https://github.com/bihealth/vcfpy
Python 3 library with good support for both reading and writing VCF
https://github.com/bihealth/vcfpy
Keywords
bioinformatics file-format parsing vcf writing
Keywords from Contributors
variant-filtration genetics varfish variant-prioritization variant-annotation ontology reproducibility batteries simulations
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Python 3 library with good support for both reading and writing VCF
- Host: GitHub
- URL: https://github.com/bihealth/vcfpy
- Owner: bihealth
- License: mit
- Created: 2016-09-15T07:59:19.000Z (over 8 years ago)
- Default Branch: main
- Last Pushed: 2024-03-20T16:59:28.000Z (about 1 year ago)
- Last Synced: 2024-06-04T11:24:37.907Z (11 months ago)
- Topics: bioinformatics, file-format, parsing, vcf, writing
- Language: Python
- Homepage:
- Size: 1.25 MB
- Stars: 87
- Watchers: 6
- Forks: 18
- Open Issues: 11
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: CONTRIBUTING.rst
- License: LICENSE
- Authors: AUTHORS.rst
Owner metadata
- Name: Berlin Institute of Health
- Login: bihealth
- Email:
- Kind: organization
- Description: BIH Core Unit Bioinformatics & BIH HPC IT
- Website: https://www.cubi.bihealth.org/
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/11364301?v=4
- Repositories: 215
- Last ynced at: 2024-04-16T02:59:21.051Z
- Profile URL: https://github.com/bihealth
GitHub Events
Total
- Create event: 153
- Release event: 6
- Issues event: 87
- Watch event: 74
- Delete event: 112
- Member event: 1
- Issue comment event: 103
- Push event: 306
- Pull request event: 239
- Fork event: 18
Last Year
- Create event: 16
- Delete event: 12
- Fork event: 6
- Issue comment event: 7
- Issues event: 7
- Pull request event: 22
- Push event: 23
- Release event: 5
- Watch event: 14
Committers metadata
Last synced: 11 months ago
Total Commits: 209
Total Committers: 8
Avg Commits per committer: 26.125
Development Distribution Score (DDS): 0.287
Commits in past year: 5
Committers in past year: 2
Avg Commits per committer in past year: 2.5
Development Distribution Score (DDS) in past year: 0.4
| Name | Commits | |
|---|---|---|
| Manuel Holtgrewe | m****e@b****e | 149 |
| Manuel Holtgrewe | z****i@g****m | 28 |
| pyup-bot | g****t@p****o | 22 |
| Manuel Holtgrewe | m****e@b****e | 5 |
| varfish-bot | 1****t | 2 |
| Katie Chen | k****n@g****m | 1 |
| Arfon Smith | a****n | 1 |
| hylkedonker | 4****r | 1 |
Committer domains:
- bih-charite.de: 1
- pyup.io: 1
- bihealth.de: 1
Issue and Pull Request metadata
Last synced: over 1 year ago
Total issues: 30
Total pull requests: 86
Average time to close issues: 3 months
Average time to close pull requests: 22 days
Total issue authors: 25
Total pull request authors: 7
Average comments per issue: 1.6
Average comments per pull request: 0.6
Merged pull request: 18
Bot issues: 0
Bot pull requests: 0
Past year issues: 5
Past year pull requests: 12
Past year average time to close issues: about 2 months
Past year average time to close pull requests: 2 days
Past year issue authors: 5
Past year pull request authors: 3
Past year average comments per issue: 0.4
Past year average comments per pull request: 0.5
Past year merged pull request: 10
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- holtgrewe (4)
- stolpeo (2)
- parlar (2)
- Vic-s (1)
- susannasiebert (1)
- smrgit (1)
- ShadiKhoury (1)
- SAI-EL (1)
- rvanheusden (1)
- robertopreste (1)
- oyhel (1)
- ok-gitr (1)
- marissa97 (1)
- luederm (1)
- lczech (1)
Top Pull Request Authors
- pyup-bot (67)
- holtgrewe (9)
- varfish-bot (6)
- effigies (1)
- robertopreste (1)
- k8iechen (1)
- hylkedonker (1)
Top Issue Labels
Top Pull Request Labels
- autorelease: tagged (5)
- autorelease: pending (1)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 4,901 last-month
- Total docker downloads: 675
- Total dependent packages: 14
- Total dependent repositories: 37
- Total versions: 27
- Total maintainers: 1
pypi.org: vcfpy
Python 3 VCF library with good support for both reading and writing
- Homepage: https://github.com/bihealth/vcfpy
- Documentation: https://vcfpy.readthedocs.io/
- Licenses: MIT license
- Latest release: 0.13.8 (published over 1 year ago)
- Last Synced: 2024-06-03T19:02:54.206Z (11 months ago)
- Versions: 27
- Dependent Packages: 14
- Dependent Repositories: 37
- Downloads: 4,901 Last month
- Docker Downloads: 675
-
Rankings:
- Dependent packages count: 0.951%
- Dependent repos count: 2.411%
- Docker downloads count: 2.78%
- Downloads: 4.657%
- Average: 4.721%
- Stargazers count: 7.955%
- Forks count: 9.572%
- Maintainers (1)
Dependencies
- pysam >=0.10.0
- Babel >=2.3.4 development
- Jinja2 >=2.9.5 development
- MarkupSafe >=0.23 development
- Pygments >=2.2.0 development
- Sphinx >=1.5.2 development
- alabaster >=0.7.9 development
- docutils >=0.13.1 development
- imagesize >=0.7.1 development
- pytest-sugar >=0.8.0 development
- pytz >=2016.10 development
- requests >=2.13.0 development
- six >=1.10.0 development
- snowballstemmer >=1.2.1 development
- termcolor >=1.1.0 development
- twine >=1.12.1 development
- cyordereddict >=1.0.0
- apipkg >=1.4 test
- codacy-coverage >=1.3.6 test
- coverage >=4.3.4 test
- execnet >=1.4.1 test
- flake8 >=3.6.0 test
- py >=1.4.32 test
- pytest >=3.0.6 test
- pytest-cache >=1.0 test
- pytest-cov >=2.4.0 test
- black ==22.3.0 test
- actions/checkout v1 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- khan/pull-request-workflow-cancel 1.0.0 composite
- marocchino/sticky-pull-request-comment v1.1.0 composite
- amannn/action-semantic-pull-request v3.4.0 composite
- GoogleCloudPlatform/release-please-action v3 composite
- actions/checkout v2 composite
- actions/setup-python v4 composite
- pypa/gh-action-pypi-publish master composite
Score: 15.300628918188286