https://github.com/openomics/ervx
Endogenous Retrovirus Expression Pipeline for Human and Mouse for use with bulk RNA
https://github.com/openomics/ervx
Keywords
endogenous-retrovirus-expression herv human mouse pipeline quality-control singularity snakemake workflow
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Endogenous Retrovirus Expression Pipeline for Human and Mouse for use with bulk RNA
- Host: GitHub
- URL: https://github.com/openomics/ervx
- Owner: OpenOmics
- License: mit
- Created: 2023-03-07T15:46:09.000Z (about 2 years ago)
- Default Branch: main
- Last Pushed: 2024-06-05T17:45:43.000Z (11 months ago)
- Last Synced: 2024-06-05T19:59:27.847Z (11 months ago)
- Topics: endogenous-retrovirus-expression, herv, human, mouse, pipeline, quality-control, singularity, snakemake, workflow
- Language: Python
- Homepage: https://openomics.github.io/ervx/
- Size: 894 KB
- Stars: 1
- Watchers: 2
- Forks: 1
- Open Issues: 1
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- License: LICENSE
Owner metadata
- Name: OpenOmics
- Login: OpenOmics
- Email:
- Kind: organization
- Description: Open Bioinformatics Research
- Website:
- Location: United States of America
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/97639341?v=4
- Repositories: 9
- Last ynced at: 2023-03-06T03:38:04.692Z
- Profile URL: https://github.com/OpenOmics
GitHub Events
Total
- Issues event: 1
- Watch event: 1
- Delete event: 1
- Push event: 59
- Fork event: 1
- Create event: 3
Last Year
- Create event: 3
- Delete event: 1
- Issues event: 1
- Push event: 12
- Watch event: 1
Committers metadata
Last synced: over 1 year ago
Total Commits: 47
Total Committers: 2
Avg Commits per committer: 23.5
Development Distribution Score (DDS): 0.064
Commits in past year: 47
Committers in past year: 2
Avg Commits per committer in past year: 23.5
Development Distribution Score (DDS) in past year: 0.064
| Name | Commits | |
|---|---|---|
| asyakhl | a****l | 44 |
| skchronicles | k****3@g****m | 3 |
Committer domains:
Issue and Pull Request metadata
Last synced: over 1 year ago
Total issues: 1
Total pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Total issue authors: 1
Total pull request authors: 0
Average comments per issue: 0.0
Average comments per pull request: 0
Merged pull request: 0
Bot issues: 0
Bot pull requests: 0
Past year issues: 1
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 1
Past year pull request authors: 0
Past year average comments per issue: 0.0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- asyakhl (1)
Top Pull Request Authors
Top Issue Labels
Top Pull Request Labels
Dependencies
- actions/checkout v2 composite
- docker://snakemake/snakemake v5.24.2 composite
- ubuntu 20.04 build
- ubuntu 22.04 build
- ubuntu 22.04 build
- ubuntu 22.04 build
- GitPython ==3.1.7
- Jinja2 ==2.11.3
- Markdown ==3.2.2
- MarkupSafe ==1.1.1
- PyYAML >=5.4
- babel >=2.9.1
- click ==7.1.2
- future ==0.18.2
- gitdb ==4.0.5
- htmlmin ==0.1.12
- importlib-metadata >=3.10
- joblib ==0.16.0
- jsmin ==3.0.0
- livereload ==2.6.1
- lunr ==0.5.8
- mike *
- mkdocs >=1.3.0
- mkdocs-awesome-pages-plugin ==2.2.1
- mkdocs-git-revision-date-localized-plugin ==0.7
- mkdocs-git-revision-date-plugin *
- mkdocs-material *
- mkdocs-material-extensions *
- mkdocs-minify-plugin ==0.3.0
- mkdocs-redirects ==1.0.1
- nltk >=3.6.6
- pygments >=2.12
- pymdown-extensions *
- pytz ==2020.1
- regex *
- six ==1.15.0
- smmap ==3.0.4
- tornado ==6.0.4
- tqdm ==4.48.2
- zipp ==3.1.0
- actions/checkout v2 composite
- actions/setup-python v2 composite
Score: 1.3862943611198906