https://github.com/fpusan/superpang
Non-redundant pangenome assemblies from multiple genomes or bins
https://github.com/fpusan/superpang
Keywords
bioinformatics genomics metagenomics pangenome
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Non-redundant pangenome assemblies from multiple genomes or bins
- Host: GitHub
- URL: https://github.com/fpusan/superpang
- Owner: fpusan
- License: bsd-3-clause
- Created: 2021-06-14T13:14:32.000Z (almost 4 years ago)
- Default Branch: main
- Last Pushed: 2024-05-01T11:31:43.000Z (about 1 year ago)
- Last Synced: 2024-05-02T07:21:21.953Z (about 1 year ago)
- Topics: bioinformatics, genomics, metagenomics, pangenome
- Language: Python
- Homepage:
- Size: 3.7 MB
- Stars: 13
- Watchers: 2
- Forks: 2
- Open Issues: 1
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Owner metadata
- Name: Fernando Puente-Sánchez
- Login: fpusan
- Email:
- Kind: user
- Description:
- Website:
- Location: Spain
- Twitter:
- Company: Swedish University of Agricultural Sciences
- Icon url: https://avatars.githubusercontent.com/u/8419198?v=4
- Repositories: 6
- Last ynced at: 2024-03-20T18:55:32.940Z
- Profile URL: https://github.com/fpusan
GitHub Events
Total
- Create event: 17
- Release event: 17
- Issues event: 21
- Watch event: 14
- Delete event: 3
- Issue comment event: 63
- Public event: 1
- Push event: 62
- Pull request event: 1
- Fork event: 1
Last Year
- Create event: 7
- Delete event: 1
- Fork event: 1
- Issue comment event: 14
- Issues event: 4
- Pull request event: 1
- Push event: 27
- Release event: 6
- Watch event: 9
Committers metadata
Last synced: over 1 year ago
Total Commits: 89
Total Committers: 1
Avg Commits per committer: 89.0
Development Distribution Score (DDS): 0.0
Commits in past year: 36
Committers in past year: 1
Avg Commits per committer in past year: 36.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| fpusan | f****n@g****m | 89 |
Committer domains:
Issue and Pull Request metadata
Last synced: about 1 year ago
Total issues: 11
Total pull requests: 1
Average time to close issues: 7 days
Average time to close pull requests: less than a minute
Total issue authors: 9
Total pull request authors: 1
Average comments per issue: 6.36
Average comments per pull request: 0.0
Merged pull request: 1
Bot issues: 0
Bot pull requests: 0
Past year issues: 1
Past year pull requests: 1
Past year average time to close issues: N/A
Past year average time to close pull requests: less than a minute
Past year issue authors: 1
Past year pull request authors: 1
Past year average comments per issue: 13.0
Past year average comments per pull request: 0.0
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- yi1873 (3)
- azk001 (1)
- cifuj (1)
- fpusan (1)
- jnwoodhouse (1)
- liushanlin (1)
- nick-youngblut (1)
- timyerg (1)
- wanglei8851 (1)
Top Pull Request Authors
- fpusan (1)
Top Issue Labels
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 25 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 18
- Total maintainers: 1
pypi.org: superpang
Non-redundant pangenome assemblies from multiple genomes or bins
- Homepage: https://github.com/fpusan/SuperPang
- Documentation: https://superpang.readthedocs.io/
- Licenses: BSD 3-Clause License Copyright (c) 2021, Fernando Puente-Sánchez All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
- Latest release: 1.3.0 (published about 1 year ago)
- Last Synced: 2024-06-04T01:01:52.299Z (11 months ago)
- Versions: 18
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 25 Last month
-
Rankings:
- Dependent packages count: 10.119%
- Stargazers count: 17.741%
- Average: 21.398%
- Dependent repos count: 21.545%
- Forks count: 22.645%
- Downloads: 34.942%
- Maintainers (1)
Dependencies
- numpy *
- mOTUlizer ==0.2.4
- mappy *
- numpy *
- speedict *
Score: 5.934894195619588