https://github.com/Gabaldonlab/redundans
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
https://github.com/Gabaldonlab/redundans
Keywords
assembled-contigs assembly bioinformatics closing contigs docker-image fasta gap genome-assembly genomics heterozygous mate-pairs paired-end pipeline polymorphic python scaffolding
Keywords from Contributors
conda routing
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
- Host: GitHub
- URL: https://github.com/Gabaldonlab/redundans
- Owner: Gabaldonlab
- License: gpl-3.0
- Created: 2015-04-07T13:17:59.000Z (about 10 years ago)
- Default Branch: master
- Last Pushed: 2023-12-15T13:32:22.000Z (over 1 year ago)
- Last Synced: 2024-05-04T08:24:03.485Z (about 1 year ago)
- Topics: assembled-contigs, assembly, bioinformatics, closing, contigs, docker-image, fasta, gap, genome-assembly, genomics, heterozygous, mate-pairs, paired-end, pipeline, polymorphic, python, scaffolding
- Language: C++
- Homepage:
- Size: 63.7 MB
- Stars: 123
- Watchers: 8
- Forks: 19
- Open Issues: 0
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Owner metadata
- Name: Gabaldon lab
- Login: Gabaldonlab
- Email: [email protected]
- Kind: organization
- Description: Github repository of Gabaldon lab
- Website: http://cgenomics.org/
- Location: Barcelona
- Twitter: gabaldonlab
- Company:
- Icon url: https://avatars.githubusercontent.com/u/9263059?v=4
- Repositories: 23
- Last ynced at: 2023-02-26T16:40:39.792Z
- Profile URL: https://github.com/Gabaldonlab
GitHub Events
Total
- Fork event: 13
- Create event: 16
- Commit comment event: 2
- Issues event: 56
- Release event: 6
- Watch event: 81
- Delete event: 5
- Member event: 1
- Issue comment event: 65
- Push event: 78
- Public event: 1
- Pull request event: 11
Last Year
- Commit comment event: 2
- Create event: 8
- Delete event: 3
- Fork event: 2
- Issue comment event: 30
- Issues event: 16
- Member event: 1
- Pull request event: 6
- Push event: 27
- Release event: 5
- Watch event: 27
Committers metadata
Last synced: about 1 year ago
Total Commits: 560
Total Committers: 12
Avg Commits per committer: 46.667
Development Distribution Score (DDS): 0.343
Commits in past year: 30
Committers in past year: 4
Avg Commits per committer in past year: 7.5
Development Distribution Score (DDS) in past year: 0.2
| Name | Commits | |
|---|---|---|
| lpryszcz | l****z@g****m | 368 |
| Leszek Pryszcz | l****z@i****0 | 131 |
| Diego Fuentes Palacios | 4****a | 26 |
| dfupa | d****a@g****m | 13 |
| dfuentes | d****s@g****m | 12 |
| Leszek Pryszcz | l****z@i****l | 4 |
| Jason Stajich | j****h@u****u | 1 |
| Leszek | l****z@c****s | 1 |
| Leszek | l****z@m****s | 1 |
| Will Aoki | w****i@u****u | 1 |
| lpryszcz | l****z@s****l | 1 |
| GitHub Action | a****n@g****m | 1 |
Committer domains:
- github.com: 1
- solaris.iimcb.gov.pl: 1
- umnh.utah.edu: 1
- crg.es: 1
- ucr.edu: 1
- iimcb.gov.pl: 1
Issue and Pull Request metadata
Last synced: over 1 year ago
Total issues: 102
Total pull requests: 6
Average time to close issues: 9 months
Average time to close pull requests: about 1 year
Total issue authors: 74
Total pull request authors: 3
Average comments per issue: 2.12
Average comments per pull request: 0.17
Merged pull request: 4
Bot issues: 0
Bot pull requests: 0
Past year issues: 9
Past year pull requests: 3
Past year average time to close issues: 18 days
Past year average time to close pull requests: 7 minutes
Past year issue authors: 7
Past year pull request authors: 1
Past year average comments per issue: 3.33
Past year average comments per pull request: 0.0
Past year merged pull request: 3
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- mictadlo (9)
- lpryszcz (8)
- ptranvan (4)
- aabaricalla (3)
- Kata-Pa (2)
- maxmaronna (2)
- eburgueno (2)
- DaniPaulo (2)
- thackl (2)
- AMMMachado (2)
- apelin20 (2)
- waoki (2)
- LucieGL (1)
- mamtamasand (1)
- marco91sol (1)
Top Pull Request Authors
- Dfupa (3)
- waoki (2)
- mictadlo (1)
Top Issue Labels
- enhancement (14)
- bug (5)
- stale (3)
- question (3)
- close (2)
- Thanks (2)
- wontfix (1)
- noreply (1)
- invalid (1)
- duplicate (1)
- help wanted (1)
- closed (1)
Top Pull Request Labels
- enhancement (1)
Package metadata
- Total packages: 1
- Total downloads: unknown
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 2
spack.io: redundans
Redundans pipeline assists an assembly of heterozygous genomes.
- Homepage: https://github.com/Gabaldonlab/redundans
- Licenses: []
- Latest release: 0.13c (published about 3 years ago)
- Last Synced: 2024-06-04T23:02:35.011Z (11 months ago)
- Versions: 2
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Stargazers count: 17.952%
- Forks count: 20.536%
- Average: 23.941%
- Dependent packages count: 57.274%
Dependencies
- actions/checkout v2 composite
- ad-m/github-push-action master composite
- actions/stale v3 composite
- python 3.9.1 build
- actions/checkout v4 composite
- actions/checkout v3 composite
- actions/setup-python v3 composite
Score: -Infinity