FIMS
A software system designed and architected to support next-generation fisheries stock assessment, ecosystem, and socioeconomic modeling.
https://github.com/noaa-fims/fims
Category: Biosphere
Sub Category: Marine Life and Fishery
Keywords
noaa-nsap r-package stock-assessment
Keywords from Contributors
fisheries fisheries-stock-assessment stock-synthesis latex noaa routing virtual transform crop control
Last synced: about 21 hours ago
JSON representation
Repository metadata
The repository for development of FIMS
- Host: GitHub
- URL: https://github.com/noaa-fims/fims
- Owner: NOAA-FIMS
- License: gpl-3.0
- Created: 2022-01-25T19:21:58.000Z (over 3 years ago)
- Default Branch: main
- Last Pushed: 2025-04-09T23:25:09.000Z (17 days ago)
- Last Synced: 2025-04-10T00:28:04.900Z (17 days ago)
- Topics: noaa-nsap, r-package, stock-assessment
- Language: C++
- Homepage: https://noaa-fims.github.io/FIMS/
- Size: 70.3 MB
- Stars: 24
- Watchers: 16
- Forks: 16
- Open Issues: 106
- Releases: 4
-
Metadata Files:
- Readme: README.md
- Changelog: NEWS.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
README.md
Overview
The repository for development of FIMS.
The NOAA Fisheries Integrated Modeling System is a software system designed to support next-generation fisheries stock assessment, ecosystem, and socioeconomic modeling. A team of experts within NOAA Fisheries is designing and developing the system, and we are advised by the FIMS Council which includes academic, industry, and international partners. The roles of internal and external collaborators are outlined in the governance section of our developer guide. We plan to have an operational software system that is released to the public in 2023. In the meantime, users and developers are welcome to submit feedback using Github issues. Please use the issues under collaborative workflow to make suggestions about the developer guide and the issues under the FIMS software repo for software design and development feedback. You can follow the team discussion here.
Installing from R
Install the latest precompiled version FIMS from R universe within R:
install.packages("FIMS", repos = c("https://noaa-fims.r-universe.dev", "https://cloud.r-project.org"))
Local Install for Developers
Follow instructions in the Collaborative Workflow Chapter on Developer Software and Installation.
Getting Help
Please report bugs along with a minimal reproducible example on github issues
Code of Conduct
All contributors participating and contributing to the FIMS project are expected to adhere to the FIMS Code of Conduct
Contributors
NOAA Disclaimer
This repository is a scientific product and is not official communication of the National Oceanic and Atmospheric Administration, or the United States Department of Commerce. All NOAA GitHub project code is provided on an 'as is' basis and the user assumes responsibility for its use. Any claims against the Department of Commerce or Department of Commerce bureaus stemming from the use of this GitHub project will be governed by all applicable Federal law. Any reference to specific commercial products, processes, or services by service mark, trademark, manufacturer, or otherwise, does not constitute or imply their endorsement, recommendation or favoring by the Department of Commerce. The Department of Commerce seal and logo, or the seal and logo of a DOC bureau, shall not be used in any manner to imply endorsement of any commercial product or activity by DOC or the United States Government.
Software code created by U.S. Government employees is not subject to copyright in the United States (17 U.S.C. section 105). The United States/Department of Commerce reserve all rights to seek and obtain copyright protection in countries other than the United States for Software authored in its entirety by the Department of Commerce. To this end, the Department of Commerce hereby grants to Recipient a royalty-free, nonexclusive license to use, copy, and create derivative works of the Software outside of the United States.
U.S. Department of Commerce | National Oceanographic and Atmospheric Administration | NOAA Fisheries
Owner metadata
- Name: NOAA-FIMS
- Login: NOAA-FIMS
- Email:
- Kind: organization
- Description:
- Website:
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/79874876?v=4
- Repositories: 13
- Last ynced at: 2023-03-05T20:38:40.115Z
- Profile URL: https://github.com/NOAA-FIMS
GitHub Events
Total
- Create event: 103
- Commit comment event: 15
- Release event: 2
- Issues event: 59
- Watch event: 8
- Delete event: 98
- Issue comment event: 412
- Push event: 559
- Pull request event: 155
- Pull request review comment event: 245
- Pull request review event: 279
- Fork event: 8
Last Year
- Create event: 103
- Commit comment event: 15
- Release event: 2
- Issues event: 59
- Watch event: 8
- Delete event: 98
- Issue comment event: 412
- Push event: 559
- Pull request event: 155
- Pull request review comment event: 245
- Pull request review event: 279
- Fork event: 8
Committers metadata
Last synced: 4 days ago
Total Commits: 1,248
Total Committers: 18
Avg Commits per committer: 69.333
Development Distribution Score (DDS): 0.682
Commits in past year: 43
Committers in past year: 7
Avg Commits per committer in past year: 6.143
Development Distribution Score (DDS) in past year: 0.744
| Name | Commits | |
|---|---|---|
| Christine Stawitz - NOAA | 4****A | 397 |
| Andrea-Havron-NOAA | a****n@n****v | 205 |
| Bai Li | b****i@n****v | 191 |
| Matthew-Supernaw-NOAA | m****w@n****v | 154 |
| Kathryn Doering | k****g@n****v | 105 |
| github-actions[bot] | 4****] | 68 |
| Nathan Vaughan | n****n@n****v | 37 |
| kellijohnson-NOAA | k****n@n****v | 31 |
| Christine.Stawitz | c****z | 22 |
| Jane Sullivan | j****n@n****v | 13 |
| Jon Kenton Tarsus Brodziak | j****k@n****v | 6 |
| MOshima-PIFSC | m****a@n****v | 6 |
| Ian Taylor | i****r@n****v | 4 |
| peterkuriyama-NOAA | 1****A | 3 |
| KyleShertzer-NOAA | 8****A | 2 |
| timjmiller | t****r@n****v | 2 |
| Kelli.Johnson | 1****2@m****l | 1 |
| Bai.Li | B****i@n****l | 1 |
Committer domains:
- noaa.gov: 11
Issue and Pull Request metadata
Last synced: 2 days ago
Total issues: 475
Total pull requests: 236
Average time to close issues: 5 months
Average time to close pull requests: 8 days
Total issue authors: 17
Total pull request authors: 19
Average comments per issue: 3.85
Average comments per pull request: 3.53
Merged pull request: 169
Bot issues: 0
Bot pull requests: 6
Past year issues: 134
Past year pull requests: 159
Past year average time to close issues: 3 months
Past year average time to close pull requests: 8 days
Past year issue authors: 10
Past year pull request authors: 18
Past year average comments per issue: 2.33
Past year average comments per pull request: 3.22
Past year merged pull request: 102
Past year bot issues: 0
Past year bot pull requests: 6
Top Issue Authors
- ChristineStawitz-NOAA (115)
- Andrea-Havron-NOAA (94)
- Bai-Li-NOAA (84)
- kellijohnson-NOAA (65)
- k-doering-NOAA (50)
- JaneSullivan-NOAA (19)
- msupernaw (15)
- Cole-Monnahan-NOAA (6)
- nathanvaughan-NOAA (6)
- iantaylor-NOAA (6)
- KyleShertzer-NOAA (4)
- JonBrodziak (3)
- Andrea-Havron (2)
- Ovec8hkin (2)
- cmlegault (2)
Top Pull Request Authors
- ChristineStawitz-NOAA (63)
- Bai-Li-NOAA (44)
- Andrea-Havron-NOAA (35)
- kellijohnson-NOAA (29)
- k-doering-NOAA (25)
- nathanvaughan-NOAA (7)
- github-actions[bot] (6)
- msupernaw (4)
- MOshima-PIFSC (4)
- peterkuriyama-NOAA (3)
- Srajald (3)
- iantaylor-NOAA (3)
- RicardoYin01 (2)
- JaneSullivan-NOAA (2)
- JonBrodziak (2)
Top Issue Labels
- kind: feature (134)
- kind: refactor (95)
- P3 (65)
- kind: bug (59)
- theme: code cleanup (56)
- theme: NLL refactor (53)
- theme: more features (48)
- status: wishlist (45)
- status: triage_needed (45)
- kind: documentation (45)
- status: needs discussion (40)
- P2 (40)
- kind: question (34)
- theme: documentation (32)
- P1 (29)
- status: in progress (28)
- attribute: low hanging 🍎 (25)
- status: help wanted (25)
- theme: R interface (22)
- attribute: needs discussion (22)
- theme: r interface (21)
- attribute: case study features (21)
- low hanging 🍎 (20)
- kind: test case (12)
- attribute: good first issue (10)
- sprint 1 (10)
- theme: pilot studies (7)
- case study features (5)
- kind: vignette (5)
- ro-hackathon-2025 (3)
Top Pull Request Labels
- P3 (10)
- theme: code cleanup (9)
- kind: bug (9)
- kind: documentation (7)
- kind: refactor (7)
- auto-update (6)
- theme: documentation (4)
- theme: R interface (3)
- vignette (2)
- kind: feature (2)
- attribute: low hanging 🍎 (1)
- theme: more features (1)
- status: in progress (1)
Dependencies
- R >= 3.4 depends
- Rcpp * imports
- TMB >= 1.8.0 imports
- usethis * imports
- covr * suggests
- testthat >= 3.0.0 suggests
- actions/checkout v3 composite
- dmnemec/copy_file_to_another_repo_action main composite
- actions/checkout v3 composite
- actions/checkout v3 composite
- actions/github-script 0.3.0 composite
- DoozyX/clang-format-lint-action v0.14 composite
- actions/checkout v3 composite
- peter-evans/create-pull-request v4 composite
- actions/checkout v3 composite
- actions/checkout v3 composite
- actions/upload-artifact v3 composite
- codecov/codecov-action v3 composite
- seanmiddleditch/gha-setup-ninja master composite
- actions/checkout v3 composite
- actions/upload-artifact v3 composite
- codecov/codecov-action v3 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
Score: 7.757906208351747