animl-py - v3.3.0

What's Changed

• add file_col to generator call by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/240
• add convnext framework by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/242
• 243 nan detections by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/244
• Fix for #247 collate function not handling broken images correctly by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/248
• change or to and and add else for empty not none check by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/251
• hide internal utils from api by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/252
• add station and camera in bfm, add unittests by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/254
• add unit tests, check inputs for classification by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/257
• add detection fnf handling and unittests by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/258
• Add unit tests for pipeline.py + fix broken export.py import by @Copilot in https://github.com/conservationtechlab/animl-py/pull/259
• 264 single classifcation best row by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/267
• Bfm updates by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/268
• Update file_management tests for new timezone/depth behavior and timestamp_col sequencing by @Copilot in https://github.com/conservationtechlab/animl-py/pull/262
• 265 detection category by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/270
• Add unit tests for visualization.py by @Copilot in https://github.com/conservationtechlab/animl-py/pull/271
• Update tests to match current dev branch API by @Copilot in https://github.com/conservationtechlab/animl-py/pull/272
• Add unit tests for animl/export.py by @Copilot in https://github.com/conservationtechlab/animl-py/pull/273
• 231 animlr check by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/274
• Add comprehensive unit tests for animl/reid/ by @Copilot in https://github.com/conservationtechlab/animl-py/pull/275
• Update test_detection.py to match refactored detection.py API by @Copilot in https://github.com/conservationtechlab/animl-py/pull/277
• Fix test_classification.py to reflect current classification.py by @Copilot in https://github.com/conservationtechlab/animl-py/pull/279
• Fix test_pipeline.py to match current pipeline.py implementation by @Copilot in https://github.com/conservationtechlab/animl-py/pull/281
• Add tests for category_map argument in detect() / _convert_detections() by @Copilot in https://github.com/conservationtechlab/animl-py/pull/282
• add count to sngle_classification by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/285
• Nikita fix config by @nikitasharma768 in https://github.com/conservationtechlab/animl-py/pull/289
• fix: resolve bugs when running train_classifier by @Raindrop182 in https://github.com/conservationtechlab/animl-py/pull/292
• Detect include categories by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/278
• Dev by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/269

New Contributors

• @nikitasharma768 made their first contribution in https://github.com/conservationtechlab/animl-py/pull/289
• @Raindrop182 made their first contribution in https://github.com/conservationtechlab/animl-py/pull/292

Full Changelog: https://github.com/conservationtechlab/animl-py/compare/v3.2.0...v3.3.0

Biosphere - Terrestrial Wildlife - Python
Published by tkswanson about 1 month ago

animl-py - v3.2.0

What's Changed

• v3.1.0 by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/194
• check for checkpoint path first by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/196
• 197 sort visualize by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/199
• 162 export coco by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/202
• add -d detect_only option to command line by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/203
• fix cache path bug by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/204
• update fro cometml 3.54, add optional dependency in toml by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/206
• typecast datetime to ensure correct transmission to animl-r by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/208
• check device first before setting pin_memory to true by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/210
• switch function to fillna by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/211
• fix bug with Path version of model_path by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/213
• fix export_timelapse for 3.1 by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/214
• add get_device_onnx by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/217
• fix inputs for onnx and series by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/219
• 182 train test split by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/220
• Dev by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/215
• 222 miew onnx by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/223
• add user_set for get_onnx_device, change get_device to get_torch_device by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/225
• convert none empty to empty df by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/227
• 232 onnx providers by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/233
• fix single_clasification to handle predictions_raw indexing correctly by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/234
• animl 3.2.0 by @tkswanson in https://github.com/conservationtechlab/animl-py/pull/224

Full Changelog: https://github.com/conservationtechlab/animl-py/compare/v3.1.0...v3.2.0

Biosphere - Terrestrial Wildlife - Python
Published by tkswanson 5 months ago

animl-py - 3.1.0 - Video and Onnx

update to python >=3.12
add .onnx support for MD and classifiers (onnxruntime >=1.23)
load_classifier also loads class_list, either from file or from model metadata
frames are now extracted on the fly, ImageGenerator -> ManifestGenerator
WorkingDir updated to remove Frames subfolder, Data subfolder
single_classification updated to handle video
update plot_box to optionally return image or save
add onnx tests

Biosphere - Terrestrial Wildlife - Python
Published by tkswanson 8 months ago

animl-py - v3.0.0

Animl 3.0.0 is a complete overhaul of the API including:

• reorganization of detection and classification modules
• reordering and addition of arguments
• overhaul of model training functions and hyperparameter options
• addition of reid module
• fix visualization functions
• rename of link/sort to export
• generator for megadetector
• added support for MDv6 and MDv1000
• add tools to download models

Biosphere - Terrestrial Wildlife - Python
Published by tkswanson 10 months ago

animl-py - v2.0.0

Modifications:

• improve sequence classification
• add custom yolo detection
• skip corrupted videos in extract_frames()
• add file_col to split() to prevent data leakage
• simplify matchypatchy api
• add optimizer and schedular kwargs to save_model
• add device as model class attribute
• add parameter and hyperparameter configuration options for training
• add cache_dir kwarg for TrainGenerator and train_dataloarder
• add typing
• flake8

Deletions:

• remove exiftools as a dependency
• remove detect_mp
• remove utils/dataloaders.py
• remove all but letterbox() and exif_transpose() from utils/augmentations

New Contributors

• @mamani828 made their first contribution in https://github.com/conservationtechlab/animl-py/pull/85

Full Changelog: https://github.com/conservationtechlab/animl-py/compare/v1.4.2...v2.0.0

Biosphere - Terrestrial Wildlife - Python
Published by tkswanson about 1 year ago

animl-py - Animl 1.4.2

Biosphere - Terrestrial Wildlife - Python
Published by tkswanson over 1 year ago

animl-py - Animl-py v1.3.0

Release Jul 25, 2024
Major Changes:

• PyTorch backend (remove TF)
• Train Classifiers
• Efficiency and speed improvements
• Compatibility with R package

Biosphere - Terrestrial Wildlife - Python
Published by tkswanson almost 2 years ago

animl-py - animl-py v1.1.0

Biosphere - Terrestrial Wildlife - Python
Published by tkswanson about 2 years ago