https://github.com/deeprank/deeprank2

An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.
https://github.com/deeprank/deeprank2

Keywords

convolutional-neural-networks deep-learning graph-neural-networks protein-protein-interfaces pytorch single-residue-variants structural-biology

Keywords from Contributors

measur animals archiving conversion annotation transforms token compose community ode

Last synced: 11 months ago
JSON representation

Acceptance Criteria

Revelant topics? true
External users? true
Open source license? true
Active? true
Fork? false

Repository metadata

An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.

Host: GitHub
URL: https://github.com/deeprank/deeprank2
Owner: DeepRank
License: apache-2.0
Created: 2022-01-21T13:12:57.000Z (over 3 years ago)
Default Branch: main
Last Pushed: 2024-06-06T15:06:05.000Z (11 months ago)
Last Synced: 2024-06-06T16:51:36.383Z (11 months ago)
Topics: convolutional-neural-networks, deep-learning, graph-neural-networks, protein-protein-interfaces, pytorch, single-residue-variants, structural-biology
Language: Python
Homepage: https://deeprank2.readthedocs.io/en/latest/?badge=latest
Size: 106 MB
Stars: 29
Watchers: 8
Forks: 10
Open Issues: 75
Releases: 0
Metadata Files:
- Readme: README.dev.md
- Changelog: CHANGELOG.md
- Contributing: CONTRIBUTING.rst
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.rst
- Citation: CITATION.cff

Owner metadata

Name: DeepRank
Login: DeepRank
Email:
Kind: organization
Description:
Website:
Location:
Twitter:
Company:
Icon url: https://avatars.githubusercontent.com/u/31408512?v=4
Repositories: 19
Last ynced at: 2024-05-06T00:03:19.394Z
Profile URL: https://github.com/DeepRank

GitHub Events

Total

Fork event: 1
Create event: 42
Commit comment event: 1
Release event: 5
Issues event: 85
Watch event: 12
Delete event: 49
Member event: 1
Issue comment event: 144
Push event: 430
Pull request review event: 214
Pull request review comment event: 233
Pull request event: 77

Last Year

Commit comment event: 1
Create event: 42
Delete event: 49
Fork event: 1
Issue comment event: 144
Issues event: 85
Member event: 1
Pull request event: 77
Pull request review comment event: 233
Pull request review event: 214
Push event: 430
Release event: 5
Watch event: 12

Committers metadata

Last synced: 12 months ago

Total Commits: 2,844
Total Committers: 37
Avg Commits per committer: 76.865
Development Distribution Score (DDS): 0.713

Commits in past year: 720
Committers in past year: 18
Avg Commits per committer in past year: 40.0
Development Distribution Score (DDS) in past year: 0.468

Name	Email	Commits
DaniBodor	d**r@e**l	817
gcroci2	c**a@g**m	752
manonreau	m**u@g**m	285
Coos Baakman	c**n@r**l	256
Giulia Crocioni	5****2	124
Nicolas Renaud	n**d@g**m	124
Joyce	j**6@g**m	93
cbaakman	c**n@u**l	52
Nicolas Renaud	n**d@t**l	45
Sven van der Burg	s**g@e**l	44
Chia Yu Lin	c**n@i**l	30
Giulia Crocioni	c**n@i**l	30
Chia Yu Lin	c**n@i**l	22
Giulia Crocioni	c**n@i**l	21
Daniel Rademaker	4****r	18
Manon F. Réau	m**u@i**x	15
Dani Bodor	d**r@e**l	13
Chia Yu Lin	c**n@s**l	13
Chia Yu Lin	c**n@i**l	12
Giulia Crocioni	c**n@i**l	12
Giulia Crocioni	c**n@i**l	11
Manon Réau	m**u@u**l	10
rgayatri	r****i	10
Giulia Crocioni	c**n@i**l	8
Giulia Crocioni	c**n@i**l	4
Manon F. Réau	m**u@i**x	4
Farzaneh Parizi	5****i	4
Coos Baakman	c**n@r**l	3
Jennifer Wei	9****i	2
Coos	c**n@g**m	2
and 7 more...

Committer domains:

Issue and Pull Request metadata

Last synced: 11 months ago

Total issues: 114
Total pull requests: 91
Average time to close issues: 2 months
Average time to close pull requests: 12 days
Total issue authors: 15
Total pull request authors: 8
Average comments per issue: 2.19
Average comments per pull request: 1.68
Merged pull request: 68
Bot issues: 0
Bot pull requests: 1

Past year issues: 89
Past year pull requests: 85
Past year average time to close issues: about 1 month
Past year average time to close pull requests: 8 days
Past year issue authors: 12
Past year pull request authors: 7
Past year average comments per issue: 1.56
Past year average comments per pull request: 1.35
Past year merged pull request: 65
Past year bot issues: 0
Past year bot pull requests: 1

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/deeprank/deeprank2

Top Issue Authors

gcroci2 (65)
DaniBodor (30)
DanLep97 (4)
lloydtripp (2)
Lsz-20 (2)
Max1461 (2)
abhishektiwari (1)
aminzia (1)
amjjbonvin (1)
DarioMarzella (1)
darnells (1)
DTRademaker (1)
elboyran (1)
rgayatri (1)
svenvanderburg (1)

Top Pull Request Authors

gcroci2 (52)
DaniBodor (28)
DarioMarzella (3)
joyceljy (2)
DanLep97 (2)
jnwei (2)
cbaakman (1)
dependabot[bot] (1)

Top Issue Labels

stale (51)
bug (18)
docs (14)
blocking (11)
needs info (11)
CI (10)
priority (9)
nice to have (9)
Query (9)
blocked (9)
feature (8)
disc (7)
Trainer (6)
tools (6)
testing (5)
good first issue (4)
Dataset (3)
covariates (3)
class diagram (3)
JOSS (3)
SS (1)
framework paper (1)
utils (1)
duplicate (1)

Top Pull Request Labels

stale (11)
JOSS (6)
SS (5)
bug (2)
Query (2)
docs (1)
class diagram (1)
dependencies (1)

Package metadata

Total packages: 1
Total downloads:
- pypi: 46 last-month
Total dependent packages: 0
Total dependent repositories: 0
Total versions: 6
Total maintainers: 1

pypi.org: deeprank2

DeepRank2 is an open-source deep learning framework for data mining of protein-protein interfaces or single-residue missense variants.

Homepage:
Documentation: https://deeprank2.readthedocs.io/en/latest/?badge=latest
Licenses: Apache-2.0 license
Latest release: 3.0.2 (published about 1 year ago)
Last Synced: 2024-06-06T16:58:15.426Z (11 months ago)
Versions: 6
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 46 Last month
Rankings:
- Dependent packages count: 7.366%
- Average: 38.093%
- Dependent repos count: 68.819%
Maintainers (1)
- gcroci2

Dependencies

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Dockerfile docker

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torch_cluster ==1.6.3
torch_scatter ==2.1.2
torch_sparse ==0.6.18
torch_spline_conv ==1.2.2

Score: 12.105456413495656

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