https://github.com/pierrebarrat/treeknit.jl
TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).
https://github.com/pierrebarrat/treeknit.jl
Keywords
arg phylogeny reassortment recombination
Keywords from Contributors
clade sequences influenza
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).
- Host: GitHub
- URL: https://github.com/pierrebarrat/treeknit.jl
- Owner: PierreBarrat
- License: mit
- Created: 2019-05-17T15:53:09.000Z (almost 6 years ago)
- Default Branch: master
- Last Pushed: 2024-02-22T13:17:21.000Z (about 1 year ago)
- Last Synced: 2024-05-16T13:57:58.868Z (12 months ago)
- Topics: arg, phylogeny, reassortment, recombination
- Language: Julia
- Homepage:
- Size: 2.46 MB
- Stars: 10
- Watchers: 2
- Forks: 1
- Open Issues: 0
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Owner metadata
- Name: Pierre Barrat
- Login: PierreBarrat
- Email:
- Kind: user
- Description:
- Website: https://pierrebarrat.github.io/
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/14330776?v=4
- Repositories: 8
- Last ynced at: 2023-03-09T22:20:45.812Z
- Profile URL: https://github.com/PierreBarrat
GitHub Events
Total
- Fork event: 2
- Create event: 50
- Commit comment event: 53
- Release event: 20
- Issues event: 5
- Watch event: 10
- Delete event: 19
- Member event: 1
- Issue comment event: 41
- Push event: 358
- Pull request review event: 12
- Pull request review comment event: 22
- Pull request event: 59
Last Year
- Commit comment event: 12
- Create event: 8
- Fork event: 1
- Issue comment event: 10
- Pull request event: 11
- Push event: 37
- Release event: 7
- Watch event: 1
Committers metadata
Last synced: 12 months ago
Total Commits: 424
Total Committers: 5
Avg Commits per committer: 84.8
Development Distribution Score (DDS): 0.179
Commits in past year: 11
Committers in past year: 3
Avg Commits per committer in past year: 3.667
Development Distribution Score (DDS) in past year: 0.545
Name | Commits | |
---|---|---|
PierreBarrat | p****t@l****r | 348 |
anna-parker | a****r@g****m | 56 |
Anna Parker | 5****r | 14 |
Marco Molari | m****1@g****m | 4 |
John Huddleston | h****j@g****m | 2 |
Committer domains:
- live.fr: 1
Issue and Pull Request metadata
Last synced: 12 months ago
Total issues: 3
Total pull requests: 37
Average time to close issues: 8 days
Average time to close pull requests: 7 days
Total issue authors: 3
Total pull request authors: 4
Average comments per issue: 8.67
Average comments per pull request: 0.59
Merged pull request: 32
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 6
Past year average time to close issues: N/A
Past year average time to close pull requests: about 10 hours
Past year issue authors: 0
Past year pull request authors: 3
Past year average comments per issue: 0
Past year average comments per pull request: 0.83
Past year merged pull request: 6
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- JuliaTagBot (1)
- pdimens (1)
- Xiaoman-Wei (1)
Top Pull Request Authors
- PierreBarrat (27)
- anna-parker (8)
- mmolari (1)
- huddlej (1)
Top Issue Labels
Top Pull Request Labels
Package metadata
- Total packages: 1
- Total downloads: unknown
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 21
juliahub.com: TreeKnit
TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).
- Homepage:
- Documentation: https://docs.juliahub.com/TreeKnit/ICiKh/
- Licenses: MIT
- Latest release: 0.5.7 (published about 1 year ago)
- Last Synced: 2024-05-23T15:04:12.778Z (12 months ago)
- Versions: 21
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 9.94%
- Average: 34.501%
- Stargazers count: 35.627%
- Dependent packages count: 38.915%
- Forks count: 53.523%
Dependencies
- JuliaRegistries/TagBot v1 composite
- actions/checkout v2 composite
- actions/checkout v2 composite
- julia-actions/setup-julia latest composite
- actions/checkout v2 composite
- julia-actions/setup-julia latest composite
Score: -Infinity