https://github.com/baranzinilab/kg_rag

Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks
https://github.com/baranzinilab/kg_rag

Keywords

bert-models bioinformatics bioinformatics-algorithms biomedical-applications biomedical-informatics context-aware gpt gpt35turbo gpt4 knowledge-base knowledge-graph large-language-models llama llama2 llm prompt-engineering prompt-tuning rag retrieval-augmented-generation sentence-transformers

Keywords from Contributors

transforms vectors

Last synced: 11 months ago
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Acceptance Criteria

Repository metadata

Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks


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GitHub Events

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Committers metadata

Last synced: about 1 year ago

Total Commits: 553
Total Committers: 6
Avg Commits per committer: 92.167
Development Distribution Score (DDS): 0.116

Commits in past year: 553
Committers in past year: 6
Avg Commits per committer in past year: 92.167
Development Distribution Score (DDS) in past year: 0.116

Name Email Commits
Karthik Soman k****n@g****m 489
karthik-soman 4****n 56
Nada Amin n****n@s****u 4
Jarlor Zhang z****2@o****m 2
Karthik Soman k****n@l****u 1
Ikko Eltociear Ashimine e****r@g****m 1

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Issue and Pull Request metadata

Last synced: about 1 year ago

Total issues: 10
Total pull requests: 10
Average time to close issues: 11 days
Average time to close pull requests: 1 day
Total issue authors: 8
Total pull request authors: 4
Average comments per issue: 4.9
Average comments per pull request: 0.3
Merged pull request: 10
Bot issues: 0
Bot pull requests: 0

Past year issues: 10
Past year pull requests: 10
Past year average time to close issues: 11 days
Past year average time to close pull requests: 1 day
Past year issue authors: 8
Past year pull request authors: 4
Past year average comments per issue: 4.9
Past year average comments per pull request: 0.3
Past year merged pull request: 10
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/baranzinilab/kg_rag

Top Issue Authors

  • janjoy (2)
  • yangyangyang-github (2)
  • cswangxiaowei (1)
  • DaiShiqin (1)
  • Davy-Chendy (1)
  • fantastic-413 (1)
  • namin (1)
  • xuzhaoyang-svg (1)

Top Pull Request Authors

  • namin (4)
  • karthiksoman (4)
  • eltociear (1)
  • jarlor (1)

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Dependencies

requirements.txt pypi
  • Babel ==2.12.1
  • Jinja2 ==3.1.2
  • MarkupSafe ==2.1.3
  • Pillow ==10.0.1
  • PyPika ==0.48.9
  • PyYAML ==6.0.1
  • Pygments ==2.16.1
  • SQLAlchemy ==2.0.21
  • Send2Trash ==1.8.2
  • aiohttp ==3.8.5
  • aiosignal ==1.3.1
  • annotated-types ==0.5.0
  • anyio ==3.7.1
  • appnope ==0.1.3
  • argon2-cffi ==23.1.0
  • argon2-cffi-bindings ==21.2.0
  • arrow ==1.2.3
  • asttokens ==2.4.0
  • async-lru ==2.0.4
  • async-timeout ==4.0.3
  • attrs ==23.1.0
  • backcall ==0.2.0
  • backoff ==2.2.1
  • bcrypt ==4.0.1
  • beautifulsoup4 ==4.12.2
  • bleach ==6.0.0
  • certifi ==2023.7.22
  • cffi ==1.15.1
  • charset-normalizer ==3.2.0
  • chroma-hnswlib ==0.7.3
  • chromadb ==0.4.13
  • click ==8.1.7
  • coloredlogs ==15.0.1
  • comm ==0.1.4
  • dataclasses-json ==0.6.0
  • debugpy ==1.8.0
  • decorator ==5.1.1
  • defusedxml ==0.7.1
  • diskcache ==5.6.3
  • exceptiongroup ==1.1.3
  • executing ==1.2.0
  • fastapi ==0.103.1
  • fastjsonschema ==2.18.0
  • filelock ==3.12.4
  • flatbuffers ==23.5.26
  • fqdn ==1.5.1
  • frozenlist ==1.4.0
  • fsspec ==2023.9.2
  • greenlet ==2.0.2
  • h11 ==0.14.0
  • httptools ==0.6.0
  • huggingface-hub ==0.17.2
  • humanfriendly ==10.0
  • idna ==3.4
  • importlib-resources ==6.1.0
  • ipykernel ==6.25.2
  • ipython ==8.15.0
  • isoduration ==20.11.0
  • jedi ==0.19.0
  • joblib ==1.3.2
  • json5 ==0.9.14
  • jsonpatch ==1.33
  • jsonpointer ==2.4
  • jsonschema ==4.19.1
  • jsonschema-specifications ==2023.7.1
  • jupyter-events ==0.7.0
  • jupyter-lsp ==2.2.0
  • jupyter_client ==8.3.1
  • jupyter_core ==5.3.1
  • jupyter_server ==2.7.3
  • jupyter_server_terminals ==0.4.4
  • jupyterlab ==4.0.6
  • jupyterlab-pygments ==0.2.2
  • jupyterlab_server ==2.25.0
  • langchain ==0.0.301
  • langsmith ==0.0.40
  • llama_cpp_python ==0.2.7
  • marshmallow ==3.20.1
  • matplotlib-inline ==0.1.6
  • mistune ==3.0.1
  • monotonic ==1.6
  • mpmath ==1.3.0
  • multidict ==6.0.4
  • mypy-extensions ==1.0.0
  • nbclient ==0.8.0
  • nbconvert ==7.8.0
  • nbformat ==5.9.2
  • neo4j ==5.12.0
  • nest-asyncio ==1.5.8
  • networkx ==3.1
  • nltk ==3.8.1
  • notebook ==7.0.4
  • notebook_shim ==0.2.3
  • numexpr ==2.8.6
  • numpy ==1.26.0
  • onnxruntime ==1.16.0
  • overrides ==7.4.0
  • packaging ==23.1
  • pandas ==2.1.1
  • pandocfilters ==1.5.0
  • parso ==0.8.3
  • pexpect ==4.8.0
  • pickleshare ==0.7.5
  • platformdirs ==3.10.0
  • posthog ==3.0.2
  • prometheus-client ==0.17.1
  • prompt-toolkit ==3.0.39
  • protobuf ==4.24.3
  • psutil ==5.9.5
  • ptyprocess ==0.7.0
  • pulsar-client ==3.3.0
  • pure-eval ==0.2.2
  • pycparser ==2.21
  • pydantic ==2.4.0
  • pydantic_core ==2.10.0
  • python-dateutil ==2.8.2
  • python-dotenv ==1.0.0
  • python-json-logger ==2.0.7
  • pytz ==2023.3.post1
  • pyzmq ==25.1.1
  • referencing ==0.30.2
  • regex ==2023.8.8
  • requests ==2.31.0
  • rfc3339-validator ==0.1.4
  • rfc3986-validator ==0.1.1
  • rpds-py ==0.10.3
  • safetensors ==0.3.3
  • scikit-learn ==1.3.1
  • scipy ==1.11.2
  • sentence-transformers ==2.2.2
  • sentencepiece ==0.1.99
  • six ==1.16.0
  • sniffio ==1.3.0
  • soupsieve ==2.5
  • stack-data ==0.6.2
  • starlette ==0.27.0
  • sympy ==1.12
  • tenacity ==8.2.3
  • terminado ==0.17.1
  • threadpoolctl ==3.2.0
  • tinycss2 ==1.2.1
  • tokenizers ==0.13.3
  • tomli ==2.0.1
  • torch ==2.0.1
  • torchvision ==0.15.2
  • tornado ==6.3.3
  • tqdm ==4.66.1
  • traitlets ==5.10.0
  • transformers ==4.33.2
  • typer ==0.9.0
  • typing-inspect ==0.9.0
  • typing_extensions ==4.8.0
  • tzdata ==2023.3
  • uri-template ==1.3.0
  • urllib3 ==2.0.5
  • uvicorn ==0.23.2
  • uvloop ==0.17.0
  • watchfiles ==0.20.0
  • wcwidth ==0.2.6
  • webcolors ==1.13
  • webencodings ==0.5.1
  • websocket-client ==1.6.3
  • websockets ==11.0.3
  • yarl ==1.9.2

Score: 7.702556113268582