet Another Chimeric Read Detector

Host: GitHub
URL: https://github.com/natir/yacrd
Owner: natir
License: mit
Created: 2018-03-28T23:29:17.000Z (about 7 years ago)
Default Branch: master
Last Pushed: 2022-08-12T23:36:37.000Z (over 2 years ago)
Last Synced: 2024-04-25T14:02:30.907Z (about 1 year ago)
Topics: bioinformatics, chimera, long-reads, sequence
Language: Rust
Size: 36.6 MB
Stars: 68
Watchers: 3
Forks: 8
Open Issues: 1
Releases: 0
Metadata Files:
- Readme: Readme.md
- License: LICENSE
- Citation: CITATION.cff

Owner metadata

Name: Pierre Marijon
Login: natir
Email:
Kind: user
Description:
Website: https://pierre.marijon.fr/link.html
Location: Paris
Twitter: pierre_marijon
Company: Seqoia
Icon url: https://avatars.githubusercontent.com/u/3991375?u=d06d73cb708d88846cf2813e31fd549406070432&v=4
Repositories: 105
Last ynced at: 2023-08-05T00:03:39.176Z
Profile URL: https://github.com/natir

GitHub Events

Total

Create event: 27
Release event: 20
Issues event: 89
Watch event: 76
Delete event: 12
Issue comment event: 135
Push event: 169
Pull request event: 17
Fork event: 13

Last Year

Fork event: 1
Issue comment event: 15
Issues event: 6
Watch event: 7

Committers metadata

Last synced: over 1 year ago

Total Commits: 168
Total Committers: 9
Avg Commits per committer: 18.667
Development Distribution Score (DDS): 0.625

Commits in past year: 2
Committers in past year: 1
Avg Commits per committer in past year: 2.0
Development Distribution Score (DDS) in past year: 0.0

Name	Email	Commits
Marijon Pierre	p**n@i**r	63
Pierre Marijon	p**e@m**r	45
Pierre Marijon	p**n@m**e	34
Pierre Marijon	p**n@h**e	8
Maël Kerbiriou	m**u@i**r	5
Pierre Marijon	p**t@a**r	5
Rayan Chikhi	r**i@u**m	5
Maël Kerbiriou	p**d@g**m	2
Anicet Ebou	a**u@g**m	1

Committer domains:

Issue and Pull Request metadata

Last synced: 11 months ago

Total issues: 46
Total pull requests: 9
Average time to close issues: 5 months
Average time to close pull requests: 3 days
Total issue authors: 26
Total pull request authors: 5
Average comments per issue: 2.83
Average comments per pull request: 0.56
Merged pull request: 8
Bot issues: 0
Bot pull requests: 1

Past year issues: 4
Past year pull requests: 0
Past year average time to close issues: 1 day
Past year average time to close pull requests: N/A
Past year issue authors: 4
Past year pull request authors: 0
Past year average comments per issue: 3.5
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/natir/yacrd

Top Issue Authors

natir (16)
FSciammarella (3)
tseemann (2)
dpryan79 (2)
oneillkza (2)
Yutang-ETH (1)
SFreddi (1)
SergeiF1987 (1)
Rohit-Satyam (1)
Robvh-git (1)
rchikhi (1)
nextgenusfs (1)
michieitel (1)
Maraikep (1)
jianshu93 (1)

Top Pull Request Authors

rchikhi (5)
Ebedthan (1)
Piezoid (1)
dependabot[bot] (1)
natir (1)

Top Issue Labels

bug (4)
question (1)

Top Pull Request Labels

dependencies (1)

Package metadata

Total packages: 1
Total downloads:
- cargo: 5,228 total
Total dependent packages: 0
Total dependent repositories: 0
Total versions: 8
Total maintainers: 1

crates.io: yacrd

Using all-against-all read mapping, yacrd performs: computation of pile-up coverage for each read and detection of chimeras

Homepage: https://github.com/natir/yacrd
Documentation: https://docs.rs/yacrd/
Licenses: MIT
Latest release: 0.6.2 (published almost 5 years ago)
Last Synced: 2024-05-27T06:02:42.948Z (12 months ago)
Versions: 8
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 5,228 Total
Rankings:
- Stargazers count: 15.104%
- Forks count: 16.816%
- Downloads: 21.61%
- Average: 23.332%
- Dependent repos count: 29.318%
- Dependent packages count: 33.812%
Maintainers (1)
- natir

Dependencies

Cargo.lock cargo

adler 1.0.2
aho-corasick 0.7.18
anyhow 1.0.58
atty 0.2.14
autocfg 1.1.0
bgzip 0.2.1
bincode 1.3.3
bitflags 1.3.2
bstr 0.2.17
byteorder 1.4.3
bzip2 0.4.3
bzip2-sys 0.1.11+1.0.8
cc 1.0.73
cfg-if 1.0.0
clap 3.2.14
clap_derive 3.2.7
clap_lex 0.2.4
crc32fast 1.3.2
crossbeam-channel 0.5.6
crossbeam-deque 0.8.2
crossbeam-epoch 0.9.10
crossbeam-utils 0.8.11
csv 1.1.6
csv-core 0.1.10
either 1.7.0
env_logger 0.9.0
fastrand 1.8.0
flate2 1.0.24
fs2 0.4.3
fxhash 0.2.1
hashbrown 0.12.3
heck 0.4.0
hermit-abi 0.1.19
humantime 2.1.0
indexmap 1.9.1
instant 0.1.12
itoa 0.4.8
jobserver 0.1.24
lazy_static 1.4.0
libc 0.2.126
lock_api 0.4.7
log 0.4.17
lzma-sys 0.1.19
memchr 2.5.0
memoffset 0.6.5
miniz_oxide 0.5.3
niffler 2.4.0
noodles 0.18.0
noodles-bgzf 0.8.0
noodles-core 0.3.4
noodles-fasta 0.6.0
noodles-fastq 0.4.0
noodles-sam 0.11.0
num_cpus 1.13.1
once_cell 1.13.0
os_str_bytes 6.2.0
parking_lot 0.11.2
parking_lot_core 0.8.5
pkg-config 0.3.25
proc-macro-error 1.0.4
proc-macro-error-attr 1.0.4
proc-macro2 1.0.41
quote 1.0.20
rayon 1.5.3
rayon-core 1.9.3
redox_syscall 0.2.15
regex 1.6.0
regex-automata 0.1.10
regex-syntax 0.6.27
remove_dir_all 0.5.3
remove_dir_all 0.7.0
rustc-hash 1.1.0
ryu 1.0.10
scopeguard 1.1.0
serde 1.0.140
serde_derive 1.0.140
sled 0.34.7
smallvec 1.9.0
strsim 0.10.0
syn 1.0.98
tempfile 3.3.0
termcolor 1.1.3
textwrap 0.15.0
thiserror 1.0.31
thiserror-impl 1.0.31
unicode-ident 1.0.2
version_check 0.9.4
winapi 0.3.9
winapi-i686-pc-windows-gnu 0.4.0
winapi-util 0.1.5
winapi-x86_64-pc-windows-gnu 0.4.0
xz2 0.1.7
zstd 0.7.0+zstd.1.4.9
zstd-safe 3.1.0+zstd.1.4.9
zstd-sys 1.5.0+zstd.1.4.9

Cargo.toml cargo

tempfile 3 development
anyhow 1
bincode 1
clap 3
csv 1
env_logger 0.9
log 0.4
niffler 2
noodles 0.18
rayon 1
remove_dir_all 0.7
rustc-hash 1
serde 1
sled 0.34
thiserror 1

Score: 14.993306416121609

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