https://github.com/epigen/dea_seurat

A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
https://github.com/epigen/dea_seurat

Keywords

bioinformatics biomedical-data-science differential-expression-analysis scrna-seq single-cell snakemake snrna-seq visualization volcano-plot workflow

Last synced: 11 months ago
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Acceptance Criteria

• Revelant topics? true
• External users? true
• Open source license? true
• Active? true
• Fork? false

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Repository metadata

A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.

• Host: GitHub
• URL: https://github.com/epigen/dea_seurat
• Owner: epigen
• License: mit
• Created: 2022-04-20T12:07:21.000Z (about 3 years ago)
• Default Branch: main
• Last Pushed: 2024-05-27T12:46:42.000Z (12 months ago)
• Last Synced: 2024-05-27T15:21:42.279Z (12 months ago)
• Topics: bioinformatics, biomedical-data-science, differential-expression-analysis, scrna-seq, single-cell, snakemake, snrna-seq, visualization, volcano-plot, workflow
• Language: R
• Homepage:
• Size: 335 KB
• Stars: 10
• Watchers: 5
• Forks: 10
• Open Issues: 2
• Releases: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Citation: CITATION.cff

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Owner metadata

• Name: Computational Epigenetics
• Login: epigen
• Email:
• Kind: organization
• Description: Computational Epigenetics Research and Software
• Website: http://www.medical-epigenomics.org/
• Location: Vienna, Austria
• Twitter:
• Company:
• Icon url: https://avatars.githubusercontent.com/u/3911278?v=4
• Repositories: 17
• Last ynced at: 2023-03-05T15:22:40.323Z
• Profile URL: https://github.com/epigen

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GitHub Events

Total

• Create event: 2
• Release event: 2
• Issues event: 24
• Watch event: 10
• Issue comment event: 3
• Push event: 20
• Public event: 1
• Fork event: 1

Last Year

• Create event: 2
• Fork event: 1
• Issue comment event: 3
• Issues event: 19
• Push event: 14
• Release event: 2
• Watch event: 4

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Committers metadata

Last synced: over 1 year ago

Name	Email	Commits
sreichl	r****n@g****m	13
Stephan Reichl	5****l	6

Committer domains:

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Issue and Pull Request metadata

Last synced: over 1 year ago

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/epigen/dea_seurat

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Score: 3.1780538303479458