https://github.com/naturalis/barcode-constrained-phylogeny
Pipeline for building topologically-constrained phylogenies from DNA barcode data
https://github.com/naturalis/barcode-constrained-phylogeny
Keywords
dna-barcoding metabarcoding phylogenetic-diversity phylogenetic-placement phylogenetics
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Pipeline for building topologically-constrained phylogenies from DNA barcode data
- Host: GitHub
- URL: https://github.com/naturalis/barcode-constrained-phylogeny
- Owner: naturalis
- License: apache-2.0
- Created: 2022-12-21T10:32:14.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2024-04-12T14:56:46.000Z (about 1 year ago)
- Last Synced: 2024-04-12T22:25:10.683Z (about 1 year ago)
- Topics: dna-barcoding, metabarcoding, phylogenetic-diversity, phylogenetic-placement, phylogenetics
- Language: Python
- Homepage: https://naturalis.github.io/barcode-constrained-phylogeny/
- Size: 3.32 MB
- Stars: 1
- Watchers: 9
- Forks: 3
- Open Issues: 6
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE.md
- Code of conduct: CODE_OF_CONDUCT.md
Owner metadata
- Name: Naturalis Biodiversity Center
- Login: naturalis
- Email:
- Kind: organization
- Description:
- Website: https://www.naturalis.nl
- Location: Leiden, the Netherlands
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/1404630?v=4
- Repositories: 79
- Last ynced at: 2023-03-22T14:38:28.438Z
- Profile URL: https://github.com/naturalis
GitHub Events
Total
- Create event: 39
- Release event: 2
- Issues event: 122
- Watch event: 1
- Delete event: 34
- Issue comment event: 83
- Member event: 6
- Push event: 326
- Pull request event: 66
- Fork event: 2
Last Year
- Create event: 17
- Delete event: 15
- Fork event: 2
- Issue comment event: 54
- Issues event: 78
- Member event: 4
- Pull request event: 24
- Push event: 180
- Release event: 1
Committers metadata
Last synced: about 1 year ago
Total Commits: 402
Total Committers: 7
Avg Commits per committer: 57.429
Development Distribution Score (DDS): 0.348
Commits in past year: 353
Committers in past year: 6
Avg Commits per committer in past year: 58.833
Development Distribution Score (DDS) in past year: 0.263
| Name | Commits | |
|---|---|---|
| Rutger Vos | r****o@g****m | 262 |
| NI-S | n****r@g****m | 63 |
| Naomi | n****s@h****m | 37 |
| Naomi van Es | 7****s | 33 |
| JWesseling | 1****g | 3 |
| Noah | n****g@l****l | 2 |
| AnnemiekeSchonthaler | 4****r | 2 |
Committer domains:
- live.nl: 1
Issue and Pull Request metadata
Last synced: over 1 year ago
Total issues: 46
Total pull requests: 34
Average time to close issues: about 2 months
Average time to close pull requests: 7 minutes
Total issue authors: 2
Total pull request authors: 2
Average comments per issue: 1.09
Average comments per pull request: 0.0
Merged pull request: 31
Bot issues: 0
Bot pull requests: 0
Past year issues: 42
Past year pull requests: 33
Past year average time to close issues: about 2 months
Past year average time to close pull requests: 8 minutes
Past year issue authors: 2
Past year pull request authors: 2
Past year average comments per issue: 1.1
Past year average comments per pull request: 0.0
Past year merged pull request: 30
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- rvosa (24)
- Naomivanes (22)
Top Pull Request Authors
- Naomivanes (24)
- NI-S (10)
Top Issue Labels
- to_do (12)
- bug (8)
- documentation (4)
- question (3)
- enhancement (1)
Top Pull Request Labels
Dependencies
- actions/checkout v3 composite
- actions/setup-python v3 composite
- biopython *
- numpy *
- pandas *
- requests *
Score: 3.8918202981106265