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https://github.com/paccmann/paccmann_datasets

pytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.github.io/paccmann_datasets/
https://github.com/paccmann/paccmann_datasets

Keywords

bioinformatics chemoinformatics deep-learning python pytorch rdkit smiles

Keywords from Contributors

chemistry language-model transformer benchmarks tracking

Last synced: 11 months ago
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Repository metadata

pytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.github.io/paccmann_datasets/

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Last synced: over 1 year ago

Total Commits: 222
Total Committers: 14
Avg Commits per committer: 15.857
Development Distribution Score (DDS): 0.536

Commits in past year: 3
Committers in past year: 2
Avg Commits per committer in past year: 1.5
Development Distribution Score (DDS) in past year: 0.333

Name Email Commits
Jannis Born j****b@z****m 103
pyup.io bot g****t@p****o 39
Jannis Born j****n@g****e 28
Matteo Manica d****g@g****m 19
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Nikita Janakarajan n****7@g****m 3
Joris Cadow d****w@z****m 3
nja n****a@z****m 1
Nikita Janakarajan N****A@z****m 1
annaweber209 5****9 1
Nil Adell Mill n****1@g****m 1

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Issue and Pull Request metadata

Last synced: 12 months ago

Total issues: 23
Total pull requests: 78
Average time to close issues: 6 months
Average time to close pull requests: 11 days
Total issue authors: 7
Total pull request authors: 9
Average comments per issue: 1.7
Average comments per pull request: 0.76
Merged pull request: 47
Bot issues: 0
Bot pull requests: 0

Past year issues: 0
Past year pull requests: 1
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 0
Past year pull request authors: 1
Past year average comments per issue: 0
Past year average comments per pull request: 0.0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/paccmann/paccmann_datasets

Top Issue Authors

  • jannisborn (12)
  • C-nit (4)
  • drugilsberg (3)
  • annaweber209 (1)
  • hmkim (1)
  • niladell (1)
  • YoelShoshan (1)

Top Pull Request Authors

  • pyup-bot (38)
  • jannisborn (27)
  • C-nit (6)
  • niklexical (2)
  • annaweber209 (1)
  • YoelShoshan (1)
  • niladell (1)
  • drugilsberg (1)
  • M4kxjcxv (1)

Top Issue Labels

  • invalid (9)
  • enhancement (9)
  • wontfix (3)
  • good first issue (3)
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  • bug (2)
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Top Pull Request Labels

  • enhancement (8)
  • invalid (3)
  • documentation (2)
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Package metadata

pypi.org: pytoda

pytoda: PaccMann PyTorch Dataset Classes.

  • Homepage: https://github.com/PaccMann/paccmann_datasets
  • Documentation: https://pytoda.readthedocs.io/
  • Licenses: MIT
  • Latest release: 1.1.4 (published about 1 year ago)
  • Last Synced: 2024-05-17T11:52:10.776Z (12 months ago)
  • Versions: 8
  • Dependent Packages: 0
  • Dependent Repositories: 5
  • Downloads: 113 Last month
  • Rankings:
    • Dependent repos count: 6.609%
    • Dependent packages count: 10.109%
    • Average: 11.625%
    • Stargazers count: 12.489%
    • Forks count: 13.345%
    • Downloads: 15.575%
  • Maintainers (1)

Dependencies

dev_requirements.txt pypi
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  • flask_login ==0.5.0 development
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  • myst-parser ==0.13.3 development
  • pytest ==6.1.1 development
  • pytest-cov ==2.10.1 development
  • six ==1.15.0 development
  • sphinx ==3.4.3 development
  • sphinx-autodoc-typehints ==1.11.1 development
  • sphinx_rtd_theme ==0.5.1 development
requirements.txt pypi
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  • SmilesPE >=0.0.3
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  • selfies >=2.0.0
  • torch >=1.4.0,<1.9
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setup.py pypi
  • SmilesPE >=0.0.3
  • Unidecode *
  • dill >=0.3.3
  • diskcache *
  • importlib_resources *
  • numpy *
  • pandas *
  • pubchempy *
  • pyfaidx *
  • rdkit-pypi >=2021.9.3
  • scikit-learn *
  • selfies >=2.0.0
  • torch >=1.4.0
  • upfp *
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Score: 10.637056647594989