https://github.com/weng-lab/umitools
A toolset for handling sequencing data with unique molecular identifiers (UMIs)
https://github.com/weng-lab/umitools
Keywords
bioinformatics high-throughput-sequencing rna-seq small-rna umi unique-molecular-identifier
Last synced: about 1 year ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
A toolset for handling sequencing data with unique molecular identifiers (UMIs)
- Host: GitHub
- URL: https://github.com/weng-lab/umitools
- Owner: weng-lab
- License: other
- Created: 2016-02-16T03:14:20.000Z (over 9 years ago)
- Default Branch: master
- Last Pushed: 2018-07-13T13:54:45.000Z (almost 7 years ago)
- Last Synced: 2024-04-20T21:07:43.347Z (about 1 year ago)
- Topics: bioinformatics, high-throughput-sequencing, rna-seq, small-rna, umi, unique-molecular-identifier
- Language: Python
- Size: 16.6 MB
- Stars: 14
- Watchers: 8
- Forks: 3
- Open Issues: 1
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE.txt
Owner metadata
- Name: Weng Lab
- Login: weng-lab
- Email:
- Kind: organization
- Description: Zhiping Weng's lab at UMASS Medical School
- Website: https://www.umassmed.edu/zlab/
- Location: Worcester, MA, USA
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/4086293?v=4
- Repositories: 99
- Last ynced at: 2023-08-03T19:05:13.744Z
- Profile URL: https://github.com/weng-lab
GitHub Events
Total
- Issues event: 9
- Watch event: 13
- Issue comment event: 6
- Push event: 21
- Public event: 1
- Fork event: 5
Last Year
- Fork event: 2
- Issue comment event: 2
- Issues event: 3
- Watch event: 2
Committers metadata
Last synced: about 1 year ago
Total Commits: 117
Total Committers: 3
Avg Commits per committer: 39.0
Development Distribution Score (DDS): 0.342
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Yu Fu | y****u@y****e | 77 |
| Yu Fu | y****u | 38 |
| Yu Fu | f****2@z****g | 2 |
Committer domains:
Issue and Pull Request metadata
Last synced: over 1 year ago
Total issues: 7
Total pull requests: 0
Average time to close issues: 7 days
Average time to close pull requests: N/A
Total issue authors: 7
Total pull request authors: 0
Average comments per issue: 1.14
Average comments per pull request: 0
Merged pull request: 0
Bot issues: 0
Bot pull requests: 0
Past year issues: 2
Past year pull requests: 0
Past year average time to close issues: 9 days
Past year average time to close pull requests: N/A
Past year issue authors: 2
Past year pull request authors: 0
Past year average comments per issue: 1.0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- dnchenchen (1)
- emattei (1)
- huangl07 (1)
- jowodo (1)
- k3yavi (1)
- turningA (1)
- unique379r (1)
Top Pull Request Authors
Top Issue Labels
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 64 last-month
- Total dependent packages: 0
- Total dependent repositories: 2
- Total versions: 3
- Total maintainers: 1
pypi.org: umitools
A toolset for handling sequencing data with unique molecular identifiers (UMIs)
- Homepage: https://github.com/weng-lab/umitools
- Documentation: https://umitools.readthedocs.io/
- Licenses: GPLv3
- Latest release: 0.3.4 (published about 7 years ago)
- Last Synced: 2024-05-31T05:20:57.245Z (about 1 year ago)
- Versions: 3
- Dependent Packages: 0
- Dependent Repositories: 2
- Downloads: 64 Last month
-
Rankings:
- Dependent packages count: 9.995%
- Dependent repos count: 11.619%
- Stargazers count: 16.017%
- Forks count: 19.135%
- Average: 20.085%
- Downloads: 43.658%
- Maintainers (1)
Dependencies
- editdistance *
- networkx *
- pysam *
Score: 8.011355109161286