https://github.com/cokelaer/damona

singularity environment manager (application to NGS and bioinformatics)
https://github.com/cokelaer/damona

Keywords

bioinformatics conda manager ngs singularity

Keywords from Contributors

coverage de-novo pacbio rna-seq sequanix taxonomy variant-calling sequana

Last synced: 11 months ago
JSON representation

Acceptance Criteria

Revelant topics? true
External users? true
Open source license? true
Active? true
Fork? false

Repository metadata

singularity environment manager (application to NGS and bioinformatics)

Host: GitHub
URL: https://github.com/cokelaer/damona
Owner: cokelaer
License: bsd-3-clause
Created: 2020-07-24T17:09:12.000Z (almost 5 years ago)
Default Branch: main
Last Pushed: 2024-05-25T19:52:40.000Z (12 months ago)
Last Synced: 2024-06-08T02:29:53.626Z (11 months ago)
Topics: bioinformatics, conda, manager, ngs, singularity
Language: Python
Homepage: https://damona.readthedocs.io
Size: 5.79 MB
Stars: 5
Watchers: 2
Forks: 2
Open Issues: 5
Releases: 0
Metadata Files:
- Readme: README.rst
- Contributing: CONTRIBUTING.rst
- License: LICENSE

Owner metadata

Name: Thomas Cokelaer
Login: cokelaer
Email:
Kind: user
Description: Bioinformatician, Scientific Software Developer, Python developer
Website: http://thomas-cokelaer.info/
Location: Paris, France
Twitter: ThomasCokelaer
Company: Institut Pasteur
Icon url: https://avatars.githubusercontent.com/u/778821?u=98261b55bf73d849b5087fff9327bb667f36f5ce&v=4
Repositories: 62
Last ynced at: 2024-03-14T21:04:40.355Z
Profile URL: https://github.com/cokelaer

GitHub Events

Total

Create event: 25
Release event: 24
Issues event: 45
Watch event: 12
Member event: 1
Issue comment event: 7
Push event: 313
Pull request review comment event: 6
Pull request review event: 10
Pull request event: 16
Fork event: 2

Last Year

Create event: 6
Issue comment event: 2
Issues event: 6
Member event: 1
Pull request event: 2
Pull request review event: 2
Push event: 56
Release event: 8
Watch event: 3

Committers metadata

Last synced: over 1 year ago

Total Commits: 501
Total Committers: 3
Avg Commits per committer: 167.0
Development Distribution Score (DDS): 0.016

Commits in past year: 96
Committers in past year: 3
Avg Commits per committer in past year: 32.0
Development Distribution Score (DDS) in past year: 0.083

Name	Email	Commits
Thomas Cokelaer	c**r@g**m	493
ddesvillechabrol	d**l@g**m	5
Etienne Kornobis	e**s@g**m	3

Committer domains:

Issue and Pull Request metadata

Last synced: 11 months ago

Total issues: 41
Total pull requests: 19
Average time to close issues: about 2 months
Average time to close pull requests: 3 days
Total issue authors: 2
Total pull request authors: 3
Average comments per issue: 0.27
Average comments per pull request: 0.21
Merged pull request: 15
Bot issues: 0
Bot pull requests: 0

Past year issues: 7
Past year pull requests: 3
Past year average time to close issues: 4 days
Past year average time to close pull requests: 3 days
Past year issue authors: 2
Past year pull request authors: 1
Past year average comments per issue: 0.14
Past year average comments per pull request: 0.0
Past year merged pull request: 3
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/cokelaer/damona

Top Issue Authors

cokelaer (38)
khourhin (3)

Top Pull Request Authors

ddesvillechabrol (10)
cokelaer (6)
khourhin (3)

Top Issue Labels

bug (4)
enhancement (2)
New recipes (2)

Top Pull Request Labels

Package metadata

Total packages: 1
Total downloads:
- pypi: 146 last-month
Total dependent packages: 0
Total dependent repositories: 1
Total versions: 29
Total maintainers: 1

pypi.org: damona

A manager of singularity containers and their singularity recipes (NGS applications)

Homepage: https://github.com/cokelaer/damona
Documentation: https://damona.readthedocs.io/
Licenses: BSD-3
Latest release: 0.12.2 (published about 1 year ago)
Last Synced: 2024-06-08T02:22:55.119Z (11 months ago)
Versions: 29
Dependent Packages: 0
Dependent Repositories: 1
Downloads: 146 Last month
Rankings:
- Stargazers count: 6.206%
- Forks count: 7.476%
- Dependent packages count: 10.108%
- Average: 13.214%
- Downloads: 20.7%
- Dependent repos count: 21.581%
Maintainers (1)
- cokelaer

Dependencies

requirements.txt pypi

beautifulsoup4 *
click *
colorlog >=3.1.0
easydev >=0.9.36
packaging *
pyyaml *
spython *

requirements_dev.txt pypi

coveralls * development
mock * development
pytest * development
pytest-cov * development
pytest-mock * development
pytest-runner * development
pytest-timeout * development
pytest-xdist * development
sphinx >=3 development
sphinx-click * development
sphinx_rtd_theme * development

.github/workflows/bash_test.yml actions

actions/checkout v2 composite
actions/setup-python v2 composite
docker-practice/actions-setup-docker master composite

.github/workflows/fish_test.yml actions

actions/checkout v2 composite
actions/setup-python v2 composite
docker-practice/actions-setup-docker master composite
fish-actions/install-fish master composite

.github/workflows/main.yml actions

actions/checkout v2 composite
actions/setup-python v2 composite
docker-practice/actions-setup-docker master composite

.github/workflows/pypi.yml actions

actions/checkout master composite
actions/setup-python v1 composite
pypa/gh-action-pypi-publish master composite

Score: 8.39840965542627

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