https://github.com/genomicmedlab/cool-seq-tool
https://github.com/genomicmedlab/cool-seq-tool
Keywords
bioinformatics genomics
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
- Host: GitHub
- URL: https://github.com/genomicmedlab/cool-seq-tool
- Owner: GenomicMedLab
- License: mit
- Created: 2021-09-28T13:27:20.000Z (over 3 years ago)
- Default Branch: main
- Last Pushed: 2024-03-21T14:56:29.000Z (about 1 year ago)
- Last Synced: 2024-06-05T10:22:40.345Z (11 months ago)
- Topics: bioinformatics, genomics
- Language: Python
- Homepage: https://coolseqtool.readthedocs.io
- Size: 2.45 MB
- Stars: 4
- Watchers: 4
- Forks: 0
- Open Issues: 54
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
- Citation: CITATION.cff
Owner metadata
- Name: The Wagner/Chaudhari Laboratories at the Institute for Genomic Medicine
- Login: GenomicMedLab
- Email: [email protected]
- Kind: organization
- Description: The Wagner and Chaudhari Laboratories develop methods and tools for translating genomic variation in patients to clinical actionability
- Website: http://www.genomicmedlab.org
- Location: Columbus, Ohio
- Twitter: GenomicMedLab
- Company:
- Icon url: https://avatars.githubusercontent.com/u/67164091?v=4
- Repositories: 4
- Last ynced at: 2023-03-06T14:50:00.924Z
- Profile URL: https://github.com/GenomicMedLab
GitHub Events
Total
- Create event: 89
- Release event: 20
- Issues event: 117
- Watch event: 2
- Delete event: 60
- Member event: 1
- Issue comment event: 145
- Push event: 243
- Pull request review event: 158
- Pull request review comment event: 80
- Pull request event: 139
Last Year
- Create event: 82
- Delete event: 54
- Issue comment event: 136
- Issues event: 112
- Member event: 1
- Pull request event: 131
- Pull request review comment event: 78
- Pull request review event: 153
- Push event: 233
- Release event: 18
- Watch event: 2
Committers metadata
Last synced: over 1 year ago
Total Commits: 262
Total Committers: 5
Avg Commits per committer: 52.4
Development Distribution Score (DDS): 0.115
Commits in past year: 61
Committers in past year: 3
Avg Commits per committer in past year: 20.333
Development Distribution Score (DDS) in past year: 0.311
| Name | Commits | |
|---|---|---|
| korikuzma | k****a@g****m | 232 |
| James Stevenson | j****n@n****g | 24 |
| Kori Kuzma | 4****a | 3 |
| Alex H. Wagner, PhD | A****r@n****g | 2 |
| katie stahl | k****l@n****g | 1 |
Committer domains:
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 123
Total pull requests: 113
Average time to close issues: 3 months
Average time to close pull requests: 3 days
Total issue authors: 3
Total pull request authors: 5
Average comments per issue: 1.11
Average comments per pull request: 0.41
Merged pull request: 108
Bot issues: 0
Bot pull requests: 0
Past year issues: 70
Past year pull requests: 65
Past year average time to close issues: about 1 month
Past year average time to close pull requests: 5 days
Past year issue authors: 3
Past year pull request authors: 4
Past year average comments per issue: 1.03
Past year average comments per pull request: 0.58
Past year merged pull request: 60
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- korikuzma (82)
- jsstevenson (38)
- jarbesfeld (3)
Top Pull Request Authors
- korikuzma (77)
- jsstevenson (31)
- katiestahl (2)
- jarbesfeld (2)
- ahwagner (1)
Top Issue Labels
- priority:low (49)
- enhancement (38)
- priority:medium (29)
- technical debt (26)
- bug (20)
- priority:high (16)
- documentation (8)
- test (6)
- build (5)
- performance (5)
- cleanup (3)
- ci/cd (2)
- requirement (2)
- epic (1)
- VRS 2.0-alpha (1)
- wontfix (1)
Top Pull Request Labels
- priority:low (30)
- priority:medium (16)
- technical debt (12)
- priority:high (10)
- bug (8)
- build (8)
- enhancement (8)
- chore (3)
- documentation (2)
- cleanup (2)
- ci/cd (1)
- test (1)
- performance (1)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 2,116 last-month
- Total dependent packages: 2
- Total dependent repositories: 1
- Total versions: 21
- Total maintainers: 2
pypi.org: cool-seq-tool
Common Operations On Lots-of Sequences Tool.
- Homepage: https://github.com/GenomicMedLab/cool-seq-tool
- Documentation: https://cool-seq-tool.readthedocs.io/
- Licenses: MIT
- Latest release: 0.1.13 (published about 2 years ago)
- Last Synced: 2024-06-05T10:20:37.181Z (11 months ago)
- Versions: 21
- Dependent Packages: 2
- Dependent Repositories: 1
- Downloads: 2,116 Last month
-
Rankings:
- Dependent packages count: 3.077%
- Downloads: 9.708%
- Average: 17.524%
- Dependent repos count: 21.848%
- Stargazers count: 23.116%
- Forks count: 29.871%
- Maintainers (2)
Dependencies
- coverage * develop
- coveralls * develop
- flake8 * develop
- flake8-annotations * develop
- flake8-docstrings * develop
- flake8-import-order * develop
- flake8-quotes * develop
- ipython * develop
- jupyterlab * develop
- mock * develop
- pre-commit * develop
- psycopg2-binary * develop
- pytest * develop
- pytest-asyncio * develop
- pytest-cov * develop
- uta_tools * develop
- aiofiles *
- asyncpg *
- biocommons.seqrepo *
- boto3 *
- fastapi *
- gene-normalizer *
- hgvs *
- pandas *
- pydantic *
- pyliftover *
- uvicorn *
- ldez/gha-mjolnir v1.0.3 composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- chartboost/ruff-action v1 composite
- psf/black stable composite
Score: 13.329523877545201