https://github.com/ding-lab/charger

Characterization of Germline variants
https://github.com/ding-lab/charger

Keywords

acmg annotations bioinformatics characterization clinical clinvar diseases exac germline-variants gnomad pathogenic-variants pathogenicity variants vep

Last synced: 11 months ago
JSON representation

Acceptance Criteria

Revelant topics? true
External users? true
Open source license? true
Active? true
Fork? false

Repository metadata

Characterization of Germline variants

Host: GitHub
URL: https://github.com/ding-lab/charger
Owner: ding-lab
License: gpl-3.0
Created: 2015-10-19T17:24:05.000Z (over 9 years ago)
Default Branch: master
Last Pushed: 2022-03-15T14:13:16.000Z (about 3 years ago)
Last Synced: 2024-06-06T20:47:37.662Z (11 months ago)
Topics: acmg, annotations, bioinformatics, characterization, clinical, clinvar, diseases, exac, germline-variants, gnomad, pathogenic-variants, pathogenicity, variants, vep
Language: Python
Homepage: https://ding-lab.github.io/CharGer/
Size: 16.8 MB
Stars: 94
Watchers: 19
Forks: 37
Open Issues: 9
Releases: 0
Metadata Files:
- Readme: README.md
- Changelog: CHANGES.rst
- License: LICENSE.txt

Owner metadata

Name: Li Ding's Lab
Login: ding-lab
Email: [email protected]
Kind: organization
Description: Li Ding's Lab at the Washington University School of Medicine
Website: dinglab.wustl.edu
Location: St. Louis, MO, USA
Twitter:
Company:
Icon url: https://avatars.githubusercontent.com/u/3360897?v=4
Repositories: 128
Last ynced at: 2024-03-26T23:52:17.467Z
Profile URL: https://github.com/ding-lab

GitHub Events

Total

Fork event: 42
Create event: 40
Commit comment event: 1
Issues event: 64
Release event: 7
Watch event: 104
Delete event: 24
Issue comment event: 69
Member event: 4
Push event: 144
Public event: 1
Pull request event: 42

Last Year

Fork event: 2
Issues event: 1
Watch event: 12

Committers metadata

Last synced: over 1 year ago

Total Commits: 405
Total Committers: 11
Avg Commits per committer: 36.818
Development Distribution Score (DDS): 0.548

Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0

Name	Email	Commits
Liang-Bo Wang	l**g@w**u	183
Adam David Scott	a**m@a**m	100
Kuan	h**n@g**m	39
Fernanda Martins Rodrigues	f**a@w**u	39
R. Jay Mashl	r**l@w**u	21
Adam_D_Scott	a**t@w**u	13
Amila_Weerasinghe	a**a@w**u	3
Adam D Scott	a**t@g**u	2
mmoisse	m****e	2
Amila Weerasinghe	a**w@g**m	2
Adam David Scott	a**t@g**m	1

Committer domains:

Issue and Pull Request metadata

Last synced: 11 months ago

Total issues: 36
Total pull requests: 21
Average time to close issues: 3 months
Average time to close pull requests: about 1 month
Total issue authors: 26
Total pull request authors: 3
Average comments per issue: 1.81
Average comments per pull request: 0.29
Merged pull request: 13
Bot issues: 0
Bot pull requests: 0

Past year issues: 1
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 1
Past year pull request authors: 0
Past year average comments per issue: 0.0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/ding-lab/charger

Top Issue Authors

yubau1112 (4)
rescuz (4)
nah2025 (3)
mingoo426 (2)
NTNguyen13 (2)
abhayr20 (1)
yangyxt (1)
xuanzhu1213 (1)
TimmPKU (1)
thedam (1)
rhshah (1)
AdamDS (1)
paulhtyang (1)
oghzzang (1)
nrosewick (1)

Top Pull Request Authors

fernanda-rodrigues (13)
mmoisse (7)
icebert (1)

Top Issue Labels

BioMine-related-issue (2)
help wanted (2)
question (1)

Top Pull Request Labels

Package metadata

Total packages: 1
Total downloads:
- pypi: 64 last-month
Total dependent packages: 0
Total dependent repositories: 1
Total versions: 4
Total maintainers: 2

pypi.org: charger

Characterization of Germline variants

Homepage: https://github.com/ding-lab/CharGer
Documentation: https://charger.readthedocs.io/
Licenses: GPL-3.0
Latest release: 0.5.2 (published over 7 years ago)
Last Synced: 2024-06-06T20:55:53.016Z (11 months ago)
Versions: 4
Dependent Packages: 0
Dependent Repositories: 1
Downloads: 64 Last month
Rankings:
- Forks count: 6.341%
- Stargazers count: 7.424%
- Dependent packages count: 10.002%
- Average: 15.662%
- Dependent repos count: 21.718%
- Downloads: 32.823%
Maintainers (2)
- adamds
- lbwang2

Dependencies

poetry.lock pypi

alabaster 0.7.12 develop
atomicwrites 1.4.0 develop
babel 2.9.1 develop
backports.entry-points-selectable 1.1.0 develop
black 21.9b0 develop
certifi 2021.5.30 develop
cfgv 3.3.1 develop
charset-normalizer 2.0.6 develop
distlib 0.3.3 develop
docutils 0.17.1 develop
filelock 3.0.12 develop
flake8 3.9.2 develop
ghp-import 2.0.1 develop
identify 2.2.15 develop
idna 3.2 develop
imagesize 1.2.0 develop
iniconfig 1.1.1 develop
isort 5.9.3 develop
jinja2 3.0.1 develop
markupsafe 2.0.1 develop
mccabe 0.6.1 develop
mypy 0.910 develop
mypy-extensions 0.4.3 develop
nodeenv 1.6.0 develop
packaging 21.0 develop
pathspec 0.9.0 develop
platformdirs 2.3.0 develop
pluggy 1.0.0 develop
pre-commit 2.15.0 develop
py 1.10.0 develop
pycodestyle 2.7.0 develop
pyflakes 2.3.1 develop
pygments 2.10.0 develop
pyparsing 2.4.7 develop
pytest 6.2.5 develop
python-dateutil 2.8.2 develop
pytz 2021.1 develop
pyyaml 5.4.1 develop
regex 2021.8.28 develop
requests 2.26.0 develop
six 1.16.0 develop
snowballstemmer 2.1.0 develop
sphinx 4.2.0 develop
sphinx-argparse 0.3.1 develop
sphinx-issues 1.2.0 develop
sphinxcontrib-applehelp 1.0.2 develop
sphinxcontrib-devhelp 1.0.2 develop
sphinxcontrib-htmlhelp 2.0.0 develop
sphinxcontrib-jsmath 1.0.1 develop
sphinxcontrib-qthelp 1.0.3 develop
sphinxcontrib-serializinghtml 1.1.5 develop
toml 0.10.2 develop
tomli 1.2.1 develop
typed-ast 1.4.3 develop
urllib3 1.26.7 develop
virtualenv 20.8.0 develop
attrs 21.2.0
click 8.0.1
colorama 0.4.4
coloredlogs 15.0.1
cyvcf2 0.30.11
humanfriendly 10.0
importlib-metadata 1.7.0
loguru 0.5.3
numpy 1.21.1
pyreadline 2.1
pyreadline3 3.3
pysam 0.16.0.1
typing-extensions 3.10.0.2
win32-setctime 1.0.3
zipp 3.5.0

pyproject.toml pypi

black ^21.9b0 develop
flake8 ~3.9 develop
ghp-import ^2.0.1 develop
importlib_metadata ^1.5.0 develop
isort ^5.9.3 develop
mypy ^0.910 develop
pre-commit ^2.0.0 develop
pytest ^6.2.5 develop
sphinx ~4.2 develop
sphinx-argparse ^0.3.1 develop
sphinx-issues ^1.2.0 develop
attrs ^21.0
cyvcf2 ^0.30.0
loguru ~0.5
pysam ^0.16.0.1
python >=3.7,<4.0
typing-extensions ~3.10

Score: 11.237316880418973

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