SalishSeaNowcast - v26.1

What's Changed

Major changes in this release are:

• Upgrade to Python 3.14
• Migrate to Pixi for dependencies and environments management
• Disable Baynes Sound AGRIF runs

Security

• Add envvar for debug log token to skookum deployment docs by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/374

Features

• Remove VHFR FVCOM model runs from automation and repository by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/347
• Handle missing "WWATCH3 run" item in the checklist by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/349
• Refactor make_runoff_file workers by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/351
• Refactor make_201702_runoff_file checklist by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/352
• Add backfill support to download_weather worker by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/359
• Improve wave plots by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/370
• Disable forcing links for orcinus-nowcast-agrif by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/420
• Delete ECCC GRIB files after crop_gribs processing by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/421
• Remove outdated make_201702_runoff_file worker and references by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/445
• Change to use Pixi for package & environment management by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/477

Bug Fixes

• Handle 400 HTTP error in get_onc_ferry worker by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/348
• Fix run_date scope in after_update_forecast_datasets() by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/353
• Update collect_river_data checklist structure re: issue #170 by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/354
• Handle missing "WWATCH3 run" item in the checklist by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/355
• Fix wave height and period obs processing by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/360
• Correct make_plots wwatch3 run type selection logic by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/364
• Fix test_run_NEMO_hindcast tests by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/365
• Fix bugs in GHA pytest workflow by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/396
• Fix flaky tests in test_run_NEMO_hindcast by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/397
• Use np.trapezoid instead of np.trapz by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/410
• Set "water depth units" col dtype in turbidity CSV by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/449
• Handle missing TheodosiaDiversion obs in make_runoff_file by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/456

Documentation

• Update ReadTheDocs badge URL & Arbutus Cloud links in docs by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/375
• Avoid sphinx-linkcheck GHA workflow timeouts by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/398
• Add sphinx-copybutton and improve code block formatting by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/476

Maintenance

• Refactor test fixtures to add type annotations by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/350
• Switch test logging from mock logger to caplog. by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/346
• Update ERDDAP weather dataset ID in config & tests by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/369
• Update LiveOcean file URL templates in config & tests by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/373
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/376
• Update Neah Bay ssh CSV file template by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/381
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/385
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/389
• Unpin xarray version thanks to cfgrib update by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/388
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/392
• Add erddapy package to all environment files by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/395
• Add unique suffix to downloads cache key by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/400
• Updates to work on new orcinus HPC cluster configuration by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/386
• Update host name from robot.graham to robot.nibi by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/403
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/405
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/416
• Update supervisor to >=4.3.0 in all env files by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/419
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/431
• Update test log assertions and dependencies by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/433
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/436
• Use regex for CSV delimiter in make_runoff_file by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/460
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/463
• Update nibi forcing file paths to use rrg-allen by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/467
• Improve GitHub Actions workflows based on zizmor static analysis by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/473

Dependency Updates

• Bump codecov/codecov-action from 5.4.0 to 5.4.2 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/356
• Bump h11 from 0.14.0 to 0.16.0 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/358
• Bump codecov/codecov-action from 5.4.2 to 5.4.3 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/361
• Bump setuptools from 70.0.0 to 78.1.1 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/362
• Bump tornado from 6.4.2 to 6.5.1 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/363
• Bump mamba-org/setup-micromamba from 2.0.4 to 2.0.5 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/367
• Bump requests from 2.32.3 to 2.32.4 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/368
• Bump urllib3 from 2.3.0 to 2.5.0 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/371
• Bump pillow from 11.2.1 to 11.3.0 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/372
• Bump pypdf from 5.6.0 to 6.0.0 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/377
• Bump actions/checkout from 4 to 5 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/378
• Bump codecov/codecov-action from 5.4.3 to 5.5.0 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/379
• Bump h2 from 4.2.0 to 4.3.0 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/380
• Bump mamba-org/setup-micromamba from 2.0.5 to 2.0.6 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/382
• Bump codecov/codecov-action from 5.5.0 to 5.5.1 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/383
• Bump mamba-org/setup-micromamba from 2.0.6 to 2.0.7 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/384
• Bump pip from 23.3 to 25.2 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/387
• Bump pypdf from 6.1.1 to 6.1.3 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/391
• Bump brotli from 1.1.0 to 1.2.0 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/393
• Bump pip from 25.2 to 25.3 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/394
• Bump actions/checkout from 5 to 6 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/399
• Bump pypdf from 6.2.0 to 6.4.0 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/401
• Bump fonttools from 4.60.1 to 4.61.0 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/402
• Bump urllib3 from 2.5.0 to 2.6.0 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/404
• Bump codecov/codecov-action from 5.5.1 to 5.5.2 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/406
• Bump filelock from 3.20.0 to 3.20.1 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/407
• Bump bokeh from 3.8.1 to 3.8.2 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/408
• Bump pynacl from 1.5.0 to 1.6.2 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/409
• Bump urllib3 from 2.6.0 to 2.6.3 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/411
• Bump pypdf from 6.4.0 to 6.6.0 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/412
• Bump virtualenv from 20.35.4 to 20.36.1 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/413
• Bump filelock from 3.20.1 to 3.20.3 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/414
• Bump distributed from 2025.11.0 to 2026.1.1 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/415
• Bump wheel from 0.38.4 to 0.46.2 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/417
• Bump pypdf from 6.6.0 to 6.6.2 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/418
• Bump pip from 25.3 to 26.0 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/422
• Bump cryptography from 44.0.1 to 46.0.5 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/424
• Bump pillow from 12.0.0 to 12.1.1 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/425
• Bump pypdf from 6.6.2 to 6.7.1 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/426
• Bump pypdf from 6.7.1 to 6.7.2 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/427
• Bump pypdf from 6.7.2 to 6.7.4 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/429
• Bump pypdf from 6.7.4 to 6.7.5 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/430
• Bump pypdf from 6.7.5 to 6.8.0 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/432
• Bump tornado from 6.5.4 to 6.5.5 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/434
• Bump black from 26.3.0 to 26.3.1 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/435
• Bump pypdf from 6.8.0 to 6.9.1 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/437
• Bump codecov/codecov-action from 5.5.2 to 5.5.3 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/438
• Bump pypdf from 6.9.1 to 6.9.2 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/439
• Bump requests from 2.32.5 to 2.33.0 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/440
• Bump cryptography from 46.0.5 to 46.0.6 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/441
• Bump codecov/codecov-action from 5.5.3 to 6.0.0 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/442
• Bump mamba-org/setup-micromamba from 2.0.7 to 3.0.0 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/443
• Bump pygments from 2.19.2 to 2.20.0 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/444
• Bump cryptography from 46.0.5 to 46.0.6 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/446
• Bump cryptography from 46.0.6 to 46.0.7 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/447
• Bump pypdf from 6.9.2 to 6.10.0 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/448
• Bump pytest from 9.0.2 to 9.0.3 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/450
• Bump pypdf from 6.10.0 to 6.10.2 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/452
• Bump mako from 1.3.10 to 1.3.11 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/453
• Bump lxml from 6.0.2 to 6.1.0 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/454
• Bump gitpython from 3.1.46 to 3.1.47 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/455
• Bump pip from 26.0 to 26.1 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/457
• Bump gitpython from 3.1.47 to 3.1.49 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/458
• Bump mako from 1.3.11 to 1.3.12 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/459
• Bump gitpython from 3.1.49 to 3.1.50 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/461
• Bump urllib3 from 2.6.3 to 2.7.0 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/462
• Bump idna from 3.11 to 3.15 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/464
• Bump codecov/codecov-action from 6.0.0 to 6.0.1 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/465
• Bump codecov/codecov-action from 6.0.1 to 7.0.0 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/466
• Bump tornado from 6.5.5 to 6.5.6 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/469
• Bump pypdf from 6.10.2 to 6.12.0 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/468
• Bump tornado from 6.5.6 to 6.5.7 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/470
• Bump pypdf from 6.12.0 to 6.13.3 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/471
• Bump cryptography from 46.0.7 to 48.0.1 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/472
• Bump msgpack from 1.1.2 to 1.2.1 in /envs by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/474
• Bump actions/checkout from 6 to 7 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/475
• Bump pillow from 12.2.0 to 12.3.0 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/483
• Bump gitpython from 3.1.50 to 3.1.54 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/484
• Bump setuptools from 82.0.1 to 83.0.0 by @dependabot[bot] in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/485

Full Changelog: https://github.com/SalishSeaCast/SalishSeaNowcast/compare/v25.1...v26.1

Hydrosphere - Ocean Models - Python
Published by douglatornell 24 days ago

SalishSeaNowcast - v25.1

What's Changed

Features

• N/A

Bug Fixes

• Fix Baynes Sound AGRIF figure by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/326
• Fix issues that cause crop_gribs worker to fail after updating production env to Python 3.13 by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/337
• Refactor grib_to_netcdf time_counter calculation by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/338

Documentation

• Add explicit Sphinx configuration for readthedocs by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/324
• Update deployment docs by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/334

Maintenance

• Update to Python 3.13 by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/302
• Add et_xmlfile, openpyxl, & tqdm to environment files by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/321
• Update Codecov action to use 'files' instead of 'file' by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/322
• Test all figures in preparation for updating production env to Python 3.13 by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/327
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/330
• Chg to project name retrieval from pyproject.toml by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/332
• Add GHA workflow to auto-assign milestones to issues/PRs by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/333
• Standardize Python exec commands to python -m by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/340
• Change NowcastWorker mock to pytest fixture by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/343
• Drop unused ADCP plotting functions & related code by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/344
• Rename make_runoff_file workers by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/345

Dependency Updates

• Bump mamba-org/setup-micromamba from 2.0.3 to 2.0.4 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/325
• Bump codecov/codecov-action from 5.1.2 to 5.3.1 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/328
• Bump cryptography from 43.0.1 to 44.0.1 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/331
• Bump codecov/codecov-action from 5.3.1 to 5.4.0 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/339
• Bump jinja2 from 3.1.5 to 3.1.6 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/342

Full Changelog: https://github.com/SalishSeaCast/SalishSeaNowcast/compare/v24.2...v25.1

Hydrosphere - Ocean Models - Python
Published by douglatornell over 1 year ago

SalishSeaNowcast - v24.2

What's Changed

Note: After this release the workers and automation for the Vancouver Harbour and Fraser River (VHFR) FVCOM model will be removed.

Features

• Improve crop_gribs --backfill completion log message by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/279
• Add get_vfpa_hadcp after 06 weather collection by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/283
• Add rivers for NEMO sss150 config to sarracenia client configurations by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/285
• Extend worker logging ports list by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/289
• Update dataset variable dropping method in make_CHS_currents_file worker by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/294
• Add month-averaging of grazing/mortality & biology growth rate variable groups to make_averaged_dataset by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/297
• Add new subtopic pattern for datamart directory structure change by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/305
• Remove unused midoss dependencies from env files by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/313

Bug Fixes

• Fix various warnings revealed by pytest by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/273
• Pin cfgrib package at version 0.9.11.0 by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/276
• Replace warning suppression in crop_gribs worker by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/277
• Handle ValueError in get_onc_ctd salinity resampling by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/278
• Update datetime format in VFPA HADCP observation handling by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/282
• Update surface_current_tiles figure module re: matplotlib & numpy API changes by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/292
• Update date parsing for river data collection by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/293

Documentation

• Docs maintenance by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/301
• Fix broken xref to SalishSeaNowcast package by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/314
• Refine release notes structure in package dev docs by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/320

Maintenance

• Update worker main() function docstrings by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/287
• Modernize test_make_live_ocean_files by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/288
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/296
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/300
• Update httpx and fix caplog assertions in tests by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/317
• Exclude version string from coverage by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/319

Dependency Updates

• Bump codecov/codecov-action from 4.4.1 to 4.5.0 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/274
• Bump urllib3 from 2.2.1 to 2.2.2 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/275
• Bump certifi from 2024.6.2 to 2024.7.4 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/280
• Bump zipp from 3.12.0 to 3.19.1 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/281
• Bump setuptools from 57.4.0 to 70.0.0 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/284
• Bump sentry-sdk from 2.5.1 to 2.8.0 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/286
• Bump cryptography from 42.0.4 to 43.0.1 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/295
• Bump codecov/codecov-action from 4.5.0 to 4.6.0 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/298
• Bump mamba-org/setup-micromamba from 1.9.0 to 2.0.0 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/299
• Bump mamba-org/setup-micromamba from 2.0.0 to 2.0.1 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/303
• Bump codecov/codecov-action from 4.6.0 to 5.0.2 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/304
• Bump tornado from 6.4.1 to 6.4.2 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/306
• Bump codecov/codecov-action from 5.0.2 to 5.0.7 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/307
• Bump mamba-org/setup-micromamba from 2.0.1 to 2.0.2 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/308
• Bump codecov/codecov-action from 5.0.7 to 5.1.1 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/312
• Bump mamba-org/setup-micromamba from 2.0.2 to 2.0.3 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/315
• Bump codecov/codecov-action from 5.1.1 to 5.1.2 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/316
• Bump jinja2 from 3.1.4 to 3.1.5 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/318

Full Changelog: https://github.com/SalishSeaCast/SalishSeaNowcast/compare/v24.1...v24.2

Hydrosphere - Ocean Models - Python
Published by douglatornell over 1 year ago

SalishSeaNowcast - v24.1

What's Changed

• Bump gitpython from 3.1.40 to 3.1.41 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/226
• Bump jinja2 from 3.1.2 to 3.1.3 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/228
• Change to V21-11 ERDDAP dataset ids by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/227
• Drop "nowcast-dev" run from automation workflow and configuration by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/229
• Bump mamba-org/setup-micromamba from 1.7.3 to 1.8.0 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/231
• Bump codecov/codecov-action from 3.1.4 to 3.1.5 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/230
• Change upload_forcing worker to persist previous day for missing runoff files via symlinks instead of failing by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/233
• Bump codecov/codecov-action from 3.1.5 to 4.0.1 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/235
• Bump cryptography from 41.0.6 to 42.0.0 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/236
• Bump cryptography from 42.0.0 to 42.0.2 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/237
• Bump cryptography from 42.0.2 to 42.0.4 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/238
• Bump mamba-org/setup-micromamba from 1.8.0 to 1.8.1 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/240
• Bump codecov/codecov-action from 4.0.1 to 4.0.2 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/239
• Update get_onc_ctd and get_onc_ferry workers to work with ONC API v3 by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/234
• Bump codecov/codecov-action from 4.0.2 to 4.1.0 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/241
• Automate creation of day and month averaged biology, chemistry & physics datasets by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/242
• Change from 'graham-dtn' to 'robot.graham' by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/243
• Update paths for river tracers hindcast runs by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/245
• Remove host name references from make_averaged_dataset by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/246
• Bump black from 24.2.0 to 24.3.0 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/247
• Documentation maintenance by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/248
• Fix broken web site time series plots. by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/249
• Bump codecov/codecov-action from 4.1.0 to 4.1.1 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/250
• Bump pillow from 10.2.0 to 10.3.0 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/251
• Update ONC VENUS nodes model/obs comparison figure module by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/254
• Update ERDDAP URL for HRDPS fields in config & tests by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/256
• Bump codecov/codecov-action from 4.1.1 to 4.2.0 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/255
• Update badge tables in README and dev docs by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/257
• Bump idna from 3.6 to 3.7 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/258
• Bump codecov/codecov-action from 4.2.0 to 4.3.0 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/259
• Bump tqdm from 4.66.2 to 4.66.3 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/260
• Bump codecov/codecov-action from 4.3.0 to 4.3.1 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/261
• Bump jinja2 from 3.1.3 to 3.1.4 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/262
• Replace of PyPDF2 package with pypdf by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/263
• Update paths for oxygen hindcast runs by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/264
• Bump codecov/codecov-action from 4.3.1 to 4.4.0 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/265
• Bump requests from 2.31.0 to 2.32.0 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/266
• Bump codecov/codecov-action from 4.4.0 to 4.4.1 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/267
• Bump mamba-org/setup-micromamba from 1.8.1 to 1.9.0 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/268
• Update make_live_ocean_files re: single filepath by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/269
• Bump tornado from 6.4 to 6.4.1 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/270
• Improve WWatch3 wind and currents forcing file generation by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/271
• Change 'np.NaN' to 'np.nan' re: Numpy 2.0 by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/272

Full Changelog: https://github.com/SalishSeaCast/SalishSeaNowcast/compare/v23.2...v24.1

Hydrosphere - Ocean Models - Python
Published by douglatornell about 2 years ago

SalishSeaNowcast - v23.2

The main features of this release are:

• Migration of SalishSeaCast production from the v201905 to the v202111 NEMO configuration
• Updating the package from Python 3.11 to 3.12

What's Changed

• Bump urllib3 from 2.0.5 to 2.0.6 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/205
• Bump pillow from 10.0.0 to 10.0.1 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/206
• Bump gitpython from 3.1.36 to 3.1.37 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/207
• Bump mamba-org/setup-micromamba from 1.4.4 to 1.5.0 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/208
• Bump urllib3 from 2.0.6 to 2.0.7 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/210
• Bump mamba-org/setup-micromamba from 1.5.0 to 1.6.0 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/211
• Bump pip from 23.0 to 23.3 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/212
• Update to Python 3.12 by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/209
• Update readthedocs build config by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/215
• Add --backfill option to crop_gribs worker by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/216
• Update make_ww3_*_file workers and their place in the automation workflow by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/213
• Docs maintenance by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/217
• Bump cryptography from 41.0.4 to 41.0.6 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/218
• Bump mamba-org/setup-micromamba from 1.6.0 to 1.7.0 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/219
• Bump mamba-org/setup-micromamba from 1.7.0 to 1.7.3 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/220
• Bump paramiko from 3.0.0 to 3.4.0 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/221
• Add Hatch wheel build target to pyproject.toml by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/222
• Migrate production from 2019-05 to 2021-11 NEMO configuration by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/223
• Fixed test_download_live_ocean test failure by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/224
• Update to use feedgen v1.0.0 package by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/225

Full Changelog: https://github.com/SalishSeaCast/SalishSeaNowcast/compare/v23.1...v23.2

Hydrosphere - Ocean Models - Python
Published by douglatornell over 2 years ago

SalishSeaNowcast - v23.1

The major features of this release are:

• Adapting to ECCC's change of the HRDPS product from the west sub-domain on a polar-stereographic grid to the continental
  domain on a rotated lat-lon grib
• Addition of river runoff file generation for the NEMO v202111 configuration that replaces climatologies for rivers other than
  the Fraser with values based on a collection of gauged river discharge observations in all of the major watersheds
• Modernization of the Python packaging

What's Changed

• Modernize packaging by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/144
• Add release process notes to dev docs by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/145
• Bump future from 0.18.2 to 0.18.3 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/146
• Update production to sarracenia 2.22.10.post2 by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/147
• Change sarracenia configs to use queues on hpfx.collab.science.gc.ca by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/149
• Bump cryptography from 39.0.0 to 39.0.1 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/153
• Handle HRDPS change from west domain to continental domain by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/156
• Pin sphinx-rtd-theme=1.2 by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/159
• Change to run wwatch3 after NEMO nowcast-green by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/160
• Handle wind coords attr drop in make_ww3_wind_file by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/162
• Handle wwatch3 run when configuration by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/163
• Add --run-date to make_ww3_*_file workers by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/164
• Do make_turbidity_file after collect_weather 12 by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/165
• Do upload_forcing turbidity after NEMO forecast by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/166
• Change to run grib_to_netcdf on salish by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/167
• Update collect_weather worker re: changes in watchdog=2.1.7 by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/168
• Fix run-date passing for wwatch3-forecast2 by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/171
• Change smelt rivers namelist for arbutus runs by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/172
• Crop HRDPS continental GRIB files to SalishSeaCast sub-domain after they are downloaded by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/173
• Fix wwatch3 prep & runs date propagation by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/175
• Change dev & production envs to Python 3.11 by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/176
• Bump codecov/codecov-action from 3.1.2 to 3.1.3 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/178
• Change sarrcenia clients to use queues on dd.weather.gc.ca by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/180
• Change rivers runoff file generation for SalishSeaCast NEMO v202111 by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/150
• Bump codecov/codecov-action from 3.1.3 to 3.1.4 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/181
• Bump requests from 2.28.2 to 2.31.0 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/182
• Bump tornado from 6.2 to 6.3.2 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/184
• Add make_v202111_runoff_file worker by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/183
• Adjust automation re: make_v2021_runoff_file by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/185
• Bump cryptography from 39.0.1 to 41.0.0 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/186
• Bump mamba-org/setup-micromamba from 1.4.1 to 1.4.2 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/187
• Bump mamba-org/setup-micromamba from 1.4.2 to 1.4.3 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/188
• Bump cryptography from 41.0.0 to 41.0.2 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/189
• Bump certifi from 2023.5.7 to 2023.7.22 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/190
• Bump cryptography from 41.0.2 to 41.0.3 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/192
• Change crop_gribs to operate on files as they arrive by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/191
• Add single variable-hour file cropping to crop_gribs worker by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/195
• Update URL for NOAA Neah Bay sea surface height data by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/196
• Bump gitpython from 3.1.31 to 3.1.32 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/193
• Bump tornado from 6.3.2 to 6.3.3 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/194
• Bump gitpython from 3.1.32 to 3.1.34 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/198
• Bump mamba-org/setup-micromamba from 1.4.3 to 1.4.4 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/199
• Bump actions/checkout from 3 to 4 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/200
• Bump gitpython from 3.1.34 to 3.1.35 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/201
• Bump cryptography from 41.0.3 to 41.0.4 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/202
• Make crop_gribs worker more robust by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/203
• Update documentation for arbutus.cloud deployment by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/204

Full Changelog: https://github.com/SalishSeaCast/SalishSeaNowcast/compare/v22.1...v23.1

Hydrosphere - Ocean Models - Python
Published by douglatornell almost 3 years ago

SalishSeaNowcast - v22.1

What's Changed

• Bump cryptography from 3.3.1 to 3.3.2 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/71
• Add pre-commit to manage code style & repo QA by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/72
• Bump pillow from 8.1.0 to 8.1.1 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/73
• Bump lxml from 4.6.2 to 4.6.3 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/74
• Bump urllib3 from 1.26.3 to 1.26.4 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/75
• Bump lxml from 4.6.2 to 4.6.3 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/76
• Bump urllib3 from 1.26.4 to 1.26.5 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/77
• Bump pillow from 8.1.2 to 8.2.0 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/78
• Bump pillow from 8.2.0 to 8.3.2 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/79
• Bump pillow from 8.2.0 to 8.3.2 by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/80
• Bump dask from 2021.9.1 to 2021.10.0 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/83
• Update download_live_ocean re: sentinel file chg by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/84
• Bump lxml from 4.6.4 to 4.6.5 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/89
• Chg to use graham data transfer node by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/87
• Re-work download_live_ocean to get files via HTTPS by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/90
• Bump pillow from 8.4.0 to 9.0.0 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/91
• Add logging config to separate hindcast logs by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/92
• Change dev & production envs to Python 3.10 by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/93
• Drop unneeded setting of pandas display precision. by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/95
• Handle legacy ssh servers that don't use rsa-sha2 by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/97
• Update deploy docs re: OPPTools SalishSeaCast-prod branch by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/98
• Bump paramiko from 2.9.2 to 2.10.1 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/99
• Drop FVCOM VHFR forecast-x2 runs from automation by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/100
• Bump pypdf2 from 1.26.0 to 1.27.5 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/101
• Move tidal_predictions/ dir to separate tidal-predictions repo by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/102
• Fix broken wwatch3 figures generation by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/103
• archive_tarball worker by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/104
• Add rotate_hindcast_logs worker by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/105
• Delete old unused upload_all_files worker by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/106
• Add test for after_*() functions & missing after_archive_tarball() by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/107
• Bump lxml from 4.8.0 to 4.9.1 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/108
• Drop TWDP ferry obs collection by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/109
• Bump mako from 1.2.1 to 1.2.2 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/110
• Bump joblib from 1.1.0 to 1.2.0 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/111
• Fix bug in update_forecast_datasets worker by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/113
• Handle missing Neah Bay sea surface height obs by symlink to forecast file by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/114
• Add ability to run archive_tarball worker for hindcast results by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/116
• Change run sequence to run wwatch3 nowcast & forecast after NEMO forecast by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/118
• Add make_averaged_dataset worker by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/119
• Update dependencies by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/125
• Add collection & processing of Nicomekl River discharge by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/128
• Add retry feature to make_averaged_dataset by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/130
• Bump certifi from 2022.9.24 to 2022.12.7 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/131
• Move some logging to hindcast log files by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/132
• Drop make_averaged_dataset from hindcast automation by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/133
• Add GHA workflow to auto-assign issues & PRs by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/135
• Chg numpy.asscalar() calls to numpy.ndarray.item() by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/136
• Change GitHub Actions jobs to use reusable workflows by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/139
• Bump wheel from 0.37.1 to 0.38.1 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/140
• Bump setuptools from 65.4.1 to 65.5.1 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/141
• Add collection & processing of Roberts Creek discharge by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/142
• Bump pillow from 9.2.0 to 9.3.0 in /envs by @dependabot in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/124
• Add USGS rivers to collect_river_data by @douglatornell in https://github.com/SalishSeaCast/SalishSeaNowcast/pull/143

Full Changelog: https://github.com/SalishSeaCast/SalishSeaNowcast/compare/v19.1...v22.1

Hydrosphere - Ocean Models - Python
Published by douglatornell over 3 years ago