https://github.com/bioforensics/microhapulator
Tools for empirical microhaplotype calling, forensic interpretation, and simulation.
https://github.com/bioforensics/microhapulator
Keywords
bioinformatics forensics hacktoberfest microhaplotypes ngs
Keywords from Contributors
conda package-management
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Tools for empirical microhaplotype calling, forensic interpretation, and simulation.
- Host: GitHub
- URL: https://github.com/bioforensics/microhapulator
- Owner: bioforensics
- License: other
- Created: 2018-10-10T14:50:09.000Z (over 6 years ago)
- Default Branch: main
- Last Pushed: 2024-05-22T13:37:24.000Z (12 months ago)
- Last Synced: 2024-05-22T14:52:32.301Z (12 months ago)
- Topics: bioinformatics, forensics, hacktoberfest, microhaplotypes, ngs
- Language: Python
- Homepage: https://microhapulator.readthedocs.io/
- Size: 10.9 MB
- Stars: 6
- Watchers: 4
- Forks: 1
- Open Issues: 7
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: .github/CONTRIBUTING.md
- License: LICENSE.txt
Owner metadata
- Name: bioforensics
- Login: bioforensics
- Email: [email protected]
- Kind: organization
- Description: The National Biodefense Analysis and Countermeasures Center (NBACC) is a one-of-a-kind facility dedicated to defending the nation against biological threats.
- Website: https://bnbi.org
- Location: Fort Detrick, MD
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/31353337?v=4
- Repositories: 7
- Last ynced at: 2023-03-02T05:40:25.588Z
- Profile URL: https://github.com/bioforensics
Committers metadata
Last synced: over 1 year ago
Total Commits: 227
Total Committers: 6
Avg Commits per committer: 37.833
Development Distribution Score (DDS): 0.639
Commits in past year: 21
Committers in past year: 1
Avg Commits per committer in past year: 21.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Daniel Standage | d****e@n****v | 82 |
| Daniel Standage | d****e@s****v | 79 |
| Daniel Standage | d****e@g****m | 52 |
| agshumate | a****e@g****m | 6 |
| Shumate | a****e@f****s | 5 |
| Alaina Shumate | a****e@s****v | 3 |
Committer domains:
Issue and Pull Request metadata
Last synced: 12 months ago
Total issues: 44
Total pull requests: 75
Average time to close issues: 5 months
Average time to close pull requests: 4 days
Total issue authors: 3
Total pull request authors: 2
Average comments per issue: 0.41
Average comments per pull request: 0.88
Merged pull request: 74
Bot issues: 0
Bot pull requests: 0
Past year issues: 5
Past year pull requests: 14
Past year average time to close issues: 3 months
Past year average time to close pull requests: 13 days
Past year issue authors: 2
Past year pull request authors: 2
Past year average comments per issue: 0.2
Past year average comments per pull request: 1.93
Past year merged pull request: 13
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- standage (40)
- agshumate (2)
- danejo3 (2)
Top Pull Request Authors
- standage (64)
- agshumate (11)
Top Issue Labels
- enhancement (11)
- bug (1)
- invalid (1)
Top Pull Request Labels
- enhancement (3)
- refactoring (3)
- bug (3)
- notebook (1)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 6 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 1
- Total maintainers: 1
pypi.org: microhapulator
Software package for simulating and analyzing microhaplotype sequence data
- Homepage: https://github.com/bioforensics/microhapulator
- Documentation: https://microhapulator.readthedocs.io/
- Licenses: BSD License
- Latest release: 0.4.1 (published over 5 years ago)
- Last Synced: 2024-05-22T14:54:08.265Z (12 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 6 Last month
-
Rankings:
- Dependent packages count: 10.027%
- Stargazers count: 21.508%
- Dependent repos count: 21.67%
- Forks count: 22.608%
- Average: 25.126%
- Downloads: 49.819%
- Maintainers (1)
Dependencies
- bash_kernel
- curl
- microhapulator >=0.6
- myst-parser *
- sphinx *
- sphinx-argparse *
- biopython *
- happer >=0.1
- insilicoseq >=1.5.2
- jsonschema >=4.0
- matplotlib >=3.0
- numpy >=1.19
- pandas >1.0
- scipy >=1.7
- snakemake >=6.0
- termgraph >=0.5
- tqdm >=4.0
- actions/checkout v1 composite
- actions/setup-python v1 composite
Score: 6.436150368369427