https://github.com/bioconvert/bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
https://github.com/bioconvert/bioconvert
Keywords
bam2cram bam2sam bcf2vcf bigbed2bed bioinformatics conversion convertor cram2bam cram2sam embl2ena embl2fasta embl2genbank fasta2fastq genbank2embl genbank2fasta ngs phylogeny sam2bam sequence sniffer
Keywords from Contributors
conda package-management genomics dna phylogenetics identification bacterial-genomes variant-calling taxonomy sequanix
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
- Host: GitHub
- URL: https://github.com/bioconvert/bioconvert
- Owner: bioconvert
- License: gpl-3.0
- Created: 2017-10-11T19:18:58.000Z (over 7 years ago)
- Default Branch: main
- Last Pushed: 2023-12-01T20:29:04.000Z (over 1 year ago)
- Last Synced: 2024-05-19T12:22:36.675Z (12 months ago)
- Topics: bam2cram, bam2sam, bcf2vcf, bigbed2bed, bioinformatics, conversion, convertor, cram2bam, cram2sam, embl2ena, embl2fasta, embl2genbank, fasta2fastq, genbank2embl, genbank2fasta, ngs, phylogeny, sam2bam, sequence, sniffer
- Language: Python
- Homepage: http://bioconvert.readthedocs.io
- Size: 19.9 MB
- Stars: 351
- Watchers: 20
- Forks: 42
- Open Issues: 31
- Releases: 0
-
Metadata Files:
- Readme: README.rst
- Contributing: CONTRIBUTING.rst
- License: COPYING
Owner metadata
- Name: Bioconvert
- Login: bioconvert
- Email:
- Kind: organization
- Description: Conversion of life science data from one format to another.
- Website: https://bioconvert.readthedocs.io
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/40829492?v=4
- Repositories: 2
- Last ynced at: 2023-03-06T13:19:08.635Z
- Profile URL: https://github.com/bioconvert
GitHub Events
Total
- Fork event: 33
- Create event: 24
- Commit comment event: 1
- Release event: 17
- Issues event: 204
- Watch event: 309
- Delete event: 19
- Member event: 2
- Issue comment event: 83
- Push event: 291
- Pull request review comment event: 61
- Pull request review event: 72
- Pull request event: 99
Last Year
- Create event: 3
- Fork event: 11
- Issue comment event: 11
- Issues event: 12
- Pull request event: 17
- Push event: 29
- Release event: 5
- Watch event: 171
Committers metadata
Last synced: 12 months ago
Total Commits: 1,715
Total Committers: 33
Avg Commits per committer: 51.97
Development Distribution Score (DDS): 0.418
Commits in past year: 13
Committers in past year: 2
Avg Commits per committer in past year: 6.5
Development Distribution Score (DDS) in past year: 0.077
| Name | Commits | |
|---|---|---|
| Thomas Cokelaer | c****r@g****m | 998 |
| HugoCaro | h****o@u****r | 224 |
| Bryan Brancotte | b****e@p****r | 149 |
| Frederic Lemoine | f****e | 76 |
| Bertrand Néron | b****n@p****r | 68 |
| Sulyvan Dollin | d****n@g****m | 36 |
| Blaise Li | b****t@n****g | 27 |
| Yoann Dufresne | y****0@g****m | 23 |
| Anne Biton | a****n@g****m | 20 |
| sdollin | s****n@s****t | 12 |
| Amandine PERRIN | a****n@p****r | 12 |
| Nicolas MAILLET | n****t@p****r | 11 |
| Nicolas | n****9@g****m | 10 |
| khillion | h****o@g****m | 8 |
| Tru Huynh | t****u@p****r | 7 |
| Blaise Li | b****i@n****g | 6 |
| Pierre LECHAT | p****t@p****r | 5 |
| Anna Zhukova | z****k@g****m | 4 |
| Etienne Kornobis | e****s@g****m | 4 |
| rlegendre | r****e@p****r | 2 |
| Amine Ghozlane | a****e@p****r | 1 |
| HugoCaro | 4****o | 1 |
| Christian Brueffer | c****n@b****o | 1 |
| Ambu Vijayan | 8****n | 1 |
| Amine Ghozlane | a****e@g****m | 1 |
| Etienne Kornobis | e****s@p****r | 1 |
| Louis Pasteur | l****r@s****r | 1 |
| Pierre LECHAT | p****t@s****r | 1 |
| Pierre LECHAT | p****t@t****r | 1 |
| Simon Murray | s****y@g****m | 1 |
| and 3 more... | ||
Committer domains:
- pasteur.fr: 11
- 32kb.org: 1
- tars-submit0.tars.cluster.pasteur.fr: 1
- ssh.it.pasteur.fr: 1
- souci.hubbioit.pasteur.fr: 1
- brueffer.io: 1
- normalesup.org: 1
- souci.hubbioit: 1
- nsup.org: 1
- u-psud.fr: 1
Issue and Pull Request metadata
Last synced: 12 months ago
Total issues: 47
Total pull requests: 62
Average time to close issues: 8 months
Average time to close pull requests: 6 days
Total issue authors: 18
Total pull request authors: 10
Average comments per issue: 0.89
Average comments per pull request: 0.13
Merged pull request: 59
Bot issues: 0
Bot pull requests: 0
Past year issues: 5
Past year pull requests: 4
Past year average time to close issues: 21 days
Past year average time to close pull requests: 23 days
Past year issue authors: 5
Past year pull request authors: 2
Past year average comments per issue: 0.4
Past year average comments per pull request: 0.0
Past year merged pull request: 4
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- cokelaer (26)
- ysuzuki1978 (2)
- HugoCaro (2)
- khourhin (2)
- tuspjo (2)
- yoann-dufresne (1)
- ymouscaz (1)
- wbszhu (1)
- tsm-tsm (1)
- truatpasteurdotfr (1)
- SimonDMurray (1)
- Sdollin (1)
- rlegendre (1)
- lufuhao (1)
- lilithfeer (1)
Top Pull Request Authors
- cokelaer (36)
- HugoCaro (18)
- fredericlemoine (1)
- memmaker (1)
- SimonDMurray (1)
- bryan-brancotte (1)
- ntraut (1)
- truatpasteurdotfr (1)
- cbrueffer (1)
- ambuvjyn (1)
Top Issue Labels
- new converter (8)
- bug (5)
- enhancement (4)
- todo (4)
- refactoring (3)
- help wanted (1)
- new method (1)
- in progress (1)
Top Pull Request Labels
- enhancement (12)
- in progress (1)
- help wanted (1)
- refactoring (1)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 286 last-month
- Total dependent packages: 1
- Total dependent repositories: 1
- Total versions: 32
- Total maintainers: 1
pypi.org: bioconvert
convert between bioinformatics formats
- Homepage: https://github.com/bioconvert/bioconvert
- Documentation: https://bioconvert.readthedocs.io/
- Licenses: GPLv3
- Latest release: 1.1.1 (published almost 2 years ago)
- Last Synced: 2024-05-19T12:22:05.025Z (12 months ago)
- Versions: 32
- Dependent Packages: 1
- Dependent Repositories: 1
- Downloads: 286 Last month
-
Rankings:
- Stargazers count: 3.436%
- Forks count: 6.217%
- Dependent packages count: 10.082%
- Average: 10.83%
- Downloads: 12.795%
- Dependent repos count: 21.62%
- Maintainers (1)
Dependencies
requirements.txt
pypi
- biopython >=1.70
- biosniff *
- colorlog *
- deeptools *
- easydev *
- mappy *
- matplotlib *
- networkx *
- pandas *
- py2bit *
- pyBigWig *
- pyexcel *
- pyexcel-ods3 *
- pyexcel-xls *
- pyexcel-xlsx *
- pysam *
- pyyaml *
- statsmodels *
- tqdm *
- xlrd *
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Score: 15.108354858185487