https://github.com/guma44/geoparse
Python library to access Gene Expression Omnibus Database (GEO)
https://github.com/guma44/geoparse
Keywords
bioinformatics geo-database high-throughput-sequencing htseq microarray rna-seq rna-sequencing
Keywords from Contributors
bgzf dna fasta genomics indexing protein samtools
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Python library to access Gene Expression Omnibus Database (GEO)
- Host: GitHub
- URL: https://github.com/guma44/geoparse
- Owner: guma44
- License: bsd-3-clause
- Created: 2015-08-16T08:26:27.000Z (over 9 years ago)
- Default Branch: master
- Last Pushed: 2024-04-23T18:49:47.000Z (about 1 year ago)
- Last Synced: 2024-06-04T11:20:46.566Z (11 months ago)
- Topics: bioinformatics, geo-database, high-throughput-sequencing, htseq, microarray, rna-seq, rna-sequencing
- Language: Jupyter Notebook
- Size: 13.3 MB
- Stars: 131
- Watchers: 8
- Forks: 49
- Open Issues: 21
- Releases: 0
-
Metadata Files:
- Readme: README.rst
- Changelog: HISTORY.rst
- Contributing: CONTRIBUTING.rst
- License: LICENSE
Owner metadata
- Name: Rafal Gumienny
- Login: guma44
- Email:
- Kind: user
- Description: Scientific Software Engineer at Novartis Institutes for BioMedical Research (NIBR)
- Website: guma44.github.io
- Location: Basel, CH
- Twitter:
- Company: Novartis
- Icon url: https://avatars.githubusercontent.com/u/7634398?u=862ce491d508e9394ccd7982b7b1e939f50a87aa&v=4
- Repositories: 3
- Last ynced at: 2023-03-03T14:35:31.790Z
- Profile URL: https://github.com/guma44
GitHub Events
Total
- Create event: 32
- Release event: 1
- Issues event: 97
- Watch event: 145
- Delete event: 15
- Issue comment event: 165
- Push event: 129
- Pull request review comment event: 17
- Pull request event: 45
- Fork event: 60
Last Year
- Create event: 1
- Fork event: 2
- Issue comment event: 2
- Issues event: 1
- Pull request event: 2
- Push event: 4
- Watch event: 13
Committers metadata
Last synced: 11 months ago
Total Commits: 212
Total Committers: 21
Avg Commits per committer: 10.095
Development Distribution Score (DDS): 0.349
Commits in past year: 2
Committers in past year: 2
Avg Commits per committer in past year: 1.0
Development Distribution Score (DDS) in past year: 0.5
| Name | Commits | |
|---|---|---|
| Rafal Gumienny | g****4@g****m | 138 |
| Rafal Gumienny | r****y@u****h | 30 |
| simonvh | s****n@g****m | 14 |
| Haries Ramdhani | h****e@g****m | 5 |
| tatsu | t****1@g****m | 5 |
| Tycho Bismeijer | t****r@n****l | 2 |
| Rafal Gumienny | g****1@c****t | 2 |
| Kurt Wheeler | k****1@g****m | 2 |
| Aleksandra Galitsyna | a****a@m****h | 2 |
| Kwat | K****E | 1 |
| Michael von Papen | 2****n | 1 |
| William C Grisaitis | w****s@g****m | 1 |
| Zhongjie He | e****6 | 1 |
| Alejandro Barrera | a****a@d****u | 1 |
| Aleksandra Galitsyna | a****a@g****m | 1 |
| BioIndoData | r****s@g****m | 1 |
| Maarten-vd-Sande | m****e@h****m | 1 |
| Michael Lampe | M****e@g****m | 1 |
| Rafal Gumienny | r****y@n****m | 1 |
| Rafal Gumienny | r****y@p****m | 1 |
| Rich Jones | m****u@g****m | 1 |
Committer domains:
- novartis.com: 1
- duke.edu: 1
- mgmt.cobrain.stech: 1
- c02xw1majgh6.eu.novartis.net: 1
- nki.nl: 1
- unibas.ch: 1
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 58
Total pull requests: 25
Average time to close issues: about 2 months
Average time to close pull requests: 3 months
Total issue authors: 36
Total pull request authors: 17
Average comments per issue: 2.24
Average comments per pull request: 1.48
Merged pull request: 21
Bot issues: 0
Bot pull requests: 0
Past year issues: 1
Past year pull requests: 1
Past year average time to close issues: N/A
Past year average time to close pull requests: about 3 hours
Past year issue authors: 1
Past year pull request authors: 1
Past year average comments per issue: 0.0
Past year average comments per pull request: 1.0
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- antonkulaga (10)
- Miserlou (7)
- tyasird (3)
- halioui (3)
- abysslover (2)
- KwatMDPhD (2)
- CholoTook (2)
- jonasfreimuth (1)
- liugaocn (1)
- Mengflz (1)
- n1mus (1)
- ppanteliadis (1)
- RemyLau (1)
- ruxi (1)
- sowmyamanojna (1)
Top Pull Request Authors
- simonvh (5)
- KwatMDPhD (3)
- ttyskg (2)
- guma44 (2)
- hariesramdhani (1)
- miguelroboso (1)
- agalitsyna (1)
- Miserlou (1)
- eric6356 (1)
- alexbarrera (1)
- tychobismeijer (1)
- BioInfoData (1)
- MichaelLampe (1)
- kurtwheeler (1)
- Maarten-vd-Sande (1)
Top Issue Labels
- bug (13)
- enhancement (13)
- possible enhancement (1)
Top Pull Request Labels
Package metadata
- Total packages: 2
-
Total downloads:
- pypi: 11,512 last-month
- Total docker downloads: 6,652
- Total dependent packages: 3 (may contain duplicates)
- Total dependent repositories: 6 (may contain duplicates)
- Total versions: 24
- Total maintainers: 1
pypi.org: geoparse
Python library to access Gene Expression Omnibus Database (GEO)
- Homepage: https://github.com/guma44/GEOparse
- Documentation: https://geoparse.readthedocs.io/
- Licenses: BSD
- Latest release: 2.0.4 (published about 1 year ago)
- Last Synced: 2024-06-04T11:24:12.463Z (11 months ago)
- Versions: 23
- Dependent Packages: 1
- Dependent Repositories: 5
- Downloads: 11,512 Last month
- Docker Downloads: 6,652
-
Rankings:
- Docker downloads count: 1.571%
- Downloads: 2.964%
- Average: 4.678%
- Dependent packages count: 4.71%
- Forks count: 5.81%
- Stargazers count: 6.358%
- Dependent repos count: 6.653%
- Maintainers (1)
conda-forge.org: geoparse
- Homepage: https://github.com/guma44/GEOparse
- Licenses: BSD-3-Clause
- Latest release: 2.0.3 (published over 3 years ago)
- Last Synced: 2024-06-03T08:03:11.442Z (11 months ago)
- Versions: 1
- Dependent Packages: 2
- Dependent Repositories: 1
-
Rankings:
- Dependent packages count: 19.597%
- Dependent repos count: 24.223%
- Average: 25.227%
- Forks count: 25.445%
- Stargazers count: 31.643%
Dependencies
- black *
- flake8 *
- isort *
- numpy >=1.7
- pandas >=0.21
- pre-commit *
- pytest *
- pytest-cov *
- pytz >=2013
- requests >=2.21.0
- sphinxcontrib-napoleon >=0.6.1
- tqdm >=4.31.1
Score: 17.87620526097142