https://github.com/joybio/multiprime
multiPrime is a mismatch-tolerant minimal primer set design tool for large and diverse sequences (e.g. Virus). Here is a web-based version (test: http://multiPrime.cn))
https://github.com/joybio/multiprime
Keywords
bioinformatics multiplexpcr panel pcr python snakemake tngs viterbi
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
multiPrime is a mismatch-tolerant minimal primer set design tool for large and diverse sequences (e.g. Virus). Here is a web-based version (test: http://multiPrime.cn))
- Host: GitHub
- URL: https://github.com/joybio/multiprime
- Owner: joybio
- License: mit
- Created: 2022-09-05T06:46:49.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2024-04-01T03:02:45.000Z (about 1 year ago)
- Last Synced: 2024-05-03T02:27:13.901Z (about 1 year ago)
- Topics: bioinformatics, multiplexpcr, panel, pcr, python, snakemake, tngs, viterbi
- Language: Python
- Homepage:
- Size: 96.1 MB
- Stars: 226
- Watchers: 9
- Forks: 16
- Open Issues: 15
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Owner metadata
- Name: Junbo Yang
- Login: joybio
- Email:
- Kind: user
- Description: keep learning
- Website:
- Location:
- Twitter:
- Company: Peiking university
- Icon url: https://avatars.githubusercontent.com/u/41945265?v=4
- Repositories: 2
- Last ynced at: 2023-04-13T09:28:08.727Z
- Profile URL: https://github.com/joybio
GitHub Events
Total
- Create event: 30
- Issues event: 15
- Release event: 8
- Watch event: 117
- Delete event: 14
- Issue comment event: 22
- Member event: 4
- Push event: 290
- Fork event: 14
Last Year
- Create event: 3
- Fork event: 14
- Issue comment event: 22
- Issues event: 15
- Member event: 4
- Push event: 192
- Release event: 2
- Watch event: 115
Committers metadata
Last synced: over 1 year ago
Total Commits: 326
Total Committers: 2
Avg Commits per committer: 163.0
Development Distribution Score (DDS): 0.049
Commits in past year: 208
Committers in past year: 2
Avg Commits per committer in past year: 104.0
Development Distribution Score (DDS) in past year: 0.005
| Name | Commits | |
|---|---|---|
| joybio | y****i@1****m | 310 |
| Junbo Yang | 4****o | 16 |
Committer domains:
- 126.com: 1
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 17
Total pull requests: 0
Average time to close issues: 4 days
Average time to close pull requests: N/A
Total issue authors: 9
Total pull request authors: 0
Average comments per issue: 2.53
Average comments per pull request: 0
Merged pull request: 0
Bot issues: 0
Bot pull requests: 0
Past year issues: 13
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 8
Past year pull request authors: 0
Past year average comments per issue: 2.92
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- joybio (3)
- Y-antian (3)
- Eager144000 (2)
- guangingmai (2)
- yuzh2000 (2)
- zhuxu001 (2)
- Dosin-Lee (1)
- MAXINELSX (1)
- wangzhichao1990 (1)
Top Pull Request Authors
Top Issue Labels
- documentation (3)
- bug (1)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 81 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 21
- Total maintainers: 1
pypi.org: multiprime
- Homepage:
- Documentation: https://multiprime.readthedocs.io/
- Licenses: MIT
- Latest release: 2.4.7 (published over 1 year ago)
- Last Synced: 2024-06-02T18:41:51.387Z (11 months ago)
- Versions: 21
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 81 Last month
-
Rankings:
- Dependent packages count: 6.633%
- Downloads: 9.475%
- Average: 15.573%
- Dependent repos count: 30.611%
- Maintainers (1)
Dependencies
- bedtools =2.30.0
- biopython =1.79
- blast =2.13.0
- bowtie2 =2.2.5
- cd-hit =4.8.1
- functools *
- math *
- muscle =3.8.1551
- operator *
- pandas *
- python =3.9.9
- snakemake =7.8.1
- biopython =1.79
- blast =2.13.0
- bowtie =1.0.0
- bowtie2 =2.5.1
- cd-hit =4.8.1
- fastani =1.33
- mafft =7.515
- muscle =3.8.1551
- numpy =1.21.6
- pandas =1.3.5
- perl =5.32.1
- primer3 =2.6.1
- python =3.7.6
- samtools =1.16.1
- snakemake =7.8.1
- tabulate =0.8.9
Score: 10.584663361314853