https://github.com/pierrebarrat/treeknit.jl

TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).
https://github.com/pierrebarrat/treeknit.jl

Keywords

arg phylogeny reassortment recombination

Keywords from Contributors

clade sequences influenza

Last synced: 11 months ago
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Repository metadata

TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).


Owner metadata


GitHub Events

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Last Year

Committers metadata

Last synced: 12 months ago

Total Commits: 424
Total Committers: 5
Avg Commits per committer: 84.8
Development Distribution Score (DDS): 0.179

Commits in past year: 11
Committers in past year: 3
Avg Commits per committer in past year: 3.667
Development Distribution Score (DDS) in past year: 0.545

Name Email Commits
PierreBarrat p****t@l****r 348
anna-parker a****r@g****m 56
Anna Parker 5****r 14
Marco Molari m****1@g****m 4
John Huddleston h****j@g****m 2

Committer domains:


Issue and Pull Request metadata

Last synced: 12 months ago

Total issues: 3
Total pull requests: 37
Average time to close issues: 8 days
Average time to close pull requests: 7 days
Total issue authors: 3
Total pull request authors: 4
Average comments per issue: 8.67
Average comments per pull request: 0.59
Merged pull request: 32
Bot issues: 0
Bot pull requests: 0

Past year issues: 0
Past year pull requests: 6
Past year average time to close issues: N/A
Past year average time to close pull requests: about 10 hours
Past year issue authors: 0
Past year pull request authors: 3
Past year average comments per issue: 0
Past year average comments per pull request: 0.83
Past year merged pull request: 6
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/pierrebarrat/treeknit.jl

Top Issue Authors

  • JuliaTagBot (1)
  • pdimens (1)
  • Xiaoman-Wei (1)

Top Pull Request Authors

  • PierreBarrat (27)
  • anna-parker (8)
  • mmolari (1)
  • huddlej (1)

Top Issue Labels

Top Pull Request Labels


Package metadata

juliahub.com: TreeKnit

TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).

  • Homepage:
  • Documentation: https://docs.juliahub.com/TreeKnit/ICiKh/
  • Licenses: MIT
  • Latest release: 0.5.7 (published about 1 year ago)
  • Last Synced: 2024-05-23T15:04:12.778Z (12 months ago)
  • Versions: 21
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Rankings:
    • Dependent repos count: 9.94%
    • Average: 34.501%
    • Stargazers count: 35.627%
    • Dependent packages count: 38.915%
    • Forks count: 53.523%

Dependencies

.github/workflows/TagBot.yml actions
  • JuliaRegistries/TagBot v1 composite
.github/workflows/cleanup-docs.yml actions
  • actions/checkout v2 composite
.github/workflows/docs.yml actions
  • actions/checkout v2 composite
  • julia-actions/setup-julia latest composite
.github/workflows/tests.yml actions
  • actions/checkout v2 composite
  • julia-actions/setup-julia latest composite

Score: -Infinity