https://github.com/epigen/mixscape_seurat

A Snakemake workflow for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's method Mixscape.
https://github.com/epigen/mixscape_seurat

Keywords

bioinformatics biomedical-data-science perturbation-analysis sccrispr-seq scrna-seq single-cell snakemake snrna-seq visualization workflow

Last synced: 11 months ago
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• Revelant topics? true
• External users? true
• Open source license? true
• Active? true
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Repository metadata

A Snakemake workflow for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's method Mixscape.

• Host: GitHub
• URL: https://github.com/epigen/mixscape_seurat
• Owner: epigen
• License: mit
• Created: 2022-04-14T14:26:34.000Z (about 3 years ago)
• Default Branch: main
• Last Pushed: 2024-04-11T09:51:33.000Z (about 1 year ago)
• Last Synced: 2024-04-11T10:50:49.519Z (about 1 year ago)
• Topics: bioinformatics, biomedical-data-science, perturbation-analysis, sccrispr-seq, scrna-seq, single-cell, snakemake, snrna-seq, visualization, workflow
• Language: R
• Homepage: https://epigen.github.io/mixscape_seurat/
• Size: 90.8 KB
• Stars: 2
• Watchers: 5
• Forks: 0
• Open Issues: 1
• Releases: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Citation: CITATION.cff

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Owner metadata

• Name: Computational Epigenetics
• Login: epigen
• Email:
• Kind: organization
• Description: Computational Epigenetics Research and Software
• Website: http://www.medical-epigenomics.org/
• Location: Vienna, Austria
• Twitter:
• Company:
• Icon url: https://avatars.githubusercontent.com/u/3911278?v=4
• Repositories: 17
• Last ynced at: 2023-03-05T15:22:40.323Z
• Profile URL: https://github.com/epigen

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GitHub Events

Total

• Create event: 2
• Issues event: 12
• Release event: 2
• Watch event: 7
• Issue comment event: 3
• Public event: 1
• Push event: 19

Last Year

• Create event: 2
• Issue comment event: 3
• Issues event: 12
• Push event: 15
• Release event: 2
• Watch event: 6

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Committers metadata

Last synced: over 1 year ago

Name	Email	Commits
sreichl	r****n@g****m	12
Stephan Reichl	5****l	8

Committer domains:

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Issue and Pull Request metadata

Last synced: over 1 year ago

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/epigen/mixscape_seurat

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Score: 1.791759469228055