https://github.com/gmod/jbrowse-components

Source code for JBrowse 2, a modern React-based genome browser
https://github.com/gmod/jbrowse-components

Keywords

bioinformatics genomics jbrowse visualization

Keywords from Contributors

measures transformations observable generic archiving feature-toggle optimizer productivity charting compose

Last synced: 11 months ago
JSON representation

Acceptance Criteria

Revelant topics? true
External users? true
Open source license? true
Active? true
Fork? false

Repository metadata

Source code for JBrowse 2, a modern React-based genome browser

Host: GitHub
URL: https://github.com/gmod/jbrowse-components
Owner: GMOD
License: apache-2.0
Created: 2018-10-05T17:14:00.000Z (over 6 years ago)
Default Branch: main
Last Pushed: 2024-06-10T14:52:50.000Z (11 months ago)
Last Synced: 2024-06-10T17:09:13.649Z (11 months ago)
Topics: bioinformatics, genomics, jbrowse, visualization
Language: TypeScript
Homepage: https://jbrowse.org/jb2
Size: 192 MB
Stars: 192
Watchers: 21
Forks: 60
Open Issues: 331
Releases: 0
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md

Owner metadata

Name: Generic Model Organism Database Project
Login: GMOD
Email:
Kind: organization
Description:
Website: http://gmod.org
Location:
Twitter:
Company:
Icon url: https://avatars.githubusercontent.com/u/342482?v=4
Repositories: 95
Last ynced at: 2024-04-10T16:42:07.339Z
Profile URL: https://github.com/GMOD

Committers metadata

Last synced: about 1 year ago

Total Commits: 8,101
Total Committers: 33
Avg Commits per committer: 245.485
Development Distribution Score (DDS): 0.441

Commits in past year: 634
Committers in past year: 12
Avg Commits per committer in past year: 52.833
Development Distribution Score (DDS) in past year: 0.077

Name	Email	Commits
Colin	c**h@g**m	4525
Garrett Stevens	s**j@g**m	1218
Robert Buels	r**s@g**m	869
peterkxie	p**e@y**m	472
Elliot Hershberg	e**g@g**m	406
teresam856	t**z@g**m	354
Caroline Bridge	c**e@o**a	55
Andrew Duncan	a**n@o**a	50
dependabot[bot]	4****]	47
Caroline Bridge	8****r	29
Teresa Martinez	4****6	19
greenkeeper[bot]	g****]	15
hextraza	s**n@g**m	7
Scott Cain	s**t@s**t	6
grzelaka	a**k@c**m	4
andrzejgrzelak	g**d@g**m	3
Ubuntu	u**u@i**l	2
Ubuntu	u**u@i**l	2
Akusem	n**z@o**r	2
Andra Vasilache	v**a@g**m	2
Lilas-w	8****w	2
Adam Wright	a**t@w**g	1
Watal M. Iwasaki	h****l	1
Shivang Dwivedi	8****g	1
Liu ZH	5****k	1
Alexey Mukhin	A****Q	1
Drew T. Doering	d**g@g**m	1
Nathan Dunn	n**n@l**v	1
Nathan Dunn	n**n@m**m	1
Robert Buels	r**2@c**u	1
and 3 more...

Committer domains:

Issue and Pull Request metadata

Last synced: 11 months ago

Total issues: 829
Total pull requests: 889
Average time to close issues: 9 months
Average time to close pull requests: 19 days
Total issue authors: 60
Total pull request authors: 22
Average comments per issue: 2.09
Average comments per pull request: 2.2
Merged pull request: 675
Bot issues: 0
Bot pull requests: 36

Past year issues: 566
Past year pull requests: 685
Past year average time to close issues: about 1 month
Past year average time to close pull requests: 4 days
Past year issue authors: 44
Past year pull request authors: 15
Past year average comments per issue: 1.47
Past year average comments per pull request: 1.67
Past year merged pull request: 560
Past year bot issues: 0
Past year bot pull requests: 29

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/gmod/jbrowse-components

Top Issue Authors

cmdcolin (538)
garrettjstevens (51)
scottcain (42)
rbuels (37)
ihh (24)
carolinebridge-oicr (18)
bbimber (8)
dirkjanvw (8)
alpapan (6)
JeanQ2020 (6)
yukaiquan (4)
Maarten-vd-Sande (4)
JoshuaFortriede (3)
jdepons (3)
kwentine (3)

Top Pull Request Authors

cmdcolin (669)
garrettjstevens (48)
carolinebridge-oicr (48)
dependabot[bot] (36)
rbuels (15)
kudouhei (15)
carolinebridge (13)
scottcain (5)
nathandunn (5)
AcaDemIQ (5)
daertommy (5)
Prajwaldindokar5 (4)
raj1701 (3)
Lilas-w (3)
Maarten-vd-Sande (3)

Top Issue Labels

enhancement (495)
bug (242)
applied (44)
size small (28)
high impact (26)
size medium (23)
housekeeping (21)
probably-external-plugin (11)
desktop (10)
veupathdb (10)
pag2023 (10)
documentation (9)
hard-to-reproduce (9)
protein_msa (6)
needs review (6)
good first issue (6)
RGD (5)
performance (5)
apollo (3)
size large (3)
maybe_stale (3)
text searching (3)
jbrowse-web (2)
user-request (1)
scalability (1)
sanger tol (1)
dependencies (1)
ui-review (1)

Top Pull Request Labels

enhancement (243)
bug (197)
needs label triage (94)
internal (64)
dependencies (60)
documentation (51)
housekeeping (8)
size medium (3)
discuss in meeting (2)
size large (1)

Package metadata

Total packages: 45
Total downloads:
- npm: 34,392 last-month
Total dependent packages: 182 (may contain duplicates)
Total dependent repositories: 571 (may contain duplicates)
Total versions: 1,930
Total maintainers: 9

npmjs.org: @jbrowse/core

JBrowse 2 core libraries used by plugins

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.513Z (11 months ago)
Versions: 87
Dependent Packages: 29
Dependent Repositories: 44
Downloads: 2,166 Last month
Rankings:
- Dependent packages count: 0.893%
- Dependent repos count: 1.973%
- Average: 2.805%
- Downloads: 2.815%
- Forks count: 4.023%
- Stargazers count: 4.32%
Maintainers (6)

npmjs.org: @jbrowse/plugin-linear-genome-view

JBrowse 2 linear genome view

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:20.441Z (11 months ago)
Versions: 83
Dependent Packages: 14
Dependent Repositories: 34
Downloads: 1,483 Last month
Rankings:
- Dependent packages count: 1.572%
- Dependent repos count: 2.185%
- Downloads: 2.87%
- Average: 2.994%
- Forks count: 4.023%
- Stargazers count: 4.32%
Maintainers (6)

npmjs.org: @jbrowse/plugin-wiggle

JBrowse 2 wiggle adapters, tracks, etc.

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.626Z (11 months ago)
Versions: 81
Dependent Packages: 8
Dependent Repositories: 33
Downloads: 1,168 Last month
Rankings:
- Dependent repos count: 2.213%
- Dependent packages count: 2.48%
- Downloads: 2.868%
- Average: 3.181%
- Forks count: 4.023%
- Stargazers count: 4.32%
Maintainers (6)

npmjs.org: @jbrowse/react-linear-genome-view

JBrowse 2 linear genome view React component

Homepage: https://jbrowse.org
Licenses: MIT
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.275Z (11 months ago)
Versions: 76
Dependent Packages: 6
Dependent Repositories: 27
Downloads: 2,773 Last month
Rankings:
- Downloads: 2.293%
- Dependent repos count: 2.408%
- Dependent packages count: 3.152%
- Average: 3.239%
- Forks count: 4.023%
- Stargazers count: 4.32%
Maintainers (6)

npmjs.org: @jbrowse/plugin-data-management

JBrowse 2 linear genome view

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.854Z (11 months ago)
Versions: 84
Dependent Packages: 7
Dependent Repositories: 32
Downloads: 2,615 Last month
Rankings:
- Dependent repos count: 2.239%
- Dependent packages count: 2.77%
- Downloads: 2.844%
- Average: 3.239%
- Forks count: 4.023%
- Stargazers count: 4.32%
Maintainers (6)

npmjs.org: @jbrowse/cli

A command line tool for working with JBrowse 2

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:18.599Z (11 months ago)
Versions: 85
Dependent Packages: 18
Dependent Repositories: 13
Downloads: 944 Last month
Rankings:
- Dependent packages count: 1.29%
- Dependent repos count: 3.294%
- Average: 3.317%
- Downloads: 3.658%
- Forks count: 4.023%
- Stargazers count: 4.32%
Maintainers (6)

npmjs.org: @jbrowse/plugin-variants

JBrowse 2 variant adapters, tracks, etc.

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:18.807Z (11 months ago)
Versions: 85
Dependent Packages: 5
Dependent Repositories: 32
Downloads: 1,163 Last month
Rankings:
- Dependent repos count: 2.239%
- Downloads: 2.865%
- Average: 3.43%
- Dependent packages count: 3.701%
- Forks count: 4.023%
- Stargazers count: 4.32%
Maintainers (6)

npmjs.org: @jbrowse/plugin-sequence

JBrowse 2 sequence adapters, tracks, etc.

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.777Z (11 months ago)
Versions: 82
Dependent Packages: 4
Dependent Repositories: 32
Downloads: 1,124 Last month
Rankings:
- Dependent repos count: 2.239%
- Downloads: 2.876%
- Average: 3.593%
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent packages count: 4.508%
Maintainers (6)

npmjs.org: @jbrowse/plugin-circular-view

JBrowse 2 circular view

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:18.927Z (11 months ago)
Versions: 81
Dependent Packages: 4
Dependent Repositories: 32
Downloads: 1,480 Last month
Rankings:
- Dependent repos count: 2.239%
- Downloads: 2.877%
- Average: 3.593%
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent packages count: 4.508%
Maintainers (6)

npmjs.org: @jbrowse/plugin-config

JBrowse 2 config utilities

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.796Z (11 months ago)
Versions: 83
Dependent Packages: 4
Dependent Repositories: 32
Downloads: 1,444 Last month
Rankings:
- Dependent repos count: 2.239%
- Downloads: 2.888%
- Average: 3.596%
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent packages count: 4.508%
Maintainers (6)

npmjs.org: @jbrowse/product-core

JBrowse 2 code shared between products but not used by plugins

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:18.379Z (11 months ago)
Versions: 15
Dependent Packages: 6
Dependent Repositories: 8
Downloads: 1,300 Last month
Rankings:
- Dependent packages count: 3.152%
- Downloads: 3.26%
- Average: 3.766%
- Forks count: 4.023%
- Dependent repos count: 4.076%
- Stargazers count: 4.32%
Maintainers (6)

npmjs.org: @jbrowse/plugin-alignments

JBrowse 2 alignments adapters, tracks, etc.

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.233Z (11 months ago)
Versions: 84
Dependent Packages: 3
Dependent Repositories: 29
Downloads: 1,131 Last month
Rankings:
- Dependent repos count: 2.334%
- Downloads: 2.873%
- Average: 3.888%
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent packages count: 5.89%
Maintainers (6)

npmjs.org: @jbrowse/plugin-gff3

JBrowse 2 gff3.

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:22.034Z (11 months ago)
Versions: 81
Dependent Packages: 3
Dependent Repositories: 29
Downloads: 1,089 Last month
Rankings:
- Dependent repos count: 2.334%
- Downloads: 2.887%
- Average: 3.891%
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent packages count: 5.89%
Maintainers (6)

npmjs.org: @jbrowse/plugin-svg

JBrowse 2 plugin for svg features

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:20.442Z (11 months ago)
Versions: 82
Dependent Packages: 3
Dependent Repositories: 29
Downloads: 1,090 Last month
Rankings:
- Dependent repos count: 2.334%
- Downloads: 2.887%
- Average: 3.891%
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent packages count: 5.89%
Maintainers (6)

npmjs.org: @jbrowse/plugin-bed

JBrowse 2 bed adapters, tracks, etc.

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.820Z (11 months ago)
Versions: 83
Dependent Packages: 3
Dependent Repositories: 29
Downloads: 1,085 Last month
Rankings:
- Dependent repos count: 2.334%
- Downloads: 2.912%
- Average: 3.896%
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent packages count: 5.89%
Maintainers (6)

npmjs.org: @jbrowse/plugin-authentication

JBrowse 2 Authentication

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:18.902Z (11 months ago)
Versions: 27
Dependent Packages: 4
Dependent Repositories: 11
Downloads: 1,271 Last month
Rankings:
- Downloads: 3.098%
- Dependent repos count: 3.541%
- Average: 3.898%
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent packages count: 4.508%
Maintainers (6)

npmjs.org: @jbrowse/plugin-trix

JBrowse 2 trix text search adapter

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.640Z (11 months ago)
Versions: 70
Dependent Packages: 3
Dependent Repositories: 12
Downloads: 1,078 Last month
Rankings:
- Downloads: 2.939%
- Dependent repos count: 3.411%
- Forks count: 4.023%
- Average: 4.117%
- Stargazers count: 4.32%
- Dependent packages count: 5.89%
Maintainers (6)

npmjs.org: @jbrowse/plugin-legacy-jbrowse

JBrowse 2 plugin for connecting to and reading JBrowse 1 data

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.677Z (11 months ago)
Versions: 72
Dependent Packages: 3
Dependent Repositories: 8
Downloads: 1,070 Last month
Rankings:
- Downloads: 2.914%
- Forks count: 4.023%
- Dependent repos count: 4.076%
- Average: 4.245%
- Stargazers count: 4.32%
- Dependent packages count: 5.89%
Maintainers (6)

npmjs.org: @jbrowse/plugin-gccontent

JBrowse 2 gccontent concepts

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.613Z (11 months ago)
Versions: 26
Dependent Packages: 3
Dependent Repositories: 8
Downloads: 1,036 Last month
Rankings:
- Downloads: 3.107%
- Forks count: 4.023%
- Dependent repos count: 4.076%
- Average: 4.283%
- Stargazers count: 4.32%
- Dependent packages count: 5.89%
Maintainers (6)

npmjs.org: @jbrowse/development-tools

Tools to help with developing and building JBrowse 2 plugins

Homepage: https://jbrowse.org/
Licenses: Apache-2.0
Latest release: 2.1.1 (published over 2 years ago)
Last Synced: 2024-06-10T17:29:19.782Z (11 months ago)
Versions: 37
Dependent Packages: 22
Dependent Repositories: 19
Downloads: 237 Last month
Rankings:
- Dependent packages count: 1.104%
- Dependent repos count: 2.791%
- Forks count: 4.023%
- Stargazers count: 4.32%
- Average: 4.464%
- Downloads: 10.082%
Maintainers (6)

npmjs.org: @jbrowse/embedded-core

JBrowse 2 code shared between embedded products

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:20.223Z (11 months ago)
Versions: 15
Dependent Packages: 2
Dependent Repositories: 5
Downloads: 936 Last month
Rankings:
- Downloads: 3.313%
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 5.023%
- Average: 5.103%
- Dependent packages count: 8.836%
Maintainers (6)

npmjs.org: @jbrowse/react-circular-genome-view

JBrowse 2 circular genome view React component

Homepage: https://jbrowse.org
Licenses: MIT
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.457Z (11 months ago)
Versions: 67
Dependent Packages: 2
Dependent Repositories: 4
Downloads: 2,891 Last month
Rankings:
- Downloads: 3.175%
- Forks count: 4.023%
- Stargazers count: 4.32%
- Average: 5.184%
- Dependent repos count: 5.564%
- Dependent packages count: 8.836%
Maintainers (6)

npmjs.org: @jbrowse/plugin-grid-bookmark

JBrowse 2 grid bookmark widget

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:20.390Z (11 months ago)
Versions: 73
Dependent Packages: 2
Dependent Repositories: 4
Downloads: 164 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 5.564%
- Average: 5.834%
- Downloads: 6.426%
- Dependent packages count: 8.836%
Maintainers (6)

npmjs.org: @jbrowse/plugin-gtf

JBrowse 2 gtf feature adapter

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.662Z (11 months ago)
Versions: 66
Dependent Packages: 2
Dependent Repositories: 4
Downloads: 157 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 5.564%
- Average: 5.873%
- Downloads: 6.622%
- Dependent packages count: 8.836%
Maintainers (6)

npmjs.org: @jbrowse/plugin-arc

JBrowse 2 arc adapters, tracks, etc.

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.426Z (11 months ago)
Versions: 15
Dependent Packages: 2
Dependent Repositories: 4
Downloads: 863 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 5.564%
- Average: 5.965%
- Downloads: 7.082%
- Dependent packages count: 8.836%
Maintainers (6)

npmjs.org: @jbrowse/app-core

JBrowse 2 code shared between the 'full featured' apps e.g. jbrowse-web and jbrowse-desktop

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:18.783Z (11 months ago)
Versions: 15
Dependent Packages: 2
Dependent Repositories: 3
Downloads: 191 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 6.344%
- Average: 6.623%
- Dependent packages count: 8.836%
- Downloads: 9.593%
Maintainers (6)

npmjs.org: @jbrowse/text-indexing

JBrowse 2 text indexing for desktop

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:20.012Z (11 months ago)
Versions: 15
Dependent Packages: 2
Dependent Repositories: 1
Downloads: 146 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Average: 7.456%
- Dependent packages count: 8.836%
- Downloads: 9.801%
- Dependent repos count: 10.302%
Maintainers (6)

npmjs.org: @gmod/jbrowse-core

JBrowse 2 core libraries used by plugins

Homepage: https://github.com/GMOD/jbrowse-components
Licenses: MIT
Latest release: 0.0.1-beta.22 (published over 4 years ago)
Last Synced: 2024-06-10T17:29:18.901Z (11 months ago)
Versions: 18
Dependent Packages: 3
Dependent Repositories: 2
Downloads: 10 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent packages count: 5.89%
- Dependent repos count: 7.616%
- Average: 7.727%
- Downloads: 16.788%
Maintainers (6)

npmjs.org: @jbrowse/plugin-comparative-adapters

JBrowse 2 comparative adapters

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.173Z (11 months ago)
Versions: 15
Dependent Packages: 1
Dependent Repositories: 4
Downloads: 161 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 5.564%
- Average: 8.867%
- Downloads: 9.513%
- Dependent packages count: 20.916%
Maintainers (6)

npmjs.org: @jbrowse/plugin-rdf

JBrowse 2 RDF resources

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:20.008Z (11 months ago)
Versions: 15
Dependent Packages: 1
Dependent Repositories: 4
Downloads: 173 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 5.564%
- Average: 8.889%
- Downloads: 9.624%
- Dependent packages count: 20.916%
Maintainers (6)

npmjs.org: @jbrowse/plugin-spreadsheet-view

JBrowse 2 spreadsheet view

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.371Z (11 months ago)
Versions: 15
Dependent Packages: 1
Dependent Repositories: 4
Downloads: 172 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 5.564%
- Average: 8.889%
- Downloads: 9.624%
- Dependent packages count: 20.916%
Maintainers (6)

npmjs.org: @jbrowse/plugin-linear-comparative-view

JBrowse 2 linear comparative view

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:18.773Z (11 months ago)
Versions: 15
Dependent Packages: 1
Dependent Repositories: 4
Downloads: 158 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 5.564%
- Average: 8.895%
- Downloads: 9.651%
- Dependent packages count: 20.916%
Maintainers (6)

npmjs.org: @jbrowse/plugin-lollipop

JBrowse 2 plugin for lollipops

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.476Z (11 months ago)
Versions: 15
Dependent Packages: 1
Dependent Repositories: 4
Downloads: 168 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 5.564%
- Average: 8.895%
- Downloads: 9.651%
- Dependent packages count: 20.916%
Maintainers (6)

npmjs.org: @jbrowse/plugin-menus

JBrowse 2 basic menus

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:20.053Z (11 months ago)
Versions: 15
Dependent Packages: 1
Dependent Repositories: 4
Downloads: 167 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 5.564%
- Average: 8.931%
- Downloads: 9.833%
- Dependent packages count: 20.916%
Maintainers (6)

npmjs.org: @jbrowse/plugin-dotplot-view

JBrowse 2 dotplot view

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.324Z (11 months ago)
Versions: 15
Dependent Packages: 1
Dependent Repositories: 4
Downloads: 167 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 5.564%
- Average: 8.931%
- Downloads: 9.833%
- Dependent packages count: 20.916%
Maintainers (6)

npmjs.org: @jbrowse/plugin-sv-inspector

JBrowse 2 SV inspector view

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:18.739Z (11 months ago)
Versions: 15
Dependent Packages: 1
Dependent Repositories: 4
Downloads: 171 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 5.564%
- Average: 8.931%
- Downloads: 9.833%
- Dependent packages count: 20.916%
Maintainers (6)

npmjs.org: @jbrowse/plugin-hic

JBrowse 2 hic adapters, tracks, etc.

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:18.669Z (11 months ago)
Versions: 15
Dependent Packages: 1
Dependent Repositories: 4
Downloads: 169 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 5.564%
- Average: 8.937%
- Downloads: 9.862%
- Dependent packages count: 20.916%
Maintainers (6)

npmjs.org: @jbrowse/plugin-breakpoint-split-view

JBrowse 2 breakpoint detail split view

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.423Z (11 months ago)
Versions: 15
Dependent Packages: 1
Dependent Repositories: 4
Downloads: 160 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 5.564%
- Average: 8.949%
- Downloads: 9.921%
- Dependent packages count: 20.916%
Maintainers (6)

npmjs.org: @jbrowse/web-core

JBrowse 2 code shared between web-app type products

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.279Z (11 months ago)
Versions: 15
Dependent Packages: 1
Dependent Repositories: 3
Downloads: 168 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 6.344%
- Average: 9.074%
- Downloads: 9.767%
- Dependent packages count: 20.916%
Maintainers (6)

npmjs.org: @gmod/jbrowse-development-tools

Tools to help with developing and building JBrowse 2 plugins

Homepage: https://github.com/GMOD/jbrowse-components
Licenses: MIT
Latest release: 0.0.1 (published almost 5 years ago)
Last Synced: 2024-06-10T17:29:19.578Z (11 months ago)
Versions: 16
Dependent Packages: 1
Dependent Repositories: 2
Downloads: 4 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 7.616%
- Average: 10.984%
- Downloads: 18.044%
- Dependent packages count: 20.916%
Maintainers (6)

npmjs.org: @gmod/jbrowse-cli

A command line tool for working with JBrowse 2

Homepage: https://github.com/GMOD/jbrowse-components
Licenses: MIT
Latest release: 0.0.1-beta.23 (published over 4 years ago)
Last Synced: 2024-06-10T17:29:18.858Z (11 months ago)
Versions: 14
Dependent Packages: 1
Dependent Repositories: 1
Downloads: 9 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 10.302%
- Average: 13.76%
- Dependent packages count: 20.916%
- Downloads: 29.24%
Maintainers (6)

npmjs.org: @jbrowse/react-app

JBrowse 2 app React component

Homepage: https://jbrowse.org
Licenses: MIT
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.582Z (11 months ago)
Versions: 15
Dependent Packages: 0
Dependent Repositories: 3
Downloads: 179 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 6.344%
- Downloads: 10.151%
- Average: 15.339%
- Dependent packages count: 51.857%
Maintainers (6)

npmjs.org: @jbrowse/plugin-text-indexing

JBrowse 2 text indexing rpc method

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:20.175Z (11 months ago)
Versions: 15
Dependent Packages: 0
Dependent Repositories: 1
Downloads: 132 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Downloads: 10.292%
- Dependent repos count: 10.302%
- Average: 16.159%
- Dependent packages count: 51.857%
Maintainers (6)

npmjs.org: @jbrowse/plugin-jobs-management

JBrowse 2 jobs management

Homepage: https://jbrowse.org
Licenses: Apache-2.0
Latest release: 2.11.1 (published 12 months ago)
Last Synced: 2024-06-10T17:29:19.370Z (11 months ago)
Versions: 15
Dependent Packages: 0
Dependent Repositories: 1
Downloads: 129 Last month
Rankings:
- Forks count: 4.023%
- Stargazers count: 4.32%
- Dependent repos count: 10.302%
- Downloads: 10.556%
- Average: 16.212%
- Dependent packages count: 51.857%
Maintainers (6)

npmjs.org: testdirectorykesem

> JBrowse 2 linear genome view React component

Homepage: https://github.com/GMOD/jbrowse-components
Licenses: ISC
Latest release: 1.1.0 (published over 4 years ago)
Last Synced: 2024-06-10T17:29:17.247Z (11 months ago)
Versions: 2
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 0 Last month
Rankings:
- Dependent repos count: 25.328%
- Dependent packages count: 32.894%
- Average: 38.753%
- Downloads: 58.037%
Maintainers (1)
- kc15155

Dependencies

.github/workflows/desktop_build_linux.yml actions

actions/checkout v2 composite
actions/setup-node v2 composite
bahmutov/npm-install v1 composite

.github/workflows/desktop_build_mac.yml actions

actions/checkout v2 composite
actions/setup-node v2 composite
bahmutov/npm-install v1 composite

.github/workflows/desktop_build_win.yml actions

actions/checkout v2 composite
bahmutov/npm-install v1 composite

.github/workflows/jbrowse-web.yml actions

actions/checkout v2 composite
actions/create-release v1 composite
actions/setup-node v1 composite
actions/upload-release-asset v1 composite

.github/workflows/push.yml actions

actions/checkout v2 composite
actions/setup-node v2 composite
actions/setup-node v1 composite
aws-actions/configure-aws-credentials v1 composite
bahmutov/npm-install v1 composite
codecov/codecov-action v2 composite

.github/workflows/website.yml actions

actions/checkout v2 composite
actions/setup-node v2 composite
aws-actions/configure-aws-credentials v1 composite
bahmutov/npm-install v1 composite
docker://pandoc/latex 2.9 composite

component_tests/cgv/package.json npm

@craco/craco ^6.4.3
@fontsource/roboto ^4.5.5
@jbrowse/plugin-linear-genome-view ^2.3.3
@jbrowse/react-circular-genome-view ^2.0.0
@testing-library/cypress ^8.0.2
@testing-library/jest-dom ^5.16.4
@testing-library/react ^12.1.4
@testing-library/user-event ^13.5.0
@types/jest ^27.4.1
@types/node ^16.11.26
@types/react ^17.0.44
@types/react-dom ^17.0.15
cypress ^9.2.1
node-polyfill-webpack-plugin ^1.1.4
react ^17.0.0
react-dom ^17.0.0
react-scripts ^5.0.1
serve ^13.0.2
start-server-and-test ^1.14.0
typescript ^4.6.3
web-vitals ^2.1.4

component_tests/lgv/package.json npm

@craco/craco ^6.4.3
@fontsource/roboto ^4.5.5
@jbrowse/react-linear-genome-view ^2.0.0
@testing-library/cypress ^8.0.2
@testing-library/jest-dom ^5.16.4
@testing-library/react ^12.1.4
@testing-library/user-event ^13.5.0
@types/jest ^27.4.1
@types/node ^16.11.26
@types/react ^18.0.0
@types/react-dom ^18.0.0
cypress ^9.2.1
node-polyfill-webpack-plugin ^1.1.4
react ^17.0.0
react-dom ^17.0.0
react-scripts ^5.0.1
serve ^13.0.2
start-server-and-test ^1.14.0
typescript ^4.6.3
web-vitals ^2.1.4

package.json npm

@babel/cli ^7.2.3 development
@babel/core ^7.3.4 development
@babel/plugin-proposal-class-properties ^7.3.4 development
@babel/plugin-proposal-export-default-from ^7.2.0 development
@babel/plugin-transform-runtime ^7.16.4 development
@babel/preset-env ^7.16.4 development
@babel/preset-react ^7.0.0 development
@babel/preset-typescript ^7.3.3 development
@craco/craco ^7.0.0 development
@electron/notarize ^1.2.3 development
@emotion/cache ^11.7.1 development
@emotion/react ^11.9.0 development
@emotion/styled ^11.8.1 development
@mui/material ^5.10.17 development
@mui/x-data-grid ^5.0.0 development
@oclif/dev-cli ^1.26.9 development
@oclif/test ^1.2.7 development
@storybook/addon-essentials ^7.0.0-beta.35 development
@storybook/addon-interactions ^7.0.0-beta.35 development
@storybook/addon-links ^7.0.0-beta.35 development
@storybook/builder-webpack5 ^7.0.0-beta.38 development
@storybook/node-logger ^7.0.0-beta.35 development
@storybook/react ^7.0.0-beta.35 development
@storybook/react-webpack5 ^7.0.0-beta.35 development
@testing-library/jest-dom ^5.16.5 development
@testing-library/react ^12.0.0 development
@types/base64-js ^1.2.5 development
@types/buffer-crc32 ^0.2.2 development
@types/cli-progress ^3.9.2 development
@types/color ^3.0.1 development
@types/cors ^2.8.13 development
@types/cross-spawn ^6.0.2 development
@types/crypto-js ^4.0.1 development
@types/d3-scale ^3.0.0 development
@types/deep-equal ^1.0.1 development
@types/detect-node ^2.0.0 development
@types/dompurify ^2.0.2 development
@types/escape-html ^1.0.2 development
@types/express ^4.17.8 development
@types/get-value ^3.0.1 development
@types/is-object ^1.0.0 development
@types/jest ^29.2.4 development
@types/jest-image-snapshot ^6.1.0 development
@types/jexl ^2.3.0 development
@types/json-parse-better-errors ^1.0.0 development
@types/json-stable-stringify ^1.0.32 development
@types/lodash.merge ^4.6.6 development
@types/long ^4.0.0 development
@types/node ^14.14.0 development
@types/node-fetch ^2.5.7 development
@types/offscreencanvas ^2019.6.4 development
@types/pako ^1.0.1 development
@types/pluralize ^0.0.29 development
@types/range-parser ^1.2.3 development
@types/rbush ^3.0.0 development
@types/react ^18.0.26 development
@types/react-color ^3.0.4 development
@types/react-dom ^18.0.0 development
@types/react-virtualized-auto-sizer ^1.0.0 development
@types/rimraf ^3.0.2 development
@types/set-value ^2.0.0 development
@types/shortid ^0.0.29 development
@types/split2 ^3.2.1 development
@types/string-template ^1.0.2 development
@types/tmp ^0.2.1 development
@types/unzipper ^0.10.3 development
@typescript-eslint/parser ^5.45.1 development
babel-loader ^9.1.0 development
canvas ^2.9.1 development
chai ^4.3.4 development
cross-env ^7.0.2 development
cross-spawn ^7.0.1 development
crypto-js ^3.0.0 development
dependency-graph ^0.11.0 development
electron 22.0.0 development
electron-builder ^23.0.3 development
electron-mock-ipc ^0.3.8 development
eslint ^8.0.0 development
eslint-config-prettier ^8.5.0 development
eslint-config-react-app ^7.0.0 development
eslint-plugin-cypress ^2.12.1 development
eslint-plugin-monorepo ^0.3.2 development
eslint-plugin-prettier ^4.0.0 development
eslint-plugin-react-hooks ^4.3.0 development
eslint-plugin-tsdoc ^0.2.4 development
file-loader ^6.2.0 development
find-yarn-workspace-root ^2.0.0 development
husky ^8.0.0 development
jest ^29.3.1 development
jest-environment-jsdom ^29.3.1 development
jest-fetch-mock ^3.0.3 development
jest-image-snapshot ^6.1.0 development
jest-localstorage-mock ^2.4.3 development
lerna ^5.1.2 development
lerna-changelog ^2.2.0 development
mobx ^6.0.0 development
mobx-react ^7.0.0 development
mobx-state-tree ^5.1.7 development
nock ^13.2.1 development
node-polyfill-webpack-plugin ^2.0.1 development
npm-run-all ^4.1.5 development
prettier ^2.5.1 development
prop-types ^15.0.0 development
react ^17.0.0 development
react-dom ^17.0.0 development
react-scripts ^5.0.1 development
requestidlecallback-polyfill ^1.0.2 development
rimraf ^3.0.2 development
rxjs ^7.0.0 development
semver ^7.3.4 development
slugify ^1.6.5 development
storybook ^7.0.0-beta.35 development
ts-loader ^9.3.0 development
ts-node ^10.4.0 development
tslib ^2.0.1 development
tss-react ^4.0.0 development
typescript ^4.9.3 development
web-encoding ^1.1.5 development
webpack ^5.0.0 development
webpack-cli ^5.0.1 development
webpack-dev-server ^4.7.3 development

packages/core/package.json npm

@babel/runtime ^7.17.9
@gmod/bgzf-filehandle ^1.4.3
@mui/icons-material ^5.0.1
@types/clone ^2.0.0
abortable-promise-cache ^1.5.0
canvas-sequencer ^3.1.0
canvas2svg ^1.0.16
clone ^2.1.2
clsx ^1.0.4
color ^3.1.3
copy-to-clipboard ^3.3.1
deepmerge ^4.2.2
detect-node ^2.1.0
dompurify ^2.3.4
escape-html ^1.0.3
fast-deep-equal ^3.1.3
generic-filehandle ^3.0.0
http-range-fetcher ^1.4.0
is-object ^1.0.1
jexl ^2.3.0
json-stable-stringify ^1.0.1
librpc-web-mod ^1.1.5
load-script2 ^2.0.5
material-ui-popup-state ^3.0.0
rbush ^3.0.1
react-error-boundary ^3.0.0
react-use-measure ^2.1.1
serialize-error ^8.0.0
shortid ^2.2.13
svg-path-generator ^1.1.0

packages/text-indexing/package.json npm

@babel/runtime ^7.16.3
ixixx ^2.0.1
node-fetch ^2.6.0

plugin-development-tools/package.json npm

@types/rollup-plugin-node-builtins ^2.1.2 development
@types/rollup-plugin-node-globals ^1.4.1 development
rollup ^2.77.0 development
typescript ^4.7.4 development
@babel/core ^7.16.0
@babel/plugin-proposal-class-properties ^7.16.0
@babel/preset-env ^7.16.4
@rollup/plugin-babel ^5.3.0
@rollup/plugin-commonjs ^19.0.0
@rollup/plugin-json ^4.1.0
@rollup/plugin-node-resolve ^13.0.0
@rollup/plugin-typescript ^8.3.0
babel-plugin-annotate-pure-calls ^0.4.0
babel-plugin-dev-expression ^0.2.3
babel-plugin-macros ^3.1.0
babel-plugin-polyfill-regenerator ^0.2.3
babel-plugin-transform-rename-import ^2.3.0
builtin-modules ^3.2.0
chalk ^4.1.1
lodash.merge ^4.6.2
rollup-plugin-external-globals ^0.6.1
rollup-plugin-node-builtins ^2.1.2
rollup-plugin-node-globals ^1.4.0
rollup-plugin-sourcemaps ^0.6.3
rollup-plugin-terser ^7.0.2

plugin-development-tools/yarn.lock npm

334 dependencies

plugins/alignments/package.json npm

@gmod/bam ^1.1.15
@gmod/cram ^1.7.1
@mui/icons-material ^5.0.1
canvas2svg ^1.0.16
clone ^2.1.2
color ^3.1.2
copy-to-clipboard ^3.3.1
fast-deep-equal ^3.1.3
generic-filehandle ^3.0.0

plugins/arc/package.json npm

react-svg-tooltip ^0.0.11

plugins/authentication/package.json npm

crypto-js ^3.0.0
generic-filehandle ^3.0.0
jwt-decode ^3.1.2

plugins/bed/package.json npm

@flatten-js/interval-tree ^1.0.15
@gmod/bbi ^3.0.0
@gmod/bed ^2.1.2
@gmod/bgzf-filehandle ^1.4.3
@gmod/tabix ^1.5.2

plugins/breakpoint-split-view/package.json npm

@gmod/vcf ^5.0.9
@mui/icons-material ^5.0.1
svg-path-generator ^1.1.0

plugins/circular-view/package.json npm

@mui/icons-material ^5.0.1
@types/file-saver ^2.0.0
clone ^2.1.2
file-saver ^2.0.0

plugins/comparative-adapters/package.json npm

@gmod/bgzf-filehandle ^1.4.3
generic-filehandle ^3.0.0

plugins/config/package.json npm

@mui/icons-material ^5.0.1
pluralize ^8.0.0

plugins/data-management/package.json npm

@gmod/ucsc-hub ^0.1.6
@mui/icons-material ^5.0.1
@mui/x-data-grid ^5.0.1
clsx ^1.1.0
react-virtualized-auto-sizer ^1.0.2
react-vtree ^3.0.0-beta.1
react-window ^1.8.6

plugins/dotplot-view/package.json npm

@mui/icons-material ^5.0.1
@mui/x-data-grid ^5.0.1
@types/file-saver ^2.0.1
@types/normalize-wheel ^1.0.0
clone ^2.1.2
file-saver ^2.0.0
normalize-wheel ^1.0.1

plugins/gff3/package.json npm

@flatten-js/interval-tree ^1.0.15
@gmod/bgzf-filehandle ^1.4.3
@gmod/gff ^1.3.0
@gmod/tabix ^1.5.2

plugins/grid-bookmark/package.json npm

@mui/icons-material ^5.0.1
@types/file-saver ^2.0.1
file-saver ^2.0.0

plugins/gtf/package.json npm

@flatten-js/interval-tree ^1.0.15
@gmod/bgzf-filehandle ^1.4.3
@gmod/gtf ^0.0.6

plugins/hic/package.json npm

color ^3.1.3
hic-straw ^2.0.3

plugins/jobs-management/package.json npm

@jbrowse/text-indexing ^2.3.4
@mui/icons-material ^5.0.0

plugins/legacy-jbrowse/package.json npm

@gmod/nclist ^0.2.1
buffer-crc32 ^0.2.13
generic-filehandle ^3.0.0
get-value ^3.0.1
set-value ^4.0.1

plugins/linear-comparative-view/package.json npm

@mui/icons-material ^5.0.1
@popperjs/core ^2.0.0
clone ^2.1.2
copy-to-clipboard ^3.3.1
file-saver ^2.0.0
react-popper ^2.0.0

plugins/linear-genome-view/package.json npm

@mui/icons-material ^5.0.1
@popperjs/core ^2.11.0
@types/file-saver ^2.0.1
@types/normalize-wheel ^1.0.0
clone ^2.1.2
clsx ^1.0.4
copy-to-clipboard ^3.3.1
file-saver ^2.0.0
material-ui-popup-state ^3.0.0
normalize-wheel ^1.0.1
react-error-boundary ^3.0.0
react-popper ^2.0.0

plugins/menus/package.json npm

@mui/icons-material ^5.0.1
pluralize ^8.0.0
react-dropzone ^14.2.1

plugins/rdf/package.json npm

string-template ^1.0.0

plugins/sequence/package.json npm

@gmod/indexedfasta ^2.0.2
@gmod/twobit ^1.1.12
abortable-promise-cache ^1.5.0

plugins/spreadsheet-view/package.json npm

@gmod/bgzf-filehandle ^1.4.3
@gmod/vcf ^5.0.9
@jbrowse/plugin-variants ^2.3.4
@mui/icons-material ^5.0.1
csvtojson ^2.0.10

plugins/sv-inspector/package.json npm

@mui/icons-material ^5.0.1
clone ^2.1.2

plugins/text-indexing/package.json npm

@jbrowse/text-indexing ^2.3.4

plugins/trix/package.json npm

@gmod/trix ^2.0.4

plugins/variants/package.json npm

@flatten-js/interval-tree ^1.0.15
@gmod/bgzf-filehandle ^1.4.3
@gmod/tabix ^1.5.2
@gmod/vcf ^5.0.9
@mui/icons-material ^5.0.2
@mui/x-data-grid ^5.0.1
generic-filehandle ^3.0.0

plugins/wiggle/package.json npm

@gmod/bbi ^3.0.0
@mui/icons-material ^5.0.2
@popperjs/core ^2.11.0
clone ^2.1.2
color ^3.1.1
d3-color ^3.0.2
d3-scale ^3.0.2
fast-deep-equal ^3.1.3
is-object ^1.0.1
react-d3-axis-mod ^0.1.9
react-draggable ^4.4.5
react-popper ^2.0.0

products/jbrowse-cli/package.json npm

typescript ^4.5.2 development
@oclif/command ^1.8.11
@oclif/config ^1.18.2
@oclif/errors ^1
@oclif/plugin-help 3.2.14
boxen ^4.2.0
chalk ^4.1.0
cli-progress ^3.9.0
cors ^2.8.5
del ^6.0.0
express ^4.17.1
ixixx ^2.0.1
json-parse-better-errors ^1.0.2
node-fetch ^2.6.0
proxy-agent ^5.0.0
rimraf ^3.0.2
tslib ^2.3.1
unzipper ^0.10.11

products/jbrowse-desktop/package.json npm

electron 22.0.0 development
@emotion/cache ^11.7.1
@emotion/react ^11.9.0
@fontsource/roboto ^4.5.0
@gmod/faidx ^1.0.1
@jbrowse/core ^2.3.4
@jbrowse/plugin-alignments ^2.3.4
@jbrowse/plugin-arc ^2.3.4
@jbrowse/plugin-authentication ^2.3.4
@jbrowse/plugin-bed ^2.3.4
@jbrowse/plugin-breakpoint-split-view ^2.3.4
@jbrowse/plugin-circular-view ^2.3.4
@jbrowse/plugin-comparative-adapters ^2.3.4
@jbrowse/plugin-config ^2.3.4
@jbrowse/plugin-data-management ^2.3.4
@jbrowse/plugin-dotplot-view ^2.3.4
@jbrowse/plugin-gccontent ^2.3.4
@jbrowse/plugin-gff3 ^2.3.4
@jbrowse/plugin-grid-bookmark ^2.3.4
@jbrowse/plugin-gtf ^2.3.4
@jbrowse/plugin-hic ^2.3.4
@jbrowse/plugin-jobs-management ^2.3.4
@jbrowse/plugin-legacy-jbrowse ^2.3.4
@jbrowse/plugin-linear-comparative-view ^2.3.4
@jbrowse/plugin-linear-genome-view ^2.3.4
@jbrowse/plugin-lollipop ^2.3.4
@jbrowse/plugin-menus ^2.3.4
@jbrowse/plugin-rdf ^2.3.4
@jbrowse/plugin-sequence ^2.3.4
@jbrowse/plugin-spreadsheet-view ^2.3.4
@jbrowse/plugin-sv-inspector ^2.3.4
@jbrowse/plugin-svg ^2.3.4
@jbrowse/plugin-text-indexing ^2.3.4
@jbrowse/plugin-trix ^2.3.4
@jbrowse/plugin-variants ^2.3.4
@jbrowse/plugin-wiggle ^2.3.4
@jbrowse/text-indexing ^2.3.4
@mui/icons-material ^5.0.0
@mui/material ^5.10.17
@mui/x-data-grid ^5.0.1
deepmerge ^4.2.2
electron-debug ^3.0.1
electron-is-dev ^2.0.0
electron-updater ^5.0.1
electron-window-state ^5.0.3
librpc-web-mod ^1.1.5
mobx ^6.6.0
mobx-react ^7.5.0
mobx-state-tree ^5.0.0
node-fetch ^2.6.0
node-polyfill-webpack-plugin ^2.0.1
prop-types ^15.7.2
react ^17.0.0
react-dom ^17.0.0
react-error-boundary ^3.0.0
rxjs ^7.0.0
sanitize-filename ^1.6.3
serialize-error ^8.0.0
timeago.js ^4.0.2
tss-react ^4.4.1
use-query-params ^2.0.0
webpack ^5.72.0

products/jbrowse-img/package.json npm

@babel/runtime ^7.17.9
@emotion/cache ^11.7.1
@emotion/react ^11.9.0
@jbrowse/plugin-linear-genome-view ^2.3.4
@jbrowse/react-linear-genome-view ^2.3.4
abortcontroller-polyfill ^1.7.3
canvas ^2.9.1
jsdom ^20.0.3
mobx ^6.6.0
node-fetch ^2.6.7
react ^17.0.0
react-dom ^17.0.0
tmp ^0.2.1
yargs ^17.3.0

products/jbrowse-react-circular-genome-view/package.json npm

@babel/runtime ^7.17.9
@emotion/cache ^11.7.1
@emotion/react ^11.9.0
@emotion/styled ^11.8.1
@jbrowse/core ^2.3.4
@jbrowse/plugin-authentication ^2.3.4
@jbrowse/plugin-circular-view ^2.3.4
@jbrowse/plugin-config ^2.3.4
@jbrowse/plugin-data-management ^2.3.4
@jbrowse/plugin-sequence ^2.3.4
@jbrowse/plugin-variants ^2.3.4
@jbrowse/plugin-wiggle ^2.3.4
@mui/icons-material ^5.0.0
@mui/material ^5.10.17
mobx ^6.6.0
mobx-react ^7.5.0
mobx-state-tree ^5.0.0
prop-types ^15.0.0
react-use-measure ^2.1.1
rxjs ^7.0.0
tss-react ^4.4.1

products/jbrowse-react-linear-genome-view/package.json npm

@babel/runtime ^7.17.9
@emotion/cache ^11.7.1
@emotion/react ^11.9.0
@emotion/styled ^11.8.1
@jbrowse/core ^2.3.4
@jbrowse/plugin-alignments ^2.3.4
@jbrowse/plugin-authentication ^2.3.4
@jbrowse/plugin-bed ^2.3.4
@jbrowse/plugin-circular-view ^2.3.4
@jbrowse/plugin-config ^2.3.4
@jbrowse/plugin-data-management ^2.3.4
@jbrowse/plugin-gccontent ^2.3.4
@jbrowse/plugin-gff3 ^2.3.4
@jbrowse/plugin-legacy-jbrowse ^2.3.4
@jbrowse/plugin-linear-genome-view ^2.3.4
@jbrowse/plugin-sequence ^2.3.4
@jbrowse/plugin-svg ^2.3.4
@jbrowse/plugin-trix ^2.3.4
@jbrowse/plugin-variants ^2.3.4
@jbrowse/plugin-wiggle ^2.3.4
@mui/icons-material ^5.0.0
@mui/material ^5.10.17
librpc-web-mod ^1.1.5
mobx ^6.6.0
mobx-react ^7.5.0
mobx-state-tree ^5.0.0
prop-types ^15.0.0
react-use-measure ^2.1.1
rxjs ^7.0.0
serialize-error ^8.0.0
tss-react ^4.4.1

products/jbrowse-web/package.json npm

@fontsource/roboto ^4.5.0
@jbrowse/core ^2.3.4
@jbrowse/plugin-alignments ^2.3.4
@jbrowse/plugin-arc ^2.3.4
@jbrowse/plugin-authentication ^2.3.4
@jbrowse/plugin-bed ^2.3.4
@jbrowse/plugin-breakpoint-split-view ^2.3.4
@jbrowse/plugin-circular-view ^2.3.4
@jbrowse/plugin-comparative-adapters ^2.3.4
@jbrowse/plugin-config ^2.3.4
@jbrowse/plugin-data-management ^2.3.4
@jbrowse/plugin-dotplot-view ^2.3.4
@jbrowse/plugin-gccontent ^2.3.4
@jbrowse/plugin-gff3 ^2.3.4
@jbrowse/plugin-grid-bookmark ^2.3.4
@jbrowse/plugin-gtf ^2.3.4
@jbrowse/plugin-hic ^2.3.4
@jbrowse/plugin-legacy-jbrowse ^2.3.4
@jbrowse/plugin-linear-comparative-view ^2.3.4
@jbrowse/plugin-linear-genome-view ^2.3.4
@jbrowse/plugin-lollipop ^2.3.4
@jbrowse/plugin-menus ^2.3.4
@jbrowse/plugin-rdf ^2.3.4
@jbrowse/plugin-sequence ^2.3.4
@jbrowse/plugin-spreadsheet-view ^2.3.4
@jbrowse/plugin-sv-inspector ^2.3.4
@jbrowse/plugin-svg ^2.3.4
@jbrowse/plugin-trix ^2.3.4
@jbrowse/plugin-variants ^2.3.4
@jbrowse/plugin-wiggle ^2.3.4
@mui/icons-material ^5.0.0
@mui/material ^5.10.17
@mui/x-data-grid ^5.0.1
base64-js ^1.3.0
clone ^2.1.2
copy-to-clipboard ^3.3.1
crypto-js ^3.0.0
file-saver ^2.0.0
librpc-web-mod ^1.1.5
mobx ^6.6.0
mobx-react ^7.5.0
mobx-state-tree ^5.0.0
node-polyfill-webpack-plugin ^2.0.1
pako ^1.0.10
prop-types ^15.7.2
react ^17.0.0
react-dom ^17.0.0
react-error-boundary ^3.0.0
requestidlecallback-polyfill ^1.0.2
rxjs ^7.0.0
serialize-error ^8.0.0
shortid ^2.2.15
tss-react ^4.4.1
use-query-params ^2.0.0
webpack ^5.72.0

website/package.json npm

@docusaurus/module-type-aliases 2.3.0 development
@tsconfig/docusaurus ^1.0.5 development
typescript ^4.9.5 development
@cmfcmf/docusaurus-search-local ^0.11.0
@docusaurus/core 2.3.0
@docusaurus/preset-classic 2.3.0
@emotion/react ^11.10.5
@emotion/styled ^11.10.5
@mdx-js/react ^1.0.0
@mui/icons-material ^5.11.0
@mui/material ^5.11.7
acorn ^8.8.2
acorn-jsx ^5.3.2
clsx ^1.2.1
copy-to-clipboard ^3.3.3
prism-react-renderer ^1.3.5
react ^17.0.2
react-dom ^17.0.2
react-player ^2.11.0

website/yarn.lock npm

1062 dependencies

yarn.lock npm

2431 dependencies

plugins/legacy-jbrowse/test_data/names/meta.json cpan

test_data/volvox/names/meta.json cpan

test_data/yeast_synteny/names/meta.json cpan

component_tests/react-app/package.json npm

@craco/craco ^7.0.0
@fontsource/roboto ^4.5.5
@jbrowse/react-app file:./packed/jbrowse-react-app.tgz
@testing-library/cypress ^9.0.0
@testing-library/jest-dom ^5.16.4
@testing-library/react ^12.1.4
@testing-library/user-event ^13.5.0
@types/jest ^27.4.1
@types/node ^16.11.26
@types/react ^18.0.0
@types/react-dom ^18.0.0
cypress ^12.9.0
node-polyfill-webpack-plugin ^2.0.1
react ^17.0.0
react-dom ^17.0.0
react-scripts ^5.0.1
serve ^14.2.0
start-server-and-test ^2.0.0
typescript ^5.0.4
web-vitals ^3.3.1

packages/app-core/package.json npm

@babel/runtime ^7.16.3
@jbrowse/product-core ^2.6.3
@mui/icons-material ^5.0.0
@mui/material ^5.10.17
clsx ^2.0.0
copy-to-clipboard ^3.3.1
react-error-boundary ^4.0.3

packages/embedded-core/package.json npm

@babel/runtime ^7.16.3
@jbrowse/product-core ^2.6.3
@mui/icons-material ^5.0.0
@mui/material ^5.10.17
copy-to-clipboard ^3.3.1
react-error-boundary ^4.0.3

packages/product-core/package.json npm

@babel/runtime ^7.16.3
@jbrowse/core ^2.6.3
@mui/icons-material ^5.0.0
@mui/material ^5.10.17
copy-to-clipboard ^3.3.1
librpc-web-mod ^1.0.0
react-error-boundary ^4.0.3
serialize-error ^8.0.0

packages/web-core/package.json npm

@babel/runtime ^7.16.3
@jbrowse/app-core ^2.6.3
@jbrowse/product-core ^2.6.3
@mui/icons-material ^5.0.0
@mui/material ^5.10.17
clone ^2.0.0
copy-to-clipboard ^3.3.1
react-error-boundary ^4.0.3

plugins/gccontent/package.json npm

plugins/lollipop/package.json npm

plugins/svg/package.json npm

products/jbrowse-predefined-sessions/package.json npm

products/jbrowse-react-app/package.json npm

@babel/runtime ^7.17.9
@emotion/cache ^11.7.1
@emotion/react ^11.9.0
@emotion/styled ^11.8.1
@jbrowse/app-core ^2.6.3
@jbrowse/core ^2.6.3
@jbrowse/plugin-alignments ^2.6.3
@jbrowse/plugin-arc ^2.6.3
@jbrowse/plugin-authentication ^2.6.3
@jbrowse/plugin-bed ^2.6.3
@jbrowse/plugin-breakpoint-split-view ^2.6.3
@jbrowse/plugin-circular-view ^2.6.3
@jbrowse/plugin-comparative-adapters ^2.6.3
@jbrowse/plugin-config ^2.6.3
@jbrowse/plugin-data-management ^2.6.3
@jbrowse/plugin-dotplot-view ^2.6.3
@jbrowse/plugin-gccontent ^2.6.3
@jbrowse/plugin-gff3 ^2.6.3
@jbrowse/plugin-grid-bookmark ^2.6.3
@jbrowse/plugin-gtf ^2.6.3
@jbrowse/plugin-hic ^2.6.3
@jbrowse/plugin-legacy-jbrowse ^2.6.3
@jbrowse/plugin-linear-comparative-view ^2.6.3
@jbrowse/plugin-linear-genome-view ^2.6.3
@jbrowse/plugin-lollipop ^2.6.3
@jbrowse/plugin-menus ^2.6.3
@jbrowse/plugin-rdf ^2.6.3
@jbrowse/plugin-sequence ^2.6.3
@jbrowse/plugin-spreadsheet-view ^2.6.3
@jbrowse/plugin-sv-inspector ^2.6.3
@jbrowse/plugin-svg ^2.6.3
@jbrowse/plugin-trix ^2.6.3
@jbrowse/plugin-variants ^2.6.3
@jbrowse/plugin-wiggle ^2.6.3
@jbrowse/product-core ^2.6.3
@jbrowse/web-core ^2.6.3
@mui/icons-material ^5.0.0
@mui/material ^5.10.17
@mui/x-data-grid ^6.0.1
base64-js ^1.0.0
clone ^2.1.2
copy-to-clipboard ^3.3.1
crypto-js ^3.0.0
file-saver ^2.0.0
mobx ^6.6.0
mobx-react ^9.0.0
mobx-state-tree ^5.0.0
node-polyfill-webpack-plugin ^2.0.1
pako ^2.1.0
prop-types ^15.0.0
react-error-boundary ^4.0.0
rxjs ^7.0.0
tss-react ^4.4.1
use-query-params ^2.0.0
webpack ^5.72.0

Score: 20.223582714304246